Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Forward (+)

89712956 .. 89715869

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG676200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGTGGCGTGACGTCATCCATGGCGGCCAAGTTCGCCTTTTTCCCGCCGAACCCGCCGTCGTACAAGCTCATCACCGACGAGCTGACGGGGCTGTTGCTGCTGAGCCCATTTCCGCACAGGGAAAACGTGGAGGTTCTGAAGCTGCCGACTCGGCGCGGCACTGAGGTGGTGGCTATTTACATTAGGCACCCTTTGGCCACTTCTACTCTGCTTTACTCTCACGGCAACGCCGCCGATCTGGGCCAGATGTATGAGCTCTTCATCGAGCTCAGCATCCATTTGAGGGCAAGTGAGCAGAATACATATGCAGATATTGAAGCTGCATATAAGTGTCTTGAAGAAAGCTATGGTACCAAGCAGGAAGATATCATTCTCTATGGTCAATCTGTTGGAAGTGGCCCGACTTTGGATCTTGCTGCTCGGCTGCCTCAGTTAAGAGCTGTTGTTCTGCACAGTCCCATCCTATCTGGTTTAAGAGTCATGTATCCTGTAAAGCGTACATACTGGTTTGACATTTATAAGAATATTGATAAGATTCCACTGGTCAATTGTCCTGTTCTCATCATTCATGGAACTGCAGATGAAGTAGTTGACTGCTCTCATGGCAAGCAACTGTGGGAGTTATGTAAAGAGAAGTATGAACCACTATGGCTTAAAGGAGGCAACCACTGTGATATAGAACTGTATCCCGAGTACATCAGGCATCTCAAGAAGTTCATTTCAACTGTCGAGAAGTCTCCTTCCCAAAGATACAGTTCTAGGAGAAGCACAGATCAATTTGAGCAGCCTCGGAAGAGTACTGATGTTTACGAAGTTTCTAGAAAGAGCACTGATCGAAGAGATAAACCAAAGAAGAGCACTGATAGACCTGAGAAACTGAAAAACCAGTTCATTAGTGCTGATAAACTAGAAAAATTAAAAGTATCCTTTGACCATATGGACAGGTCTCGGAGAAGCGTGGACTGCCATGAGAAGTCCAGAAAAAGTGTCGACCACCAACTGGATAGAGCACGGAAGAGTGTGGATCGATTGGATAGAATACGGAGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

351

Amino Acids

40.31

Weight (kDa)

9.08

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
AatII	GACGTC	1 cut(s)	17
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	2 cut(s)	189, 353
AccB7I	CCANNNNNTGG	1 cut(s)	1003
AccI	GTMKAC	1 cut(s)	993
AccII	CGCG	1 cut(s)	159
AciI	CCGC	6 cut(s)	26, 47, 56, 116, 159, 234
AclWI	GGATC	2 cut(s)	420, 1035
AcoI	YGGCCR	2 cut(s)	27, 198
AcuI	CTGAAG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	5 cut(s)	65, 355, 502, 698, 802
AfiI	CCNNNNNNNGG	3 cut(s)	286, 409, 1003
AgsI	TTSAA	3 cut(s)	320, 341, 726
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	8 cut(s)	70, 85, 145, 259, 271, 323, 348, 443
AluI	AGCT	8 cut(s)	70, 85, 145, 259, 271, 323, 348, 443
Alw21I	GWGCWC	5 cut(s)	261, 273, 833, 863, 1015
Alw26I	GTCTC	2 cut(s)	744, 954
AlwI	GGATC	2 cut(s)	420, 1035
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	4 cut(s)	27, 198, 244, 400
ApeKI	GCWGC	6 cut(s)	100, 145, 323, 419, 427, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
Asp718I	GGTACC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	244, 401
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	692
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	189, 353
BanII	GRGCYC	3 cut(s)	110, 261, 273
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
Bbv12I	GWGCWC	5 cut(s)	261, 273, 833, 863, 1015
BbvI	GCAGC	6 cut(s)	87, 132, 310, 406, 414, 799
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	2 cut(s)	43, 241
BciVI	GTATCC	3 cut(s)	498, 699, 937
BcoDI	GTCTC	2 cut(s)	744, 954
BfaI	CTAG	3 cut(s)	762, 822, 911
BfmI	CTRYAG	1 cut(s)	579
BfuI	GTATCC	3 cut(s)	498, 699, 937
BglI	GCCNNNNNGGC	1 cut(s)	154
BisI	GCNGC	9 cut(s)	27, 101, 146, 160, 234, 324, 420, 428, 788
BlpI	GCTNAGC	2 cut(s)	104, 272
BlsI	GCNGC	9 cut(s)	28, 102, 147, 161, 235, 325, 421, 429, 789
BmcAI	AGTACT	1 cut(s)	802
BmeT110I	CYCGRG	1 cut(s)	692
BmgT120I	GGNCC	2 cut(s)	244, 401
BmiI	GGNNCC	2 cut(s)	191, 355
BmsI	GCATC	2 cut(s)	285, 715
Bpu1102I	GCTNAGC	2 cut(s)	104, 272
BpuEI	CTTGAG	1 cut(s)	695
Bsa29I	ATCGAT	1 cut(s)	1030
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	954
BsaJI	CCNNGG	2 cut(s)	21, 791
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 409, 1003
Bse1I	ACTGG	4 cut(s)	512, 549, 889, 1008
BseCI	ATCGAT	1 cut(s)	1030
BseDI	CCNNGG	2 cut(s)	21, 791
BseGI	GGATG	3 cut(s)	17, 276, 462
BseLI	CCNNNNNNNGG	3 cut(s)	286, 409, 1003
BseMII	CTCAG	5 cut(s)	95, 156, 286, 446, 864
BseNI	ACTGG	4 cut(s)	512, 549, 889, 1008
BseXI	GCAGC	6 cut(s)	87, 132, 310, 406, 414, 799
BsgI	GTGCAG	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	4 cut(s)	29, 200, 246, 402
BshNI	GGYRCC	2 cut(s)	189, 353
BshVI	ATCGAT	1 cut(s)	1030
BsiHKAI	GWGCWC	5 cut(s)	261, 273, 833, 863, 1015
BsiHKCI	CYCGRG	1 cut(s)	692
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	286, 409, 1003
BsmAI	GTCTC	2 cut(s)	744, 954
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	4 cut(s)	29, 200, 246, 402
Bso31I	GGTCTC	1 cut(s)	954
BsoBI	CYCGRG	1 cut(s)	692
Bsp1286I	GDGCHC	6 cut(s)	110, 261, 273, 833, 863, 1015
Bsp143I	GATC	5 cut(s)	238, 412, 775, 835, 1027
Bsp1720I	GCTNAGC	2 cut(s)	104, 272
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	6 cut(s)	26, 47, 56, 116, 159, 234
BspANI	GGCC	4 cut(s)	29, 200, 246, 402
BspCNI	CTCAG	5 cut(s)	96, 157, 285, 445, 865
BspDI	ATCGAT	1 cut(s)	1030
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	191, 355
BspMAI	CTGCAG	1 cut(s)	583
BspPI	GGATC	2 cut(s)	420, 1035
BspQI	GCTCTTC	2 cut(s)	266, 851
BspT107I	GGYRCC	2 cut(s)	189, 353
BspTNI	GGTCTC	1 cut(s)	954
BsrI	ACTGG	4 cut(s)	512, 549, 889, 1008
BssECI	CCNNGG	2 cut(s)	21, 791
BssMI	GATC	5 cut(s)	238, 412, 775, 835, 1027
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	6 cut(s)	458, 618, 674, 687, 730, 758
Bst6I	CTCTTC	5 cut(s)	266, 791, 835, 851, 1013
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	611
BstDEI	CTNAG	5 cut(s)	104, 165, 272, 432, 873
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	17, 276, 462
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	5 cut(s)	241, 415, 778, 838, 1030
BstMAI	GTCTC	2 cut(s)	744, 954
BstMBI	GATC	5 cut(s)	238, 412, 775, 835, 1027
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 55, 91, 100, 154, 606, 966
BstSFI	CTRYAG	1 cut(s)	579
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	6 cut(s)	87, 132, 310, 406, 414, 799
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
Bsu15I	ATCGAT	1 cut(s)	1030
BsuI	GTATCC	3 cut(s)	498, 699, 937
BsuRI	GGCC	4 cut(s)	29, 200, 246, 402
BsuTUI	ATCGAT	1 cut(s)	1030
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	17, 276, 462
BtsIMutI	CAGTG	5 cut(s)	162, 542, 670, 831, 861
Cac8I	GCNNGC	1 cut(s)	611
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	244, 401
ClaI	ATCGAT	1 cut(s)	1030
Csp6I	GTAC	5 cut(s)	64, 354, 501, 697, 801
CviAII	CATG	5 cut(s)	22, 484, 572, 605, 971
CviQI	GTAC	5 cut(s)	64, 354, 501, 697, 801
DdeI	CTNAG	5 cut(s)	104, 165, 272, 432, 873
DpnI	GATC	5 cut(s)	240, 414, 777, 837, 1029
DpnII	GATC	5 cut(s)	238, 412, 775, 835, 1027
EaeI	YGGCCR	2 cut(s)	27, 198
Eam1104I	CTCTTC	5 cut(s)	266, 791, 835, 851, 1013
EarI	CTCTTC	5 cut(s)	266, 791, 835, 851, 1013
Ecl136II	GAGCTC	2 cut(s)	259, 271
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	3 cut(s)	110, 261, 273
Eco31I	GGTCTC	1 cut(s)	954
Eco32I	GATATC	1 cut(s)	370
Eco53kI	GAGCTC	2 cut(s)	259, 271
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	692
EcoICRI	GAGCTC	2 cut(s)	259, 271
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	3 cut(s)	110, 261, 273
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	5 cut(s)	25, 487, 575, 608, 974
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	5 cut(s)	21, 483, 571, 604, 970
FauI	CCCGC	2 cut(s)	54, 63
FauNDI	CATATG	2 cut(s)	307, 939
FblI	GTMKAC	1 cut(s)	993
Fnu4HI	GCNGC	9 cut(s)	27, 101, 146, 160, 234, 324, 420, 428, 788
FokI	GGATG	3 cut(s)	4, 263, 449
FriOI	GRGCYC	3 cut(s)	110, 261, 273
Fsp4HI	GCNGC	9 cut(s)	27, 101, 146, 160, 234, 324, 420, 428, 788
FspBI	CTAG	3 cut(s)	762, 822, 911
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	9 cut(s)	27, 101, 146, 160, 234, 324, 420, 428, 788
HaeIII	GGCC	4 cut(s)	29, 200, 246, 402
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	5 cut(s)	25, 487, 575, 608, 974
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	2 cut(s)	595, 994
HindII	GTYRAC	2 cut(s)	595, 994
HinfI	GANTC	3 cut(s)	151, 480, 538
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	4 cut(s)	595, 811, 964, 994
Hpy188I	TCNGA	3 cut(s)	141, 795, 954
Hpy188III	TCNNGA	6 cut(s)	338, 692, 712, 733, 822, 981
Hpy8I	GTNNAC	4 cut(s)	595, 811, 964, 994
Hpy99I	CGWCG	2 cut(s)	64, 83
HpyAV	CCTTC	1 cut(s)	753
HpyCH4III	ACNGT	6 cut(s)	458, 618, 674, 687, 730, 758
HpyCH4IV	ACGT	2 cut(s)	14, 129
HpyCH4V	TGCA	4 cut(s)	311, 326, 454, 581
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 55, 91, 100, 154, 606, 966
HpyF3I	CTNAG	5 cut(s)	104, 165, 272, 432, 873
HpySE526I	ACGT	2 cut(s)	14, 129
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	5 cut(s)	25, 487, 575, 608, 974
HspAI	GCGC	1 cut(s)	157
KpnI	GGTACC	1 cut(s)	357
Kzo9I	GATC	5 cut(s)	238, 412, 775, 835, 1027
LguI	GCTCTTC	2 cut(s)	266, 851
Lsp1109I	GCAGC	6 cut(s)	87, 132, 310, 406, 414, 799
LweI	GCATC	2 cut(s)	285, 715
MaeI	CTAG	3 cut(s)	762, 822, 911
MaeII	ACGT	2 cut(s)	14, 129
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	5 cut(s)	240, 414, 777, 837, 1029
MboI	GATC	5 cut(s)	238, 412, 775, 835, 1027
MboII	GAAGA	7 cut(s)	253, 353, 377, 808, 852, 868, 1030
MfeI	CAATTG	1 cut(s)	550
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	6 cut(s)	110, 261, 273, 833, 863, 1015
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	3 cut(s)	550, 779, 917
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	145, 489
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	6 cut(s)	127, 160, 279, 441, 656, 801
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	4 cut(s)	437, 476, 657, 920
MslI	CAYNNNNRTG	2 cut(s)	167, 331
Msp20I	TGGCCA	1 cut(s)	200
MunI	CAATTG	1 cut(s)	550
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	7 cut(s)	35, 55, 91, 100, 154, 606, 966
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	2 cut(s)	307, 939
NdeII	GATC	5 cut(s)	238, 412, 775, 835, 1027
NlaIII	CATG	5 cut(s)	25, 487, 575, 608, 974
NlaIV	GGNNCC	2 cut(s)	191, 355
NmeAIII	GCCGAG	2 cut(s)	133, 403
NmuCI	GTSAC	1 cut(s)	10
OliI	CACNNNNGTG	1 cut(s)	167
PciSI	GCTCTTC	2 cut(s)	266, 851
PfeI	GAWTC	1 cut(s)	538
PflMI	CCANNNNNTGG	1 cut(s)	1003
PkrI	GCNGC	9 cut(s)	28, 102, 147, 161, 235, 325, 421, 429, 789
PleI	GAGTC	2 cut(s)	145, 488
PpsI	GAGTC	2 cut(s)	145, 488
PsiI	TTATAA	1 cut(s)	522
Psp124BI	GAGCTC	2 cut(s)	261, 273
PspN4I	GGNNCC	2 cut(s)	191, 355
PspPI	GGNCC	2 cut(s)	244, 401
PstI	CTGCAG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	5 cut(s)	65, 355, 502, 698, 802
RsaNI	GTAC	5 cut(s)	64, 354, 501, 697, 801
RseI	CAYNNNNRTG	2 cut(s)	167, 331
SacI	GAGCTC	2 cut(s)	261, 273
SalI	GTCGAC	1 cut(s)	992
SapI	GCTCTTC	2 cut(s)	266, 851
SaqAI	TTAA	4 cut(s)	437, 476, 657, 920
SatI	GCNGC	9 cut(s)	27, 101, 146, 160, 234, 324, 420, 428, 788
Sau3AI	GATC	5 cut(s)	238, 412, 775, 835, 1027
Sau96I	GGNCC	2 cut(s)	244, 401
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	2 cut(s)	145, 489
SduI	GDGCHC	6 cut(s)	110, 261, 273, 833, 863, 1015
SfaNI	GCATC	2 cut(s)	285, 715
SfcI	CTRYAG	1 cut(s)	579
SmiMI	CAYNNNNRTG	2 cut(s)	167, 331
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	3 cut(s)	550, 779, 917
SsiI	CCGC	6 cut(s)	26, 47, 56, 116, 159, 234
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	3 cut(s)	762, 822, 911
SstI	GAGCTC	2 cut(s)	261, 273
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	6 cut(s)	458, 618, 674, 687, 730, 758
TaiI	ACGT	2 cut(s)	17, 132
TaqI	TCGA	5 cut(s)	267, 732, 838, 993, 1030
TasI	AATT	3 cut(s)	550, 779, 917
TatI	WGTACW	2 cut(s)	696, 800
TauI	GCSGC	3 cut(s)	29, 162, 236
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	4 cut(s)	437, 476, 657, 920
Tru9I	TTAA	4 cut(s)	437, 476, 657, 920
TscAI	CASTG	5 cut(s)	169, 549, 677, 838, 868
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	6 cut(s)	100, 145, 323, 419, 427, 787
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	6 cut(s)	253, 560, 600, 657, 709, 883
TspGWI	ACGGA	1 cut(s)	1030
TspRI	CASTG	5 cut(s)	169, 549, 677, 838, 868
Van91I	CCANNNNNTGG	1 cut(s)	1003
XbaI	TCTAGA	1 cut(s)	821
XmiI	GTMKAC	1 cut(s)	993
XspI	CTAG	3 cut(s)	762, 822, 911
ZraI	GACGTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.