Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Reverse (-)

1131017 .. 1133598

Gene Structure 2582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g01740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGTGGGGTGACGTCGTCCATGGCGGCCAAGTTCGCCTTTTTCCCACCGAACCCACCTTCGTACAAGCTCATCACAGATGAGCACACCGGGCTCTTGCTTCTCAGTCCCTTCCCTCACCGTGAAAACGTGGAGGTTCTGAAACTCCCGACTCGCCGCGGCACTGAGGTAGTGGCCATCTACATTCGCCACCCTTTGGCCACTTCCACTCTGCTCTACTCCCACGGCAACGCCGCCGATCTGGGCCAGATGTACGAGCTCTTCATCGAATTGAGCATCCACCTGCGCGTTAATCTCATGGGGTACGACTATTCGGGGTATGGGCAATCAACTGGAAAGGCAAGTGAGCAGAATACATATGCAGATATTGAAGCTGCATATAAGTGTCTTGAAGAAAGCTATGGTACTAAGCAGGAAGATATCATTCTCTATGGCCAATCTGTTGGAAGTGGCCCCACGTTGGATCTTGCTGCTCGGCTGCCTCAGTTAAGAGCTGTTGTCCTGCATAGTCCCATACTGTCTGGTTTAAGGGTCATGTATCCTGTAAAGCGTACATACTGGTTCGACATTTATAAGAATATCGACAAAATTCCACTGGTCCATTGTCCTGTTCTCATCATTCACGGGACTGCGGATGAAGTAGTCGATTGCTCTCATGGGAAGCAACTCTGGGAACTGTGTAAAGAGAAGTATGAACCACTATGGCTTAAAGGAGGGAACCACTGTGATTTAGAGCTCTATCCTGAGTATATCAGGCATCTCAAGAAGTTCATATCAACCGTTGAGAAGTCTCCTTCCCAGAGATACAGTTCTAGGAGAAGCACGGACCAGTTCGAGCAGCCTCGGAAGAGTACTGATGTTTACGAAGTTTCAAGGAAGAGCATCGATCGAAGGGAGAAACCGAGGAAGAGCACTGATAGGCCTGAAAAACTGAAAAATCAGTTCATCAGTGCCGATAAACTAGAAAAATTAAGAGTATCTTTCGACCATATGGAAAGGTCTCGGAGAAGCGTGGACTGCCATGAGAAGTCTAGGAAAAGTATCGACCACCAAATGGACAGAGCACGGAAGAGTCTCGATCGGTTGGATAGACTACGAACTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

369

Amino Acids

42.34

Weight (kDa)

9.06

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AarI	CACCTGC	1 cut(s)	291
AatII	GACGTC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	291
AccB7I	CCANNNNNTGG	2 cut(s)	196, 1054
AccII	CGCG	2 cut(s)	159, 288
AciI	CCGC	5 cut(s)	26, 157, 159, 234, 632
AclWI	GGATC	1 cut(s)	471
AcoI	YGGCCR	4 cut(s)	27, 174, 198, 433
AcsI	RAATTY	1 cut(s)	588
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	6 cut(s)	65, 254, 305, 406, 553, 853
AfiI	CCNNNNNNNGG	3 cut(s)	196, 460, 1054
AgsI	TTSAA	3 cut(s)	371, 392, 873
AluBI	AGCT	6 cut(s)	70, 259, 374, 399, 494, 736
AluI	AGCT	6 cut(s)	70, 259, 374, 399, 494, 736
Alw21I	GWGCWC	5 cut(s)	87, 261, 738, 914, 1066
Alw26I	GTCTC	3 cut(s)	795, 1005, 1079
AlwI	GGATC	1 cut(s)	471
AoxI	GGCC	7 cut(s)	27, 174, 198, 244, 433, 451, 920
ApeKI	GCWGC	4 cut(s)	374, 470, 478, 838
ApoI	RAATTY	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	4 cut(s)	244, 452, 598, 826
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	22, 110
AvaII	GGWCC	2 cut(s)	598, 826
BalI	TGGCCA	3 cut(s)	176, 200, 435
BanII	GRGCYC	3 cut(s)	96, 261, 738
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
Bbv12I	GWGCWC	5 cut(s)	87, 261, 738, 914, 1066
BbvI	GCAGC	4 cut(s)	361, 457, 465, 850
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	241
BciVI	GTATCC	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	3 cut(s)	795, 1005, 1079
BfaI	CTAG	3 cut(s)	813, 962, 1032
BfuAI	ACCTGC	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	549
BisI	GCNGC	8 cut(s)	27, 157, 160, 234, 375, 471, 479, 839
BlsI	GCNGC	8 cut(s)	28, 158, 161, 235, 376, 472, 480, 840
BmcAI	AGTACT	1 cut(s)	853
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	2 cut(s)	598, 826
BmgT120I	GGNCC	4 cut(s)	244, 452, 598, 826
BmiI	GGNNCC	2 cut(s)	454, 719
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	3 cut(s)	285, 766, 891
BpuEI	CTTGAG	1 cut(s)	746
BpuMI	CCSGG	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	885
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	1005
BsaJI	CCNNGG	5 cut(s)	21, 157, 223, 842, 902
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 460, 1054
Bse1I	ACTGG	5 cut(s)	337, 563, 600, 829, 1105
BseCI	ATCGAT	1 cut(s)	885
BseDI	CCNNGG	5 cut(s)	21, 157, 223, 842, 902
BseGI	GGATG	2 cut(s)	276, 640
BseLI	CCNNNNNNNGG	3 cut(s)	196, 460, 1054
BseMII	CTCAG	4 cut(s)	118, 156, 497, 735
BseNI	ACTGG	5 cut(s)	337, 563, 600, 829, 1105
BseXI	GCAGC	4 cut(s)	361, 457, 465, 850
Bsh1236I	CGCG	2 cut(s)	159, 288
Bsh1285I	CGRYCG	2 cut(s)	889, 1081
BshFI	GGCC	7 cut(s)	29, 176, 200, 246, 435, 453, 922
BshVI	ATCGAT	1 cut(s)	885
BsiEI	CGRYCG	2 cut(s)	889, 1081
BsiHKAI	GWGCWC	5 cut(s)	87, 261, 738, 914, 1066
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	3 cut(s)	93, 495, 640
BslI	CCNNNNNNNGG	3 cut(s)	196, 460, 1054
BsmAI	GTCTC	3 cut(s)	795, 1005, 1079
BsmFI	GGGAC	3 cut(s)	93, 495, 640
BsnI	GGCC	7 cut(s)	29, 176, 200, 246, 435, 453, 922
Bso31I	GGTCTC	1 cut(s)	1005
Bsp1286I	GDGCHC	6 cut(s)	87, 96, 261, 738, 914, 1066
Bsp143I	GATC	4 cut(s)	238, 463, 886, 1078
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	5 cut(s)	26, 157, 159, 234, 632
BspANI	GGCC	7 cut(s)	29, 176, 200, 246, 435, 453, 922
BspCNI	CTCAG	4 cut(s)	117, 157, 496, 736
BspDI	ATCGAT	1 cut(s)	885
BspFNI	CGCG	2 cut(s)	159, 288
BspLI	GGNNCC	2 cut(s)	454, 719
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	471
BspQI	GCTCTTC	3 cut(s)	266, 872, 902
BspTNI	GGTCTC	1 cut(s)	1005
BsrI	ACTGG	5 cut(s)	337, 563, 600, 829, 1105
BssECI	CCNNGG	5 cut(s)	21, 157, 223, 842, 902
BssMI	GATC	4 cut(s)	238, 463, 886, 1078
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	6 cut(s)	122, 519, 678, 725, 781, 809
Bst6I	CTCTTC	5 cut(s)	266, 842, 872, 902, 1064
BstACI	GRCGYC	1 cut(s)	14
BstDEI	CTNAG	5 cut(s)	104, 165, 408, 483, 744
BstDSI	CCRYGG	3 cut(s)	21, 157, 223
BstF5I	GGATG	2 cut(s)	276, 640
BstFNI	CGCG	2 cut(s)	159, 288
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	4 cut(s)	241, 466, 889, 1081
BstMAI	GTCTC	3 cut(s)	795, 1005, 1079
BstMBI	GATC	4 cut(s)	238, 463, 886, 1078
BstMCI	CGRYCG	2 cut(s)	889, 1081
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 91, 1017
BstSCI	CCNGG	1 cut(s)	89
BstUI	CGCG	2 cut(s)	159, 288
BstV1I	GCAGC	4 cut(s)	361, 457, 465, 850
BstX2I	RGATCY	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	463
Bsu15I	ATCGAT	1 cut(s)	885
BsuI	GTATCC	1 cut(s)	549
BsuRI	GGCC	7 cut(s)	29, 176, 200, 246, 435, 453, 922
BsuTUI	ATCGAT	1 cut(s)	885
BtgI	CCRYGG	3 cut(s)	21, 157, 223
BtsCI	GGATG	2 cut(s)	276, 640
BtsIMutI	CAGTG	5 cut(s)	162, 593, 721, 912, 955
BveI	ACCTGC	1 cut(s)	291
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	4 cut(s)	244, 452, 598, 826
Cfr42I	CCGCGG	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	885
Csp6I	GTAC	6 cut(s)	64, 253, 304, 405, 552, 852
CviAII	CATG	5 cut(s)	22, 298, 535, 656, 1022
CviQI	GTAC	6 cut(s)	64, 253, 304, 405, 552, 852
DdeI	CTNAG	5 cut(s)	104, 165, 408, 483, 744
DpnI	GATC	4 cut(s)	240, 465, 888, 1080
DpnII	GATC	4 cut(s)	238, 463, 886, 1078
EaeI	YGGCCR	4 cut(s)	27, 174, 198, 433
Eam1104I	CTCTTC	5 cut(s)	266, 842, 872, 902, 1064
EarI	CTCTTC	5 cut(s)	266, 842, 872, 902, 1064
Ecl136II	GAGCTC	2 cut(s)	259, 736
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	922
Eco24I	GRGCYC	3 cut(s)	96, 261, 738
Eco31I	GGTCTC	1 cut(s)	1005
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	2 cut(s)	598, 826
Eco53kI	GAGCTC	2 cut(s)	259, 736
EcoICRI	GAGCTC	2 cut(s)	259, 736
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	3 cut(s)	96, 261, 738
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	5 cut(s)	25, 301, 538, 659, 1025
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 964, 996
FaqI	GGGAC	3 cut(s)	93, 495, 640
FatI	CATG	5 cut(s)	21, 297, 534, 655, 1021
FauNDI	CATATG	2 cut(s)	358, 990
Fnu4HI	GCNGC	8 cut(s)	27, 157, 160, 234, 375, 471, 479, 839
FokI	GGATG	2 cut(s)	263, 647
FriOI	GRGCYC	3 cut(s)	96, 261, 738
Fsp4HI	GCNGC	8 cut(s)	27, 157, 160, 234, 375, 471, 479, 839
FspBI	CTAG	3 cut(s)	813, 962, 1032
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	8 cut(s)	27, 157, 160, 234, 375, 471, 479, 839
HaeIII	GGCC	7 cut(s)	29, 176, 200, 246, 435, 453, 922
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	5 cut(s)	25, 301, 538, 659, 1025
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	151, 1072
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	22, 110
Hpy166II	GTNNAC	2 cut(s)	862, 1015
Hpy188I	TCNGA	3 cut(s)	141, 846, 1005
Hpy188III	TCNNGA	5 cut(s)	148, 389, 743, 763, 1076
Hpy8I	GTNNAC	2 cut(s)	862, 1015
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	69, 121, 804, 885
HpyCH4III	ACNGT	6 cut(s)	122, 519, 678, 725, 781, 809
HpyCH4IV	ACGT	3 cut(s)	14, 129, 458
HpyCH4V	TGCA	3 cut(s)	362, 377, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 91, 1017
HpyF3I	CTNAG	5 cut(s)	104, 165, 408, 483, 744
HpySE526I	ACGT	3 cut(s)	14, 129, 458
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	5 cut(s)	25, 301, 538, 659, 1025
HspAI	GCGC	1 cut(s)	286
KspI	CCGCGG	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	238, 463, 886, 1078
LguI	GCTCTTC	3 cut(s)	266, 872, 902
Lsp1109I	GCAGC	4 cut(s)	361, 457, 465, 850
LweI	GCATC	3 cut(s)	285, 766, 891
MaeI	CTAG	3 cut(s)	813, 962, 1032
MaeII	ACGT	3 cut(s)	14, 129, 458
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	4 cut(s)	240, 465, 888, 1080
MboI	GATC	4 cut(s)	238, 463, 886, 1078
MboII	GAAGA	7 cut(s)	253, 404, 428, 859, 889, 919, 1081
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	6 cut(s)	87, 96, 261, 738, 914, 1066
MlsI	TGGCCA	3 cut(s)	176, 200, 435
MluCI	AATT	3 cut(s)	269, 588, 968
MluNI	TGGCCA	3 cut(s)	176, 200, 435
MlyI	GAGTC	2 cut(s)	145, 1081
MmeI	TCCRAC	3 cut(s)	424, 441, 1065
MnlI	CCTC	7 cut(s)	126, 127, 160, 492, 707, 852, 897
Mox20I	TGGCCA	3 cut(s)	176, 200, 435
MscI	TGGCCA	3 cut(s)	176, 200, 435
MseI	TTAA	5 cut(s)	291, 488, 527, 708, 971
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	3 cut(s)	176, 200, 435
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	91
MvnI	CGCG	2 cut(s)	159, 288
MwoI	GCNNNNNNNGC	3 cut(s)	35, 91, 1017
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	2 cut(s)	358, 990
NdeII	GATC	4 cut(s)	238, 463, 886, 1078
NlaIII	CATG	5 cut(s)	25, 301, 538, 659, 1025
NlaIV	GGNNCC	2 cut(s)	454, 719
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	291
PceI	AGGCCT	1 cut(s)	922
PciSI	GCTCTTC	3 cut(s)	266, 872, 902
PflFI	GACNNNGTC	1 cut(s)	16
PflMI	CCANNNNNTGG	2 cut(s)	196, 1054
PkrI	GCNGC	8 cut(s)	28, 158, 161, 235, 376, 472, 480, 840
Ple19I	CGATCG	2 cut(s)	889, 1081
PleI	GAGTC	2 cut(s)	145, 1080
PpsI	GAGTC	2 cut(s)	145, 1080
PsiI	TTATAA	1 cut(s)	573
Psp124BI	GAGCTC	2 cut(s)	261, 738
PspN4I	GGNNCC	2 cut(s)	454, 719
PspPI	GGNCC	4 cut(s)	244, 452, 598, 826
PsuI	RGATCY	1 cut(s)	463
PsyI	GACNNNGTC	1 cut(s)	16
PvuI	CGATCG	2 cut(s)	889, 1081
RsaI	GTAC	6 cut(s)	65, 254, 305, 406, 553, 853
RsaNI	GTAC	6 cut(s)	64, 253, 304, 405, 552, 852
RseI	CAYNNNNRTG	1 cut(s)	382
SacI	GAGCTC	2 cut(s)	261, 738
SacII	CCGCGG	1 cut(s)	160
SapI	GCTCTTC	3 cut(s)	266, 872, 902
SaqAI	TTAA	5 cut(s)	291, 488, 527, 708, 971
SatI	GCNGC	8 cut(s)	27, 157, 160, 234, 375, 471, 479, 839
Sau3AI	GATC	4 cut(s)	238, 463, 886, 1078
Sau96I	GGNCC	4 cut(s)	244, 452, 598, 826
ScaI	AGTACT	1 cut(s)	853
SchI	GAGTC	2 cut(s)	145, 1081
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	6 cut(s)	87, 96, 261, 738, 914, 1066
SfaNI	GCATC	3 cut(s)	285, 766, 891
Sfr303I	CCGCGG	1 cut(s)	160
SgrBI	CCGCGG	1 cut(s)	160
SinI	GGWCC	2 cut(s)	598, 826
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	3 cut(s)	269, 588, 968
SseBI	AGGCCT	1 cut(s)	922
SsiI	CCGC	5 cut(s)	26, 157, 159, 234, 632
SspMI	CTAG	3 cut(s)	813, 962, 1032
SstI	GAGCTC	2 cut(s)	261, 738
StuI	AGGCCT	1 cut(s)	922
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	6 cut(s)	122, 519, 678, 725, 781, 809
TaiI	ACGT	3 cut(s)	17, 132, 461
TasI	AATT	3 cut(s)	269, 588, 968
TatI	WGTACW	1 cut(s)	851
TauI	GCSGC	4 cut(s)	29, 159, 162, 236
Tru1I	TTAA	5 cut(s)	291, 488, 527, 708, 971
Tru9I	TTAA	5 cut(s)	291, 488, 527, 708, 971
TscAI	CASTG	5 cut(s)	169, 600, 728, 919, 955
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	4 cut(s)	374, 470, 478, 838
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	5 cut(s)	253, 651, 708, 760, 934
TspGWI	ACGGA	2 cut(s)	839, 1081
TspRI	CASTG	5 cut(s)	169, 600, 728, 919, 955
Tth111I	GACNNNGTC	1 cut(s)	16
Van91I	CCANNNNNTGG	2 cut(s)	196, 1054
VpaK11BI	GGWCC	2 cut(s)	598, 826
XapI	RAATTY	1 cut(s)	588
XspI	CTAG	3 cut(s)	813, 962, 1032
ZraI	GACGTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.