Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Forward (+)

69778058 .. 69779272

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0571600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAAGCAGAATACTCAACCTACACTGCTCGAGCGTCGGTCTCTGACCCTAAAAAGAAAAACAGAGGAGCTCGGTACCCATTGTGAAGGCAATGTCCAAATCTGTCCAAACAAATCCGACGCCGCCGGTAAGAAGAGATCACATATCTCACCAAAATCGAAGAAACAAAAAGTACTTTATAATGCTGGAGAAGGGGTCGATGATATAGAATCGTGGGCCGATGAATTGGAGAAGTTGATCCCGGAATGTACTGAGTTGTTGGGAGTTAAATCGGACGAATTTGAGGGATCATCACAGCCCATTGATACTGCTGGAAAAGAGGTCGATGATATAGAATCGTGGGCCGATGAATTGGAGAAGTTGATCCCGGAATGTACTGAGTTGTTGGGAGTTAAATCGGACGAATTTGAGGGATCACCACAGCCCATTGATACTGCTGGAAAAGGGGTTGATCATCACACGGAGGAAATTGAGAAGTTACCCCGGGAATCATTGATGGATATTATTGATTTCTTGGAGTCCAAGGAAAAAAAATTGGAAGAGAAGATCAACTCGATCGAGGGATCAAAATCTACTGATCAGCCTGACTGCATTAATAATTGTAATTCCCCTCTAGGGCTCACCAAAGAATTATGTAACGATCCGAGGTTTGCGGGTTTTTATGAGGGGAAAACAATCTTGCAAGCTTGTGAGTACCCTGGCTTTGATAGTGGTTTTGGGACTAGTACTAGTAGCTCTCTTGTTTACCAAAATACCCATTACCCTGGTTTGCCCAGTGGTATTGGGAGTAGTACTACTAGTAGCAGTACTAATATTGATAGTGGTAATGACCAATGGTGGGAGCTTAGTACTGGTATTGAGAACTATAGTACTATCTTCAGTAGTATTGGTGATGAATCTTGGATTGAGAATCATATTTCATTGGAGGGTTTTGAACATTGGTCAAGCAATGAGATGATGAGGATGACAAGGTTAGAGGAACATCAAAGTTGTGAATCTGCTGCAGGAACTTCTGGTTGTACTAGTACTCCATTTCCTTGTCAATCCGGGAAAGGTCATACAGATACGTTAGGTTTCGAGGCGGTGGATATTAGAGATATGGATCAGAAATTCACGGTGGCTCCTCAACCATCCCCTGAAGTATTGCTGACTAATTCATTGGGTCCAAAGCATGAGCAGTTTCACAAGAACCATGAGCTTATTATCATTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

404

Amino Acids

44.68

Weight (kDa)

4.65

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AciI	CCGC	3 cut(s)	123, 653, 1082
AclWI	GGATC	7 cut(s)	232, 295, 358, 421, 571, 635, 1110
AcsI	RAATTY	3 cut(s)	278, 404, 1109
AcuI	CTGAAG	2 cut(s)	862, 1158
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	615, 838
AgsI	TTSAA	1 cut(s)	935
AhlI	ACTAGT	4 cut(s)	722, 728, 797, 1022
AjnI	CCWGG	2 cut(s)	697, 763
AluBI	AGCT	5 cut(s)	70, 686, 735, 844, 1198
AluI	AGCT	5 cut(s)	70, 686, 735, 844, 1198
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	7 cut(s)	232, 295, 358, 421, 571, 635, 1110
Ama87I	CYCGRG	2 cut(s)	29, 483
AoxI	GGCC	2 cut(s)	216, 342
ApeKI	GCWGC	1 cut(s)	1001
ApoI	RAATTY	3 cut(s)	278, 404, 1109
AseI	ATTAAT	1 cut(s)	594
Asp718I	GGTACC	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	216, 342, 1163
AsuC2I	CCSGG	5 cut(s)	242, 368, 484, 485, 1048
AsuHPI	GGTGA	4 cut(s)	141, 408, 613, 902
AvaI	CYCGRG	2 cut(s)	29, 483
AvaII	GGWCC	1 cut(s)	1163
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	2 cut(s)	72, 621
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	988
BccI	CCATC	2 cut(s)	490, 1138
BciT130I	CCWGG	2 cut(s)	699, 765
BclI	TGATCA	2 cut(s)	451, 577
BcnI	CCSGG	5 cut(s)	242, 368, 484, 485, 1048
BcoDI	GTCTC	1 cut(s)	45
BcuI	ACTAGT	4 cut(s)	722, 728, 797, 1022
BfaI	CTAG	5 cut(s)	614, 723, 729, 798, 1023
BfmI	CTRYAG	2 cut(s)	865, 1002
BisI	GCNGC	2 cut(s)	123, 1002
BlsI	GCNGC	2 cut(s)	124, 1003
BmcAI	AGTACT	7 cut(s)	174, 727, 793, 808, 850, 871, 1027
Bme1390I	CCNGG	7 cut(s)	242, 368, 484, 485, 699, 765, 1048
Bme18I	GGWCC	1 cut(s)	1163
BmeT110I	CYCGRG	2 cut(s)	29, 483
BmgT120I	GGNCC	3 cut(s)	216, 342, 1163
BmiI	GGNNCC	3 cut(s)	76, 1122, 1164
BmrFI	CCNGG	7 cut(s)	242, 368, 484, 485, 699, 765, 1048
BmrI	ACTGGG	1 cut(s)	768
BmuI	ACTGGG	1 cut(s)	768
BpmI	CTGGAG	1 cut(s)	207
BpuMI	CCSGG	5 cut(s)	242, 368, 484, 485, 1048
BsaBI	GATNNNNATC	2 cut(s)	568, 1101
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	6 cut(s)	482, 483, 522, 644, 697, 763
BsaXI	ACNNNNNCTCC	6 cut(s)	180, 210, 1012, 1042, 1105, 1135
Bsc4I	CCNNNNNNNGG	2 cut(s)	615, 838
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	774, 856
Bse3DI	GCAATG	2 cut(s)	97, 955
Bse8I	GATNNNNATC	2 cut(s)	568, 1101
BseBI	CCWGG	2 cut(s)	699, 765
BseDI	CCNNGG	6 cut(s)	482, 483, 522, 644, 697, 763
BseGI	GGATG	2 cut(s)	969, 1130
BseJI	GATNNNNATC	2 cut(s)	568, 1101
BseLI	CCNNNNNNNGG	2 cut(s)	615, 838
BseMI	GCAATG	2 cut(s)	97, 955
BseMII	CTCAG	2 cut(s)	243, 369
BseNI	ACTGG	2 cut(s)	774, 856
BseRI	GAGGAG	2 cut(s)	80, 1113
BseXI	GCAGC	1 cut(s)	988
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	2 cut(s)	218, 344
BshNI	GGYRCC	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	72
BsiHKCI	CYCGRG	2 cut(s)	29, 483
BsiSI	CCGG	5 cut(s)	126, 242, 368, 484, 1047
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	2 cut(s)	615, 838
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	733
BsnI	GGCC	2 cut(s)	218, 344
Bso31I	GGTCTC	1 cut(s)	45
BsoBI	CYCGRG	2 cut(s)	29, 483
Bsp1286I	GDGCHC	2 cut(s)	72, 621
BspACI	CCGC	3 cut(s)	123, 653, 1082
BspANI	GGCC	2 cut(s)	218, 344
BspCNI	CTCAG	2 cut(s)	244, 370
BspLI	GGNNCC	3 cut(s)	76, 1122, 1164
BspMAI	CTGCAG	1 cut(s)	1006
BspPI	GGATC	7 cut(s)	232, 295, 358, 421, 571, 635, 1110
BspT107I	GGYRCC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	97, 955
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	774, 856
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	6 cut(s)	482, 483, 522, 644, 697, 763
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	699, 765
Bst4CI	ACNGT	1 cut(s)	1117
Bst6I	CTCTTC	2 cut(s)	128, 534
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	3 cut(s)	252, 378, 845
BstF5I	GGATG	2 cut(s)	969, 1130
BstMAI	GTCTC	1 cut(s)	45
BstMCI	CGRYCG	1 cut(s)	558
BstNI	CCWGG	2 cut(s)	699, 765
BstSCI	CCNGG	7 cut(s)	240, 366, 482, 483, 697, 763, 1046
BstSFI	CTRYAG	2 cut(s)	865, 1002
BstV1I	GCAGC	1 cut(s)	988
BstXI	CCANNNNNNTGG	1 cut(s)	764
BsuRI	GGCC	2 cut(s)	218, 344
BtsCI	GGATG	2 cut(s)	969, 1130
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	23, 781
Cac8I	GCNNGC	1 cut(s)	684
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	3 cut(s)	216, 342, 1163
Cfr9I	CCCGGG	1 cut(s)	483
CseI	GACGC	2 cut(s)	23, 128
CviAII	CATG	2 cut(s)	1172, 1193
DdeI	CTNAG	3 cut(s)	252, 378, 845
Eam1104I	CTCTTC	2 cut(s)	128, 534
EarI	CTCTTC	2 cut(s)	128, 534
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	72, 621
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	1163
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	862, 1158
Eco88I	CYCGRG	2 cut(s)	29, 483
EcoICRI	GAGCTC	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	697, 763
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	2 cut(s)	72, 621
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	2 cut(s)	1175, 1196
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	2 cut(s)	1171, 1192
FauI	CCCGC	1 cut(s)	646
FbaI	TGATCA	2 cut(s)	451, 577
Fnu4HI	GCNGC	2 cut(s)	123, 1002
FokI	GGATG	2 cut(s)	976, 1117
FriOI	GRGCYC	2 cut(s)	72, 621
Fsp4HI	GCNGC	2 cut(s)	123, 1002
FspBI	CTAG	5 cut(s)	614, 723, 729, 798, 1023
GluI	GCNGC	2 cut(s)	123, 1002
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	218, 344
HapII	CCGG	5 cut(s)	126, 242, 368, 484, 1047
HgaI	GACGC	2 cut(s)	23, 128
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	1175, 1196
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	7 cut(s)	209, 335, 488, 518, 896, 910, 995
HpaII	CCGG	5 cut(s)	126, 242, 368, 484, 1047
HphI	GGTGA	4 cut(s)	141, 408, 613, 902
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	6 cut(s)	45, 118, 274, 400, 645, 1107
Hpy8I	GTNNAC	1 cut(s)	745
Hpy99I	CGWCG	2 cut(s)	39, 122
HpyAV	CCTTC	2 cut(s)	80, 185
HpyCH4III	ACNGT	1 cut(s)	1117
HpyCH4IV	ACGT	1 cut(s)	1067
HpyCH4V	TGCA	3 cut(s)	591, 682, 1004
HpyF3I	CTNAG	3 cut(s)	252, 378, 845
HpySE526I	ACGT	1 cut(s)	1067
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	1175, 1196
KpnI	GGTACC	1 cut(s)	78
Ksp22I	TGATCA	2 cut(s)	451, 577
LmnI	GCTCC	3 cut(s)	67, 841, 1126
Lsp1109I	GCAGC	1 cut(s)	988
MaeI	CTAG	5 cut(s)	614, 723, 729, 798, 1023
MaeII	ACGT	1 cut(s)	1067
MaeIII	GTNAC	2 cut(s)	477, 635
MboII	GAAGA	5 cut(s)	145, 172, 551, 556, 868
MhlI	GDGCHC	2 cut(s)	72, 621
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	141
MseI	TTAA	3 cut(s)	267, 393, 594
MspI	CCGG	5 cut(s)	126, 242, 368, 484, 1047
MspR9I	CCNGG	7 cut(s)	242, 368, 484, 485, 699, 765, 1048
MvaI	CCWGG	2 cut(s)	699, 765
NciI	CCSGG	5 cut(s)	242, 368, 484, 485, 1048
NlaIII	CATG	2 cut(s)	1175, 1196
NlaIV	GGNNCC	3 cut(s)	76, 1122, 1164
PaeR7I	CTCGAG	1 cut(s)	29
PfeI	GAWTC	6 cut(s)	209, 335, 488, 896, 910, 995
PfoI	TCCNGGA	3 cut(s)	240, 366, 1046
PkrI	GCNGC	2 cut(s)	124, 1003
Ple19I	CGATCG	1 cut(s)	558
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PshBI	ATTAAT	1 cut(s)	594
PsiI	TTATAA	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	697, 763
PspGI	CCWGG	2 cut(s)	697, 763
PspN4I	GGNNCC	3 cut(s)	76, 1122, 1164
PspPI	GGNCC	3 cut(s)	216, 342, 1163
PspXI	VCTCGAGB	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	1006
PvuI	CGATCG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	267, 393, 594
SatI	GCNGC	2 cut(s)	123, 1002
Sau96I	GGNCC	3 cut(s)	216, 342, 1163
ScaI	AGTACT	7 cut(s)	174, 727, 793, 808, 850, 871, 1027
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	7 cut(s)	242, 368, 484, 485, 699, 765, 1048
SduI	GDGCHC	2 cut(s)	72, 621
SfcI	CTRYAG	2 cut(s)	865, 1002
Sfr274I	CTCGAG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	1163
SlaI	CTCGAG	1 cut(s)	29
SmaI	CCCGGG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SpeI	ACTAGT	4 cut(s)	722, 728, 797, 1022
SsiI	CCGC	3 cut(s)	123, 653, 1082
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	5 cut(s)	614, 723, 729, 798, 1023
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	7 cut(s)	240, 366, 482, 483, 697, 763, 1046
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	1117
TaiI	ACGT	1 cut(s)	1070
TaqI	TCGA	7 cut(s)	30, 158, 198, 324, 554, 558, 1077
TaqII	GACCGA	1 cut(s)	27
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	6 cut(s)	209, 335, 488, 896, 910, 995
Tru1I	TTAA	3 cut(s)	267, 393, 594
Tru9I	TTAA	3 cut(s)	267, 393, 594
TscAI	CASTG	2 cut(s)	30, 781
TseI	GCWGC	1 cut(s)	1001
TspDTI	ATGAA	6 cut(s)	17, 237, 363, 909, 909, 1146
TspGWI	ACGGA	1 cut(s)	476
TspMI	CCCGGG	1 cut(s)	483
TspRI	CASTG	2 cut(s)	30, 781
VpaK11BI	GGWCC	1 cut(s)	1163
VspI	ATTAAT	1 cut(s)	594
XapI	RAATTY	3 cut(s)	278, 404, 1109
XhoI	CTCGAG	1 cut(s)	29
XmaI	CCCGGG	1 cut(s)	483
XspI	CTAG	5 cut(s)	614, 723, 729, 798, 1023
ZrmI	AGTACT	7 cut(s)	174, 727, 793, 808, 850, 871, 1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.