Rmu_sc0040129.1_g000001

Alpha beta hydrolase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040129.1
OG0006460
Physical Location & Seq
Forward (+)
1 .. 1200
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040129.1_g000001.1.cds

Sequence Viewer

Length: 370 bp
gtatgactattcagggtatgggcaatcatctggaaaggcaagtgagcagaatacatatgcagatattgaagctgcatataagtgtcttgaagaaagctatggtaccaagcaggaagatatcattctctatggtcaatctgttggaagtggcccgactttggatcttgctgctcggctgcctcagttaagagctgttgttctgcacagtcccatcctatctggtttaagagtcatgtatcctgtaaagcgtacatactggtttgacatttataagaatattgataagattccactggtcaattgtcctgttctcatcattcatgtaagtaattctgctccagtttcttcaactttagaattgcatctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

122

Amino Acids

13.53

Weight (kDa)

5.86

Isoelectric Point (pI)

64.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 271
Acc65I GGTACC 1 cut(s) 102
AccB1I GGYRCC 1 cut(s) 102
AclWI GGATC 1 cut(s) 169
AfaI GTAC 2 cut(s) 104, 251
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 3 cut(s) 69, 90, 349
AluBI AGCT 3 cut(s) 72, 97, 192
AluI AGCT 3 cut(s) 72, 97, 192
AlwI GGATC 1 cut(s) 169
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 3 cut(s) 72, 168, 176
Asp718I GGTACC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 59, 155, 163
BccI CCATC 1 cut(s) 219
BciVI GTATCC 1 cut(s) 247
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 3 cut(s) 73, 169, 177
BlsI GCNGC 3 cut(s) 74, 170, 178
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 3 cut(s) 261, 298, 339
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 3 cut(s) 261, 298, 339
BseXI GCAGC 3 cut(s) 59, 155, 163
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 1 cut(s) 151
BshNI GGYRCC 1 cut(s) 102
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 161
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 102
BsrI ACTGG 3 cut(s) 261, 298, 339
BssMI GATC 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 164
BstMBI GATC 1 cut(s) 161
BstV1I GCAGC 3 cut(s) 59, 155, 163
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 103, 250
CviAII CATG 2 cut(s) 233, 321
CviJI RGCY 5 cut(s) 72, 97, 151, 176, 192
CviKI_1 RGCY 5 cut(s) 72, 97, 151, 176, 192
CviQI GTAC 2 cut(s) 103, 250
DdeI CTNAG 1 cut(s) 181
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 119
EcoRV GATATC 1 cut(s) 119
FaeI CATG 2 cut(s) 236, 324
FaqI GGGAC 1 cut(s) 193
FatI CATG 2 cut(s) 232, 320
FauNDI CATATG 1 cut(s) 56
Fnu4HI GCNGC 3 cut(s) 73, 169, 177
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 73, 169, 177
GluI GCNGC 3 cut(s) 73, 169, 177
GsuI CTGGAG 1 cut(s) 322
HaeIII GGCC 1 cut(s) 151
Hin1II CATG 2 cut(s) 236, 324
HinfI GANTC 2 cut(s) 229, 287
Hpy188III TCNNGA 2 cut(s) 31, 87
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 4 cut(s) 60, 75, 203, 362
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 2 cut(s) 236, 324
KpnI GGTACC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 8 cut(s) 16, 96, 205, 242, 253, 279, 319, 352
Lsp1109I GCAGC 3 cut(s) 59, 155, 163
MalI GATC 1 cut(s) 163
MboI GATC 1 cut(s) 161
MboII GAAGA 3 cut(s) 102, 126, 337
MfeI CAATTG 1 cut(s) 299
MflI RGATCY 1 cut(s) 161
MluCI AATT 3 cut(s) 299, 329, 357
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 1 cut(s) 190
MseI TTAA 2 cut(s) 186, 225
MslI CAYNNNNRTG 1 cut(s) 80
MunI CAATTG 1 cut(s) 299
NdeI CATATG 1 cut(s) 56
NdeII GATC 1 cut(s) 161
NlaIII CATG 2 cut(s) 236, 324
NlaIV GGNNCC 1 cut(s) 104
NmeAIII GCCGAG 1 cut(s) 152
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 3 cut(s) 74, 170, 178
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PsiI TTATAA 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 161
RsaI GTAC 2 cut(s) 104, 251
RsaNI GTAC 2 cut(s) 103, 250
RseI CAYNNNNRTG 1 cut(s) 80
SaqAI TTAA 2 cut(s) 186, 225
SatI GCNGC 3 cut(s) 73, 169, 177
Sau3AI GATC 1 cut(s) 161
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 238
SetI ASST 3 cut(s) 74, 99, 194
SmiMI CAYNNNNRTG 1 cut(s) 80
Sse9I AATT 3 cut(s) 299, 329, 357
SspI AATATT 1 cut(s) 278
TaaI ACNGT 1 cut(s) 207
TasI AATT 3 cut(s) 299, 329, 357
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 186, 225
Tru9I TTAA 2 cut(s) 186, 225
TscAI CASTG 1 cut(s) 298
TseI GCWGC 3 cut(s) 72, 168, 176
TspDTI ATGAA 1 cut(s) 309
TspRI CASTG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.