Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Reverse (-)

1041983 .. 1044348

Gene Structure 2366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01690.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGTGGGGTGACGTCGTCCATGGCGGCCAAGTTCGCCTTTTTCCCACCGAACCCACCTTCCTACAAGCTCATCACAGACGACCACACCGGCCTCCTGCTTCTCAGCCCCTTCCCTCACCGGGAAAACGTGGAGGTTCTGAAACTGCCGACCCGCCGTGGCACCGAGGTTGTGGCAATCTACATTCGCCACCCTTTGGCCACTTCCACTCTGCTCTACTCCCACGGTAACGCCGCCGATCTGGGCCAGATGTACGAGCTCTTCATCGAATTGAGCATCCACCTGCGCGTCAATCTCATGGGGTACGACTATTCGGGGTATGGGCAATCAACTGGAAAGGCAAGCGAGCAGAATACATATGCAGATATTGAAGCTGCATATAAGTGTCTTGAAGAATGCTATGGTACTAAGCAGGAAGATATCATTCTCTATGGCCAATCCGTTGGAAGTGGCCCCACGTTGGATCTTGCTGCTCGGCTGCCTCAGTTAAGAGCTGTTGTCTTGCATAGTCCCATACTTTCTGGTTTAAGGGTCATGTATCCTGTAAAGCGTTCATACTGGTTTGACATTTATAAGGGGACTGCGGATGAAGTAGTCGATTGTTCTCATGGCAAGCAACTCTGGGAACTGTGTAAAGAGAAATATGAACCACTATGGCTTAAAGGAGGAAACCACTGTGATTTAGAGCTCTATCCTGAGTATATCAGACATCTCAAGAAGTTCATATCAACCGTTGAGAAGTCTCCTTCCCAGAGATACAGTTCTAGGAGAAGCACAGACCAGTTTGAGCAGCCTCGGAAGAGTACTGATGTTTACGAAGTTTCAAGGAAGAGCGGGATCGATCGAAGGGAGAAACCGAGAAAGAGCACTGATAGGCCTGAAAAACTGAAAAATCAATTCATCAGTGCTGATAAACTAGAAAAACTAAGAGTATCTTTTGACCACATGGAAAGGTCACGGAGAAGCGTGGACTGCCATGAGAAGTCTAGAAAAAGTATCGACCACCAAATGGACAGAGCACGGAAGAGTGTGGATCGATTGGATAGAATACGAACTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

354

Amino Acids

40.56

Weight (kDa)

9.07

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AarI	CACCTGC	1 cut(s)	291
AatII	GACGTC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	161
AccB7I	CCANNNNNTGG	2 cut(s)	196, 1009
AccBSI	CCGCTC	1 cut(s)	834
AccII	CGCG	1 cut(s)	288
AciI	CCGC	5 cut(s)	26, 154, 234, 584, 834
AclWI	GGATC	3 cut(s)	471, 845, 1041
AcoI	YGGCCR	3 cut(s)	27, 198, 433
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	4 cut(s)	254, 305, 406, 805
AfiI	CCNNNNNNNGG	4 cut(s)	121, 196, 460, 1009
AgsI	TTSAA	3 cut(s)	371, 392, 825
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	5 cut(s)	70, 259, 374, 494, 688
AluI	AGCT	5 cut(s)	70, 259, 374, 494, 688
Alw21I	GWGCWC	4 cut(s)	261, 690, 869, 1021
Alw26I	GTCTC	1 cut(s)	747
AlwI	GGATC	3 cut(s)	471, 845, 1041
AoxI	GGCC	7 cut(s)	27, 91, 198, 244, 433, 451, 875
ApeKI	GCWGC	4 cut(s)	374, 470, 478, 790
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	244, 452
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	22, 110
BalI	TGGCCA	2 cut(s)	200, 435
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	261, 690
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
Bbv12I	GWGCWC	4 cut(s)	261, 690, 869, 1021
BbvI	GCAGC	4 cut(s)	361, 457, 465, 802
BceAI	ACGGC	1 cut(s)	141
BciVI	GTATCC	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	747
BfaI	CTAG	3 cut(s)	765, 917, 987
BfuAI	ACCTGC	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	549
BisI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 791
BlsI	GCNGC	6 cut(s)	28, 235, 376, 472, 480, 792
BmcAI	AGTACT	1 cut(s)	805
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	244, 452
BmiI	GGNNCC	2 cut(s)	163, 454
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	1 cut(s)	122
Bsa29I	ATCGAT	2 cut(s)	840, 1036
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	5 cut(s)	21, 157, 165, 223, 794
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 196, 460, 1009
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	4 cut(s)	337, 563, 781, 1060
BseCI	ATCGAT	2 cut(s)	840, 1036
BseDI	CCNNGG	5 cut(s)	21, 157, 165, 223, 794
BseGI	GGATG	2 cut(s)	276, 592
BseLI	CCNNNNNNNGG	4 cut(s)	121, 196, 460, 1009
BseMII	CTCAG	3 cut(s)	118, 497, 687
BseNI	ACTGG	4 cut(s)	337, 563, 781, 1060
BseXI	GCAGC	4 cut(s)	361, 457, 465, 802
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	844
BshFI	GGCC	7 cut(s)	29, 93, 200, 246, 435, 453, 877
BshNI	GGYRCC	1 cut(s)	161
BshVI	ATCGAT	2 cut(s)	840, 1036
BsiEI	CGRYCG	1 cut(s)	844
BsiHKAI	GWGCWC	4 cut(s)	261, 690, 869, 1021
BsiSI	CCGG	2 cut(s)	90, 121
BslFI	GGGAC	2 cut(s)	495, 592
BslI	CCNNNNNNNGG	4 cut(s)	121, 196, 460, 1009
BsmAI	GTCTC	1 cut(s)	747
BsmFI	GGGAC	2 cut(s)	495, 592
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	7 cut(s)	29, 93, 200, 246, 435, 453, 877
Bsp1286I	GDGCHC	4 cut(s)	261, 690, 869, 1021
Bsp143I	GATC	5 cut(s)	238, 463, 837, 841, 1033
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	5 cut(s)	26, 154, 234, 584, 834
BspANI	GGCC	7 cut(s)	29, 93, 200, 246, 435, 453, 877
BspCNI	CTCAG	3 cut(s)	117, 496, 688
BspDI	ATCGAT	2 cut(s)	840, 1036
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	163, 454
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	3 cut(s)	471, 845, 1041
BspQI	GCTCTTC	2 cut(s)	266, 824
BspT107I	GGYRCC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	834
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	4 cut(s)	337, 563, 781, 1060
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	5 cut(s)	21, 157, 165, 223, 794
BssMI	GATC	5 cut(s)	238, 463, 837, 841, 1033
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	5 cut(s)	227, 630, 677, 733, 761
Bst6I	CTCTTC	4 cut(s)	266, 794, 824, 1019
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	343, 347, 614
BstDEI	CTNAG	5 cut(s)	104, 408, 483, 696, 926
BstDSI	CCRYGG	3 cut(s)	21, 157, 223
BstF5I	GGATG	2 cut(s)	276, 592
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	5 cut(s)	241, 466, 840, 844, 1036
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	5 cut(s)	238, 463, 837, 841, 1033
BstMCI	CGRYCG	1 cut(s)	844
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 972
BstSCI	CCNGG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	361, 457, 465, 802
BstX2I	RGATCY	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	463
Bsu15I	ATCGAT	2 cut(s)	840, 1036
BsuI	GTATCC	1 cut(s)	549
BsuRI	GGCC	7 cut(s)	29, 93, 200, 246, 435, 453, 877
BsuTUI	ATCGAT	2 cut(s)	840, 1036
BtgI	CCRYGG	3 cut(s)	21, 157, 223
BtsCI	GGATG	2 cut(s)	276, 592
BtsIMutI	CAGTG	3 cut(s)	673, 867, 910
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	343, 347, 614
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	244, 452
ClaI	ATCGAT	2 cut(s)	840, 1036
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	4 cut(s)	253, 304, 405, 804
CviAII	CATG	6 cut(s)	22, 298, 535, 608, 946, 977
CviQI	GTAC	4 cut(s)	253, 304, 405, 804
DdeI	CTNAG	5 cut(s)	104, 408, 483, 696, 926
DpnI	GATC	5 cut(s)	240, 465, 839, 843, 1035
DpnII	GATC	5 cut(s)	238, 463, 837, 841, 1033
EaeI	YGGCCR	3 cut(s)	27, 198, 433
Eam1104I	CTCTTC	4 cut(s)	266, 794, 824, 1019
EarI	CTCTTC	4 cut(s)	266, 794, 824, 1019
Ecl136II	GAGCTC	2 cut(s)	259, 688
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	877
Eco24I	GRGCYC	2 cut(s)	261, 690
Eco32I	GATATC	1 cut(s)	421
Eco53kI	GAGCTC	2 cut(s)	259, 688
EcoICRI	GAGCTC	2 cut(s)	259, 688
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	2 cut(s)	261, 690
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	6 cut(s)	25, 301, 538, 611, 949, 980
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 919, 951
FaqI	GGGAC	2 cut(s)	495, 592
FatI	CATG	6 cut(s)	21, 297, 534, 607, 945, 976
FauI	CCCGC	2 cut(s)	161, 827
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 791
FokI	GGATG	2 cut(s)	263, 599
FriOI	GRGCYC	2 cut(s)	261, 690
Fsp4HI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 791
FspBI	CTAG	3 cut(s)	765, 917, 987
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 791
HaeIII	GGCC	7 cut(s)	29, 93, 200, 246, 435, 453, 877
HapII	CCGG	2 cut(s)	90, 121
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	6 cut(s)	25, 301, 538, 611, 949, 980
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HpaII	CCGG	2 cut(s)	90, 121
HphI	GGTGA	2 cut(s)	22, 110
Hpy166II	GTNNAC	2 cut(s)	814, 970
Hpy188I	TCNGA	3 cut(s)	141, 707, 798
Hpy188III	TCNNGA	4 cut(s)	389, 695, 715, 987
Hpy8I	GTNNAC	2 cut(s)	814, 970
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	69, 121, 756, 840
HpyCH4III	ACNGT	5 cut(s)	227, 630, 677, 733, 761
HpyCH4IV	ACGT	3 cut(s)	14, 129, 458
HpyCH4V	TGCA	3 cut(s)	362, 377, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 972
HpyF3I	CTNAG	5 cut(s)	104, 408, 483, 696, 926
HpySE526I	ACGT	3 cut(s)	14, 129, 458
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	6 cut(s)	25, 301, 538, 611, 949, 980
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	5 cut(s)	238, 463, 837, 841, 1033
LguI	GCTCTTC	2 cut(s)	266, 824
Lsp1109I	GCAGC	4 cut(s)	361, 457, 465, 802
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	3 cut(s)	765, 917, 987
MaeII	ACGT	3 cut(s)	14, 129, 458
MaeIII	GTNAC	3 cut(s)	10, 227, 954
MalI	GATC	5 cut(s)	240, 465, 839, 843, 1035
MbiI	CCGCTC	1 cut(s)	834
MboI	GATC	5 cut(s)	238, 463, 837, 841, 1033
MboII	GAAGA	6 cut(s)	253, 404, 428, 811, 841, 1036
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	4 cut(s)	261, 690, 869, 1021
MlsI	TGGCCA	2 cut(s)	200, 435
MluCI	AATT	2 cut(s)	269, 896
MluNI	TGGCCA	2 cut(s)	200, 435
MmeI	TCCRAC	2 cut(s)	424, 441
MnlI	CCTC	7 cut(s)	104, 126, 127, 160, 492, 659, 804
Mox20I	TGGCCA	2 cut(s)	200, 435
MscI	TGGCCA	2 cut(s)	200, 435
MseI	TTAA	3 cut(s)	488, 527, 660
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	2 cut(s)	200, 435
MspI	CCGG	2 cut(s)	90, 121
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	401
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	35, 972
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	5 cut(s)	238, 463, 837, 841, 1033
NlaIII	CATG	6 cut(s)	25, 301, 538, 611, 949, 980
NlaIV	GGNNCC	2 cut(s)	163, 454
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	2 cut(s)	10, 954
PaqCI	CACCTGC	1 cut(s)	291
PceI	AGGCCT	1 cut(s)	877
PciSI	GCTCTTC	2 cut(s)	266, 824
PctI	GAATGC	1 cut(s)	401
PflFI	GACNNNGTC	1 cut(s)	16
PflMI	CCANNNNNTGG	2 cut(s)	196, 1009
PkrI	GCNGC	6 cut(s)	28, 235, 376, 472, 480, 792
Ple19I	CGATCG	1 cut(s)	844
PsiI	TTATAA	1 cut(s)	573
Psp124BI	GAGCTC	2 cut(s)	261, 690
PspN4I	GGNNCC	2 cut(s)	163, 454
PspPI	GGNCC	2 cut(s)	244, 452
PsuI	RGATCY	1 cut(s)	463
PsyI	GACNNNGTC	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	844
RsaI	GTAC	4 cut(s)	254, 305, 406, 805
RsaNI	GTAC	4 cut(s)	253, 304, 405, 804
RseI	CAYNNNNRTG	1 cut(s)	382
SacI	GAGCTC	2 cut(s)	261, 690
SapI	GCTCTTC	2 cut(s)	266, 824
SaqAI	TTAA	3 cut(s)	488, 527, 660
SatI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 791
Sau3AI	GATC	5 cut(s)	238, 463, 837, 841, 1033
Sau96I	GGNCC	2 cut(s)	244, 452
ScaI	AGTACT	1 cut(s)	805
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	4 cut(s)	261, 690, 869, 1021
SfaNI	GCATC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	2 cut(s)	269, 896
SseBI	AGGCCT	1 cut(s)	877
SsiI	CCGC	5 cut(s)	26, 154, 234, 584, 834
SspMI	CTAG	3 cut(s)	765, 917, 987
SstI	GAGCTC	2 cut(s)	261, 690
StuI	AGGCCT	1 cut(s)	877
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	5 cut(s)	227, 630, 677, 733, 761
TaiI	ACGT	3 cut(s)	17, 132, 461
TaqI	TCGA	6 cut(s)	267, 597, 840, 844, 999, 1036
TasI	AATT	2 cut(s)	269, 896
TatI	WGTACW	1 cut(s)	803
TauI	GCSGC	2 cut(s)	29, 236
Tru1I	TTAA	3 cut(s)	488, 527, 660
Tru9I	TTAA	3 cut(s)	488, 527, 660
TscAI	CASTG	3 cut(s)	680, 874, 910
TseFI	GTSAC	2 cut(s)	10, 954
TseI	GCWGC	4 cut(s)	374, 470, 478, 790
Tsp45I	GTSAC	2 cut(s)	10, 954
TspDTI	ATGAA	6 cut(s)	253, 543, 603, 660, 712, 889
TspGWI	ACGGA	3 cut(s)	430, 973, 1036
TspRI	CASTG	3 cut(s)	680, 874, 910
Tth111I	GACNNNGTC	1 cut(s)	16
Van91I	CCANNNNNTGG	2 cut(s)	196, 1009
XbaI	TCTAGA	1 cut(s)	986
XspI	CTAG	3 cut(s)	765, 917, 987
ZraI	GACGTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.