Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Reverse (-)

1225160 .. 1228028

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1020200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGTGGGGTGACGTCGTCCATGGCGGCCAAGTTTGCCTTTTTCCCACCGAACCCACCTTCCTACAAGCTCATCACAGACGACCACACCGGCCTTCTGCTTCTCAGCCCCTTCCCTCACCGGGAAAACGTGGAGGTTCTGAAACTGCCGACCCGCCGTGGCACTGAGGTTGTGGCCATCTACATTCGCCACCCCTTGGCCACTTCTACTCTGCTCTACTCCCACGGCAACGCCGCCGATCTGGGCCAGATGTACGAGCTCTTCATCGAATTAAGCATCCACCTGCGCGTCAATCTCATGGGGTACGACTATTCGGGGTATGGGCAATCAACTGGAAAGGCAAGTGAGCAGAATACATATGCAGATATTGAAGCTGCATATAAGTGTCTTGAAGAATGCTATGGTACTAAGCAGGAAGATATCATTCTCTATGGCCAATCTGTTGGAAGTGGCCCCACGTTGGATCTTGCTGCTCGGCTGCCTCAGTTAAGAGCTGTTGTCTTGCATAGTCCCATACTATCTGGTTTAAGGGTCATGTATCCTGTAAAGCGTTCATACTGGTTTGACATTTATAAGAATATCGATAAAATTCCACTGGTCCATTGTCCCGTTCTCATCATTCATGGGACTGCGGATGAAGTAGTCGATTGTTCTCATGGCAAGCAACTCTGGGAACTGTGTAAAGAGAAATATGAACCACTGTGGCTTAAAGGAGGAAACCACTGTGATTTAGAGCTCTATCCTGAGTATATCAGACATCTCAAGAAGTTCATATCAACCGTTGAGAAGTCTCCTTCCCAGAGATACGGTTCTAGGAGAAGCACAGACCAGTTTGAGCAGCCTCGGAAGAGTACTGATGTTTATGAAGTTTCAAGGAAGAGCACAGATCGAAGGGAGAAACCGAGAAAGAGCACTGATAGGCCTGAAAAACTGAAAAATCAGTTCATCAGTGCTGATAAACTAGAAAAACTAAGAGTATCTTTTGACCACATGGAAAGGTCGCGGAGAAGCGTGGACTGCCATGAGAAGTCTAGAAAAAGTATCGACCACCAAATGGACAGAGCACGGAAGAGTGTGGATCGATTGGATAGAATACGAACTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

369

Amino Acids

42.27

Weight (kDa)

9.02

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	71 - 175	9.3e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	71 - 171	5.1e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AarI	CACCTGC	1 cut(s)	291
AatII	GACGTC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	291
AccB7I	CCANNNNNTGG	2 cut(s)	196, 1054
AccII	CGCG	2 cut(s)	288, 1003
AciI	CCGC	5 cut(s)	26, 154, 234, 632, 1003
AclWI	GGATC	2 cut(s)	471, 1086
AcoI	YGGCCR	4 cut(s)	27, 174, 198, 433
AcsI	RAATTY	1 cut(s)	588
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	4 cut(s)	254, 305, 406, 853
AfiI	CCNNNNNNNGG	4 cut(s)	121, 196, 460, 1054
AgsI	TTSAA	3 cut(s)	371, 392, 873
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	5 cut(s)	70, 259, 374, 494, 736
AluI	AGCT	5 cut(s)	70, 259, 374, 494, 736
Alw21I	GWGCWC	5 cut(s)	261, 738, 884, 914, 1066
Alw26I	GTCTC	1 cut(s)	795
AlwI	GGATC	2 cut(s)	471, 1086
AoxI	GGCC	8 cut(s)	27, 91, 174, 198, 244, 433, 451, 920
ApeKI	GCWGC	4 cut(s)	374, 470, 478, 838
ApoI	RAATTY	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	3 cut(s)	244, 452, 598
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	22, 110
AvaII	GGWCC	1 cut(s)	598
BalI	TGGCCA	3 cut(s)	176, 200, 435
BanII	GRGCYC	2 cut(s)	261, 738
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
Bbv12I	GWGCWC	5 cut(s)	261, 738, 884, 914, 1066
BbvI	GCAGC	4 cut(s)	361, 457, 465, 850
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	141, 241
BciVI	GTATCC	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	795
BfaI	CTAG	3 cut(s)	813, 962, 1032
BfuAI	ACCTGC	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	549
BisI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 839
BlsI	GCNGC	6 cut(s)	28, 235, 376, 472, 480, 840
BmcAI	AGTACT	1 cut(s)	853
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	3 cut(s)	244, 452, 598
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	746
BpuMI	CCSGG	1 cut(s)	122
Bsa29I	ATCGAT	2 cut(s)	582, 1081
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	5 cut(s)	21, 157, 195, 223, 842
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 196, 460, 1054
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	5 cut(s)	337, 563, 600, 829, 1105
BseCI	ATCGAT	2 cut(s)	582, 1081
BseDI	CCNNGG	5 cut(s)	21, 157, 195, 223, 842
BseGI	GGATG	2 cut(s)	276, 640
BseLI	CCNNNNNNNGG	4 cut(s)	121, 196, 460, 1054
BseMII	CTCAG	4 cut(s)	118, 156, 497, 735
BseNI	ACTGG	5 cut(s)	337, 563, 600, 829, 1105
BseXI	GCAGC	4 cut(s)	361, 457, 465, 850
Bsh1236I	CGCG	2 cut(s)	288, 1003
BshFI	GGCC	8 cut(s)	29, 93, 176, 200, 246, 435, 453, 922
BshVI	ATCGAT	2 cut(s)	582, 1081
BsiHKAI	GWGCWC	5 cut(s)	261, 738, 884, 914, 1066
BsiSI	CCGG	2 cut(s)	90, 121
BslFI	GGGAC	3 cut(s)	495, 591, 640
BslI	CCNNNNNNNGG	4 cut(s)	121, 196, 460, 1054
BsmAI	GTCTC	1 cut(s)	795
BsmFI	GGGAC	3 cut(s)	495, 591, 640
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	8 cut(s)	29, 93, 176, 200, 246, 435, 453, 922
Bsp1286I	GDGCHC	5 cut(s)	261, 738, 884, 914, 1066
Bsp143I	GATC	4 cut(s)	238, 463, 886, 1078
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	5 cut(s)	26, 154, 234, 632, 1003
BspANI	GGCC	8 cut(s)	29, 93, 176, 200, 246, 435, 453, 922
BspCNI	CTCAG	4 cut(s)	117, 157, 496, 736
BspDI	ATCGAT	2 cut(s)	582, 1081
BspFNI	CGCG	2 cut(s)	288, 1003
BspLI	GGNNCC	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	471, 1086
BspQI	GCTCTTC	2 cut(s)	266, 872
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	5 cut(s)	337, 563, 600, 829, 1105
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	5 cut(s)	21, 157, 195, 223, 842
BssMI	GATC	4 cut(s)	238, 463, 886, 1078
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	2 cut(s)	21, 195
Bst4CI	ACNGT	5 cut(s)	678, 702, 725, 781, 809
Bst6I	CTCTTC	4 cut(s)	266, 842, 872, 1064
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	662
BstDEI	CTNAG	6 cut(s)	104, 165, 408, 483, 744, 971
BstDSI	CCRYGG	3 cut(s)	21, 157, 223
BstF5I	GGATG	2 cut(s)	276, 640
BstFNI	CGCG	2 cut(s)	288, 1003
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	4 cut(s)	241, 466, 889, 1081
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	4 cut(s)	238, 463, 886, 1078
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 1017
BstSCI	CCNGG	1 cut(s)	120
BstUI	CGCG	2 cut(s)	288, 1003
BstV1I	GCAGC	4 cut(s)	361, 457, 465, 850
BstX2I	RGATCY	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	463
Bsu15I	ATCGAT	2 cut(s)	582, 1081
BsuI	GTATCC	1 cut(s)	549
BsuRI	GGCC	8 cut(s)	29, 93, 176, 200, 246, 435, 453, 922
BsuTUI	ATCGAT	2 cut(s)	582, 1081
BtgI	CCRYGG	3 cut(s)	21, 157, 223
BtsCI	GGATG	2 cut(s)	276, 640
BtsIMutI	CAGTG	6 cut(s)	162, 593, 698, 721, 912, 955
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	662
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	3 cut(s)	244, 452, 598
ClaI	ATCGAT	2 cut(s)	582, 1081
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	4 cut(s)	253, 304, 405, 852
CviAII	CATG	7 cut(s)	22, 298, 535, 623, 656, 991, 1022
CviQI	GTAC	4 cut(s)	253, 304, 405, 852
DdeI	CTNAG	6 cut(s)	104, 165, 408, 483, 744, 971
DpnI	GATC	4 cut(s)	240, 465, 888, 1080
DpnII	GATC	4 cut(s)	238, 463, 886, 1078
EaeI	YGGCCR	4 cut(s)	27, 174, 198, 433
Eam1104I	CTCTTC	4 cut(s)	266, 842, 872, 1064
EarI	CTCTTC	4 cut(s)	266, 842, 872, 1064
Ecl136II	GAGCTC	2 cut(s)	259, 736
Eco130I	CCWWGG	2 cut(s)	21, 195
Eco147I	AGGCCT	1 cut(s)	922
Eco24I	GRGCYC	2 cut(s)	261, 738
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	598
Eco53kI	GAGCTC	2 cut(s)	259, 736
EcoICRI	GAGCTC	2 cut(s)	259, 736
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	21, 195
EcoT38I	GRGCYC	2 cut(s)	261, 738
ErhI	CCWWGG	2 cut(s)	21, 195
FaeI	CATG	7 cut(s)	25, 301, 538, 626, 659, 994, 1025
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 964, 996
FaqI	GGGAC	3 cut(s)	495, 591, 640
FatI	CATG	7 cut(s)	21, 297, 534, 622, 655, 990, 1021
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 839
FokI	GGATG	2 cut(s)	263, 647
FriOI	GRGCYC	2 cut(s)	261, 738
Fsp4HI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 839
FspBI	CTAG	3 cut(s)	813, 962, 1032
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 839
HaeIII	GGCC	8 cut(s)	29, 93, 176, 200, 246, 435, 453, 922
HapII	CCGG	2 cut(s)	90, 121
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	7 cut(s)	25, 301, 538, 626, 659, 994, 1025
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HpaII	CCGG	2 cut(s)	90, 121
HphI	GGTGA	2 cut(s)	22, 110
Hpy166II	GTNNAC	1 cut(s)	1015
Hpy188I	TCNGA	3 cut(s)	141, 755, 846
Hpy188III	TCNNGA	4 cut(s)	389, 743, 763, 1032
Hpy8I	GTNNAC	1 cut(s)	1015
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	5 cut(s)	69, 104, 121, 804, 885
HpyCH4III	ACNGT	5 cut(s)	678, 702, 725, 781, 809
HpyCH4IV	ACGT	3 cut(s)	14, 129, 458
HpyCH4V	TGCA	3 cut(s)	362, 377, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 1017
HpyF3I	CTNAG	6 cut(s)	104, 165, 408, 483, 744, 971
HpySE526I	ACGT	3 cut(s)	14, 129, 458
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	7 cut(s)	25, 301, 538, 626, 659, 994, 1025
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	238, 463, 886, 1078
LguI	GCTCTTC	2 cut(s)	266, 872
Lsp1109I	GCAGC	4 cut(s)	361, 457, 465, 850
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	3 cut(s)	813, 962, 1032
MaeII	ACGT	3 cut(s)	14, 129, 458
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	4 cut(s)	240, 465, 888, 1080
MboI	GATC	4 cut(s)	238, 463, 886, 1078
MboII	GAAGA	6 cut(s)	253, 404, 428, 859, 889, 1081
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	5 cut(s)	261, 738, 884, 914, 1066
MlsI	TGGCCA	3 cut(s)	176, 200, 435
MluCI	AATT	2 cut(s)	269, 588
MluNI	TGGCCA	3 cut(s)	176, 200, 435
MmeI	TCCRAC	2 cut(s)	424, 441
MnlI	CCTC	6 cut(s)	126, 127, 160, 492, 707, 852
Mox20I	TGGCCA	3 cut(s)	176, 200, 435
MscI	TGGCCA	3 cut(s)	176, 200, 435
MseI	TTAA	4 cut(s)	272, 488, 527, 708
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	3 cut(s)	176, 200, 435
MspI	CCGG	2 cut(s)	90, 121
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	401
MvnI	CGCG	2 cut(s)	288, 1003
MwoI	GCNNNNNNNGC	2 cut(s)	35, 1017
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	4 cut(s)	238, 463, 886, 1078
NlaIII	CATG	7 cut(s)	25, 301, 538, 626, 659, 994, 1025
NlaIV	GGNNCC	1 cut(s)	454
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	291
PceI	AGGCCT	1 cut(s)	922
PciSI	GCTCTTC	2 cut(s)	266, 872
PctI	GAATGC	1 cut(s)	401
PflFI	GACNNNGTC	1 cut(s)	16
PflMI	CCANNNNNTGG	2 cut(s)	196, 1054
PkrI	GCNGC	6 cut(s)	28, 235, 376, 472, 480, 840
PsiI	TTATAA	1 cut(s)	573
Psp124BI	GAGCTC	2 cut(s)	261, 738
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	3 cut(s)	244, 452, 598
PsuI	RGATCY	1 cut(s)	463
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	4 cut(s)	254, 305, 406, 853
RsaNI	GTAC	4 cut(s)	253, 304, 405, 852
RseI	CAYNNNNRTG	1 cut(s)	382
SacI	GAGCTC	2 cut(s)	261, 738
SapI	GCTCTTC	2 cut(s)	266, 872
SaqAI	TTAA	4 cut(s)	272, 488, 527, 708
SatI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 839
Sau3AI	GATC	4 cut(s)	238, 463, 886, 1078
Sau96I	GGNCC	3 cut(s)	244, 452, 598
ScaI	AGTACT	1 cut(s)	853
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	5 cut(s)	261, 738, 884, 914, 1066
SfaNI	GCATC	1 cut(s)	285
SinI	GGWCC	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	2 cut(s)	269, 588
SseBI	AGGCCT	1 cut(s)	922
SsiI	CCGC	5 cut(s)	26, 154, 234, 632, 1003
SspMI	CTAG	3 cut(s)	813, 962, 1032
SstI	GAGCTC	2 cut(s)	261, 738
StuI	AGGCCT	1 cut(s)	922
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	21, 195
TaaI	ACNGT	5 cut(s)	678, 702, 725, 781, 809
TaiI	ACGT	3 cut(s)	17, 132, 461
TaqI	TCGA	6 cut(s)	267, 582, 645, 889, 1044, 1081
TasI	AATT	2 cut(s)	269, 588
TatI	WGTACW	1 cut(s)	851
TauI	GCSGC	2 cut(s)	29, 236
Tru1I	TTAA	4 cut(s)	272, 488, 527, 708
Tru9I	TTAA	4 cut(s)	272, 488, 527, 708
TscAI	CASTG	6 cut(s)	169, 600, 705, 728, 919, 955
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	4 cut(s)	374, 470, 478, 838
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	8 cut(s)	253, 543, 611, 651, 708, 760, 879, 934
TspGWI	ACGGA	1 cut(s)	1081
TspRI	CASTG	6 cut(s)	169, 600, 705, 728, 919, 955
Tth111I	GACNNNGTC	1 cut(s)	16
Van91I	CCANNNNNTGG	2 cut(s)	196, 1054
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	1 cut(s)	588
XbaI	TCTAGA	1 cut(s)	1031
XspI	CTAG	3 cut(s)	813, 962, 1032
ZraI	GACGTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.