AT3G01690

Alpha beta hydrolase domain-containing protein 17C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006460
Physical Location & Seq
Forward (+)
256295 .. 258696
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01690.1

Sequence Viewer

Length: 1086 bp
ATGGGAGGGGTGACGTCATCGGTGGCGGCGAAGTTTGCCTTCTTCCCGCCGAGTCCACCGTCTTACAAGGTGGTGACCGACGAGCTCACCGGACTGTTGCTTCTCAGCCCTTTCCCCCACCGCGAAAACGTAGAAATCGTAAAGCTTCGGACCAGGAGAGGCACAGAGATCGTGGGCATGTACGTGAGGCATCCGATGGCTACCTCCACGCTCCTCTACTCCCATGGCAACGCCGCCGATCTGGGACAGATGTATGAGCTCTTCATTGAGCTTAGCATCCATCTCAAGGTTAATCTTATGGGATACGATTACTCCGGGTATGGACAATCTACTGGAAAGCCGAGTGAGCATAACACGTATGCTGATATCGAAGCTGTTTATAAGTGTCTTGAAGAAACCTTTGGCTCTAAGCAGGAAGGTGTCATCCTCTACGGCCAATCTGTAGGCAGCGGACCTACGTTAGATCTTGCTTCCCGGTTGCCTCAACTTAGAGCCGTCGTCCTTCACAGCCCCATTCTCTCCGGTTTAAGAGTTATGTATTCCGTCAAGAAAACCTACTGGTTCGACATCTACAAGAATATCGACAAAATCCCATATGTCGATTGCCCGGTTCTCATCATTCATGGAACTTCGGATGAGGTAGTGGATTGTTCTCATGGGAAACAACTATGGGAACTCTGCAAAGACAAGTACGAGCCGCTCTGGGTGAAAGGAGGGAACCACTGTGATCTTGAACACTACCCTGAATACATTAGACACCTCAAGAAGTTCATAGCAACAGTAGAGAGATTACCATGTCCGAGGATGAGCAGCGACCAATCAGAGAGAGTGAGAGATGCGCCCCCGAGGAGAAGTATGGACAGGAGAGTGAAGCCGAGGCAGAGCACAGAGCGTAGAGAGAAAGAGAAGCCACCAAAGAGTCAGTCGAAGATGAGTAGCAGCAGCAGCAAGCTCAAGATCTCGTTTGATCAACTTGATCGCTCGCGGAGGAGCGTTGACTGCCATGAAAAGACTCGGAAGAGCGTTGACCAGATTGAGAGGGGGAGGAAGAGTGTGGATAGGTTGGATAGAGTTCGCTCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

361

Amino Acids

41.2

Weight (kDa)

9.18

Isoelectric Point (pI)

62.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 70 - 174 6.9e-07 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 71 - 171 1.4e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AatII GACGTC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 700
AccII CGCG 2 cut(s) 123, 985
AciI CCGC 7 cut(s) 26, 47, 121, 234, 450, 698, 985
AcoI YGGCCR 1 cut(s) 433
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 2 cut(s) 182, 692
AfiI CCNNNNNNNGG 1 cut(s) 286
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 2 cut(s) 392, 734
AjnI CCWGG 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
AluBI AGCT 6 cut(s) 85, 145, 259, 271, 374, 952
AluI AGCT 6 cut(s) 85, 145, 259, 271, 374, 952
Alw21I GWGCWC 3 cut(s) 87, 261, 887
Ama87I CYCGRG 1 cut(s) 844
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 5 cut(s) 447, 810, 939, 942, 945
ArsI GACNNNNNNTTYG 2 cut(s) 908, 940
AspLEI GCGC 1 cut(s) 841
AspS9I GGNCC 2 cut(s) 150, 452
AsuC2I CCSGG 3 cut(s) 316, 475, 608
AsuHPI GGTGA 4 cut(s) 22, 79, 85, 718
AvaI CYCGRG 1 cut(s) 844
AvaII GGWCC 2 cut(s) 150, 452
BanII GRGCYC 2 cut(s) 87, 261
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
Bbv12I GWGCWC 3 cut(s) 87, 261, 887
BbvI GCAGC 5 cut(s) 459, 822, 951, 954, 957
BccI CCATC 2 cut(s) 190, 288
BceAI ACGGC 2 cut(s) 448, 479
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 154
BciVI GTATCC 1 cut(s) 296
BclI TGATCA 1 cut(s) 967
BcnI CCSGG 3 cut(s) 316, 475, 608
BfmI CTRYAG 1 cut(s) 441
BfuI GTATCC 1 cut(s) 296
BglII AGATCT 2 cut(s) 463, 957
BisI GCNGC 8 cut(s) 27, 234, 448, 698, 811, 940, 943, 946
BlpI GCTNAGC 1 cut(s) 272
BlsI GCNGC 8 cut(s) 28, 235, 449, 699, 812, 941, 944, 947
Bme1390I CCNGG 4 cut(s) 154, 316, 475, 608
Bme18I GGWCC 2 cut(s) 150, 452
BmeT110I CYCGRG 1 cut(s) 844
BmgT120I GGNCC 2 cut(s) 150, 452
BmiI GGNNCC 1 cut(s) 719
BmrFI CCNGG 4 cut(s) 154, 316, 475, 608
BmsI GCATC 3 cut(s) 199, 285, 826
Bpu1102I GCTNAGC 1 cut(s) 272
BpuEI CTTGAG 3 cut(s) 269, 746, 938
BpuMI CCSGG 3 cut(s) 316, 475, 608
BsaAI YACGTR 2 cut(s) 184, 357
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 223, 800, 845, 875
BsaWI WCCGGW 2 cut(s) 89, 521
BsaXI ACNNNNNCTCC 4 cut(s) 296, 326, 1036, 1066
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 337, 563
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 4 cut(s) 223, 800, 845, 875
BseGI GGATG 5 cut(s) 190, 276, 423, 640, 810
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 2 cut(s) 337, 563
BseRI GAGGAG 3 cut(s) 203, 862, 1003
BseXI GCAGC 5 cut(s) 459, 822, 951, 954, 957
Bsh1236I CGCG 2 cut(s) 123, 985
BshFI GGCC 1 cut(s) 435
BsiHKAI GWGCWC 3 cut(s) 87, 261, 887
BsiHKCI CYCGRG 1 cut(s) 844
BsiSI CCGG 5 cut(s) 90, 315, 475, 522, 608
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 1 cut(s) 435
BsoBI CYCGRG 1 cut(s) 844
Bsp1286I GDGCHC 3 cut(s) 87, 261, 887
Bsp143I GATC 7 cut(s) 168, 238, 463, 727, 957, 967, 976
Bsp1720I GCTNAGC 1 cut(s) 272
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 7 cut(s) 26, 47, 121, 234, 450, 698, 985
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 2 cut(s) 123, 985
BspLI GGNNCC 1 cut(s) 719
BspQI GCTCTTC 2 cut(s) 266, 1013
BsrBI CCGCTC 1 cut(s) 700
BsrI ACTGG 2 cut(s) 337, 563
BssECI CCNNGG 4 cut(s) 223, 800, 845, 875
BssMI GATC 7 cut(s) 168, 238, 463, 727, 957, 967, 976
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 4 cut(s) 60, 96, 725, 781
Bst6I CTCTTC 3 cut(s) 266, 1013, 1043
BstACI GRCGYC 1 cut(s) 14
BstBAI YACGTR 2 cut(s) 184, 357
BstC8I GCNNGC 2 cut(s) 950, 983
BstDEI CTNAG 4 cut(s) 104, 272, 408, 488
BstDSI CCRYGG 1 cut(s) 223
BstEII GGTNACC 1 cut(s) 73
BstF5I GGATG 5 cut(s) 190, 276, 423, 640, 810
BstFNI CGCG 2 cut(s) 123, 985
BstHHI GCGC 1 cut(s) 841
BstKTI GATC 7 cut(s) 171, 241, 466, 730, 960, 970, 979
BstMBI GATC 7 cut(s) 168, 238, 463, 727, 957, 967, 976
BstMWI GCNNNNNNNGC 4 cut(s) 35, 346, 945, 999
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 181
BstPI GGTNACC 1 cut(s) 73
BstSCI CCNGG 4 cut(s) 152, 314, 473, 606
BstSFI CTRYAG 1 cut(s) 441
BstUI CGCG 2 cut(s) 123, 985
BstV1I GCAGC 5 cut(s) 459, 822, 951, 954, 957
BstX2I RGATCY 2 cut(s) 463, 957
BstYI RGATCY 2 cut(s) 463, 957
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 435
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 5 cut(s) 190, 276, 423, 640, 810
BtsIMutI CAGTG 1 cut(s) 721
Cac8I GCNNGC 2 cut(s) 950, 983
CfoI GCGC 1 cut(s) 841
Cfr13I GGNCC 2 cut(s) 150, 452
Csp6I GTAC 2 cut(s) 181, 691
CviAII CATG 6 cut(s) 178, 224, 623, 656, 795, 1004
CviQI GTAC 2 cut(s) 181, 691
DdeI CTNAG 4 cut(s) 104, 272, 408, 488
DpnI GATC 7 cut(s) 170, 240, 465, 729, 959, 969, 978
DpnII GATC 7 cut(s) 168, 238, 463, 727, 957, 967, 976
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 3 cut(s) 266, 1013, 1043
EarI CTCTTC 3 cut(s) 266, 1013, 1043
Ecl136II GAGCTC 2 cut(s) 85, 259
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 2 cut(s) 87, 261
Eco32I GATATC 1 cut(s) 367
Eco47I GGWCC 2 cut(s) 150, 452
Eco53kI GAGCTC 2 cut(s) 85, 259
Eco88I CYCGRG 1 cut(s) 844
Eco91I GGTNACC 1 cut(s) 73
EcoICRI GAGCTC 2 cut(s) 85, 259
EcoO65I GGTNACC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 152
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 2 cut(s) 87, 261
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 6 cut(s) 181, 227, 626, 659, 798, 1007
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 1 cut(s) 258
FatI CATG 6 cut(s) 177, 223, 622, 655, 794, 1003
FauI CCCGC 1 cut(s) 54
FauNDI CATATG 1 cut(s) 595
FbaI TGATCA 1 cut(s) 967
Fnu4HI GCNGC 8 cut(s) 27, 234, 448, 698, 811, 940, 943, 946
FokI GGATG 5 cut(s) 177, 263, 410, 647, 817
FriOI GRGCYC 2 cut(s) 87, 261
Fsp4HI GCNGC 8 cut(s) 27, 234, 448, 698, 811, 940, 943, 946
GlaI GCGC 1 cut(s) 840
GluI GCNGC 8 cut(s) 27, 234, 448, 698, 811, 940, 943, 946
HaeIII GGCC 1 cut(s) 435
HapII CCGG 5 cut(s) 90, 315, 475, 522, 608
HhaI GCGC 1 cut(s) 841
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 6 cut(s) 181, 227, 626, 659, 798, 1007
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HincII GTYRAC 2 cut(s) 997, 1027
HindII GTYRAC 2 cut(s) 997, 1027
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 3 cut(s) 52, 919, 1012
HpaII CCGG 5 cut(s) 90, 315, 475, 522, 608
HphI GGTGA 4 cut(s) 22, 79, 85, 718
Hpy166II GTNNAC 3 cut(s) 56, 997, 1027
Hpy188I TCNGA 7 cut(s) 150, 195, 634, 801, 823, 1017, 1081
Hpy188III TCNNGA 5 cut(s) 389, 547, 731, 763, 955
Hpy8I GTNNAC 3 cut(s) 56, 997, 1027
Hpy99I CGWCG 2 cut(s) 83, 500
HpyAV CCTTC 3 cut(s) 49, 410, 512
HpyCH4III ACNGT 4 cut(s) 60, 96, 725, 781
HpyCH4IV ACGT 5 cut(s) 14, 129, 183, 356, 458
HpyCH4V TGCA 1 cut(s) 681
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 346, 945, 999
HpyF3I CTNAG 4 cut(s) 104, 272, 408, 488
HpySE526I ACGT 5 cut(s) 14, 129, 183, 356, 458
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 6 cut(s) 181, 227, 626, 659, 798, 1007
HspAI GCGC 1 cut(s) 839
Ksp22I TGATCA 1 cut(s) 967
Kzo9I GATC 7 cut(s) 168, 238, 463, 727, 957, 967, 976
LguI GCTCTTC 2 cut(s) 266, 1013
LmnI GCTCC 3 cut(s) 216, 990, 1082
Lsp1109I GCAGC 5 cut(s) 459, 822, 951, 954, 957
LweI GCATC 3 cut(s) 199, 285, 826
MaeII ACGT 5 cut(s) 14, 129, 183, 356, 458
MaeIII GTNAC 2 cut(s) 10, 73
MalI GATC 7 cut(s) 170, 240, 465, 729, 959, 969, 978
MbiI CCGCTC 1 cut(s) 700
MboI GATC 7 cut(s) 168, 238, 463, 727, 957, 967, 976
MboII GAAGA 6 cut(s) 34, 253, 404, 940, 1030, 1060
MflI RGATCY 2 cut(s) 463, 957
MhlI GDGCHC 3 cut(s) 87, 261, 887
MlyI GAGTC 3 cut(s) 61, 928, 1006
MmeI TCCRAC 1 cut(s) 1044
MseI TTAA 2 cut(s) 291, 527
MslI CAYNNNNRTG 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 5 cut(s) 90, 315, 475, 522, 608
MspR9I CCNGG 4 cut(s) 154, 316, 475, 608
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 2 cut(s) 123, 985
MwoI GCNNNNNNNGC 4 cut(s) 35, 346, 945, 999
NciI CCSGG 3 cut(s) 316, 475, 608
NcoI CCATGG 1 cut(s) 223
NdeI CATATG 1 cut(s) 595
NdeII GATC 7 cut(s) 168, 238, 463, 727, 957, 967, 976
NlaIII CATG 6 cut(s) 181, 227, 626, 659, 798, 1007
NlaIV GGNNCC 1 cut(s) 719
NmeAIII GCCGAG 3 cut(s) 75, 366, 900
NmuCI GTSAC 2 cut(s) 10, 73
NspI RCATGY 1 cut(s) 181
PciSI GCTCTTC 2 cut(s) 266, 1013
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 135
PkrI GCNGC 8 cut(s) 28, 235, 449, 699, 812, 941, 944, 947
PleI GAGTC 3 cut(s) 60, 927, 1006
PpsI GAGTC 3 cut(s) 60, 927, 1006
Ppu21I YACGTR 2 cut(s) 184, 357
PsiI TTATAA 1 cut(s) 381
Psp124BI GAGCTC 2 cut(s) 87, 261
Psp6I CCWGG 1 cut(s) 152
PspEI GGTNACC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 719
PspPI GGNCC 2 cut(s) 150, 452
PsuI RGATCY 2 cut(s) 463, 957
RsaI GTAC 2 cut(s) 182, 692
RsaNI GTAC 2 cut(s) 181, 691
RseI CAYNNNNRTG 1 cut(s) 182
SacI GAGCTC 2 cut(s) 87, 261
SapI GCTCTTC 2 cut(s) 266, 1013
SaqAI TTAA 2 cut(s) 291, 527
SatI GCNGC 8 cut(s) 27, 234, 448, 698, 811, 940, 943, 946
Sau3AI GATC 7 cut(s) 168, 238, 463, 727, 957, 967, 976
Sau96I GGNCC 2 cut(s) 150, 452
SchI GAGTC 3 cut(s) 61, 928, 1006
ScrFI CCNGG 4 cut(s) 154, 316, 475, 608
SduI GDGCHC 3 cut(s) 87, 261, 887
SfaNI GCATC 3 cut(s) 199, 285, 826
SfcI CTRYAG 1 cut(s) 441
SinI GGWCC 2 cut(s) 150, 452
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 3 cut(s) 284, 761, 953
SmoI CTYRAG 3 cut(s) 284, 761, 953
SsiI CCGC 7 cut(s) 26, 47, 121, 234, 450, 698, 985
SstI GAGCTC 2 cut(s) 87, 261
StyD4I CCNGG 4 cut(s) 152, 314, 473, 606
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 4 cut(s) 60, 96, 725, 781
TaiI ACGT 5 cut(s) 17, 132, 186, 359, 461
TaqI TCGA 5 cut(s) 369, 564, 582, 600, 926
TaqII GACCGA 1 cut(s) 92
TauI GCSGC 3 cut(s) 29, 236, 700
Tru1I TTAA 2 cut(s) 291, 527
Tru9I TTAA 2 cut(s) 291, 527
TscAI CASTG 1 cut(s) 728
TseFI GTSAC 2 cut(s) 10, 73
TseI GCWGC 5 cut(s) 447, 810, 939, 942, 945
Tsp45I GTSAC 2 cut(s) 10, 73
TspDTI ATGAA 4 cut(s) 253, 611, 760, 1020
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 1 cut(s) 728
VpaK11BI GGWCC 2 cut(s) 150, 452
XceI RCATGY 1 cut(s) 181
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.