Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Reverse (-)

11758487 .. 11758962

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1141500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTGGCCAAGTTCGCTTTTTTCACACCGAACCCACCTTCCTACAAGCTTATCATAGACGACCACACCGGCCTCCTGCTTCTCAGCCCCTTCCATCACTGGGAAAATATGGAAGTTCTGAAACTGCTGACCCGTCGTGGCATTGAGGTTGTGGCCATCCACATTCGCCACCCTTTGGCCATTTCTACACTGCTTTACTCCCACAGCAACGCCACCGATCTGGGCCATATGTACAAGCTCTTCATCGAATTGAGCATCCACCTGCGCGTCAATCTCATGGGGTACGACTATTCGGGGTATGGGCAATCAACTGGAAAGGCAAGTGAGCAGAATACATATGCAGATATTAAAGCTGCATATAAGTGTCTTGAAGAATGCCATAGTATCGAAGTTCTTCCACGTCCCCTAAGGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

139

Amino Acids

15.75

Weight (kDa)

7.13

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccII	CGCG	1 cut(s)	267
AcoI	YGGCCR	3 cut(s)	6, 153, 177
AfaI	GTAC	2 cut(s)	233, 284
AfiI	CCNNNNNNNGG	2 cut(s)	100, 175
AgsI	TTSAA	1 cut(s)	371
AjiI	CACGTC	1 cut(s)	401
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	3 cut(s)	49, 238, 353
AluI	AGCT	3 cut(s)	49, 238, 353
AoxI	GGCC	5 cut(s)	6, 70, 153, 177, 223
ApeKI	GCWGC	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	223
AxyI	CCTNAGG	1 cut(s)	407
BalI	TGGCCA	3 cut(s)	8, 155, 179
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	102, 164
BfuAI	ACCTGC	1 cut(s)	270
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	223
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 175
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	104, 316
Bse21I	CCTNAGG	1 cut(s)	407
BseGI	GGATG	2 cut(s)	156, 255
BseLI	CCNNNNNNNGG	2 cut(s)	100, 175
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	2 cut(s)	104, 316
BseXI	GCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	5 cut(s)	8, 72, 155, 179, 225
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	2 cut(s)	100, 175
BsmFI	GGGAC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	5 cut(s)	8, 72, 155, 179, 225
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	217
BspANI	GGCC	5 cut(s)	8, 72, 155, 179, 225
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	104, 316
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	245
BstAUI	TGTACA	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	83, 407
BstF5I	GGATG	2 cut(s)	156, 255
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	340
BstXI	CCANNNNNNTGG	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	5 cut(s)	8, 72, 155, 179, 225
BtrI	CACGTC	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	156, 255
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	2 cut(s)	97, 188
BveI	ACCTGC	1 cut(s)	270
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	232, 283
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	9 cut(s)	8, 49, 72, 87, 155, 179, 225, 238, 353
CviKI_1	RGCY	9 cut(s)	8, 49, 72, 87, 155, 179, 225, 238, 353
CviQI	GTAC	2 cut(s)	232, 283
DdeI	CTNAG	2 cut(s)	83, 407
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EaeI	YGGCCR	3 cut(s)	6, 153, 177
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco81I	CCTNAGG	1 cut(s)	407
FaeI	CATG	1 cut(s)	280
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	1 cut(s)	276
FauNDI	CATATG	2 cut(s)	228, 337
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	2 cut(s)	143, 242
Fsp4HI	GCNGC	1 cut(s)	354
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	5 cut(s)	8, 72, 155, 179, 225
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	47
HpaII	CCGG	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	368
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	48, 100
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	2 cut(s)	341, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	83, 407
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	217
LguI	GCTCTTC	1 cut(s)	245
LpnPI	CCDG	6 cut(s)	82, 85, 89, 206, 275, 297
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	264
MaeII	ACGT	1 cut(s)	400
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	232, 383, 386
MlsI	TGGCCA	3 cut(s)	8, 155, 179
MluCI	AATT	1 cut(s)	248
MluNI	TGGCCA	3 cut(s)	8, 155, 179
MnlI	CCTC	2 cut(s)	83, 139
Mox20I	TGGCCA	3 cut(s)	8, 155, 179
MroXI	GAANNNNTTC	1 cut(s)	393
MscI	TGGCCA	3 cut(s)	8, 155, 179
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	361
Msp20I	TGGCCA	3 cut(s)	8, 155, 179
MspI	CCGG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	380
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeI	CATATG	2 cut(s)	228, 337
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	245
PctI	GAATGC	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	393
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	223
RsaI	GTAC	2 cut(s)	233, 284
RsaNI	GTAC	2 cut(s)	232, 283
RseI	CAYNNNNRTG	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	223
SetI	ASST	7 cut(s)	40, 51, 150, 240, 264, 355, 403
SfaNI	GCATC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	361
Sse9I	AATT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	2 cut(s)	246, 387
TasI	AATT	1 cut(s)	248
TatI	WGTACW	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	104, 195
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	104, 195
Van91I	CCANNNNNTGG	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.