Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002538.1

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Reverse (-)

58312 .. 61205

Gene Structure 2894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002538.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atggcggccaagttcgcctttttcccgccgaacccgccgtcgtacaagctcatcaccgacgagctgacggggctgttgctgctgagcccatttccgcacagggaaaacgtggaggttctgaagctgccgactcggcgcggcactgaggtggtggctatttacattaggcaccctttggccacttctactctgctttactctcacggcaacgccgccgatctgggccagatgtatgagctcttcatcgagctcagcatccatttgagggttaatctcatggggtatgactattcagggtatgggcaatcatctggaaaggcaagtgagcagaatacatatgcagatattgaagctgcatataagtgtcttgaagaaagctatggtaccaagcaggaagatatcattctctatggtcaatctgttggaagtggcccgactttggatcttgctgctcggctgcctcagttaagagctgttgttctgcacagtcccatcctatctggtttaagagtcatgtatcctgtaaagcgtacatactggtttgacatttataagaatattgataagattccactggtcaattgtcctgttctcatcattcatggaactgcagatgaagtagttgactgctctcatggcaagcaactgtgggagttatgtaaagagaagtatgaaccactatggcttaaaggaggcaaccactgtgatatagaactgtatcccgagtacatcaggcatctcaagaagttcatttcaactgtcgagaagtctccttcccaaagatacagttctaggagaagcacagatcaatttgagcagcctcggaagagtactgatgtttacgaagtttctagaaagagcactgatcgaagagataaaccaaagaagagcactgatagacctgagaaactgaaaaaccagttcattagtgctgataaactagaaaaattaaaagtatcctttgaccatatggacaggtctcggagaagcgtggactgccatgagaagtccagaaaaagtgtcgaccaccaactggatagagcacggaagagtgtggatcgattggatagaatacggagtgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

361

Amino Acids

41.5

Weight (kDa)

9.05

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
Acc65I	GGTACC	1 cut(s)	383
AccB1I	GGYRCC	2 cut(s)	168, 383
AccB7I	CCANNNNNTGG	1 cut(s)	1033
AccI	GTMKAC	1 cut(s)	1023
AccII	CGCG	1 cut(s)	138
AciI	CCGC	6 cut(s)	5, 26, 35, 95, 138, 213
AclWI	GGATC	2 cut(s)	450, 1065
AcoI	YGGCCR	2 cut(s)	6, 177
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	5 cut(s)	44, 385, 532, 728, 832
AfiI	CCNNNNNNNGG	3 cut(s)	265, 439, 1033
AgsI	TTSAA	3 cut(s)	350, 371, 756
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	8 cut(s)	49, 64, 124, 238, 250, 353, 378, 473
AluI	AGCT	8 cut(s)	49, 64, 124, 238, 250, 353, 378, 473
Alw21I	GWGCWC	5 cut(s)	240, 252, 863, 893, 1045
Alw26I	GTCTC	2 cut(s)	774, 984
AlwI	GGATC	2 cut(s)	450, 1065
Ama87I	CYCGRG	1 cut(s)	722
AoxI	GGCC	4 cut(s)	6, 177, 223, 430
ApeKI	GCWGC	6 cut(s)	79, 124, 353, 449, 457, 817
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp718I	GGTACC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	223, 431
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	722
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	168, 383
BanII	GRGCYC	3 cut(s)	89, 240, 252
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
Bbv12I	GWGCWC	5 cut(s)	240, 252, 863, 893, 1045
BbvI	GCAGC	6 cut(s)	66, 111, 340, 436, 444, 829
BccI	CCATC	1 cut(s)	500
BceAI	ACGGC	2 cut(s)	22, 220
BciVI	GTATCC	3 cut(s)	528, 729, 967
BcoDI	GTCTC	2 cut(s)	774, 984
BfaI	CTAG	3 cut(s)	792, 852, 941
BfmI	CTRYAG	1 cut(s)	609
BfuI	GTATCC	3 cut(s)	528, 729, 967
BglI	GCCNNNNNGGC	1 cut(s)	133
BisI	GCNGC	9 cut(s)	6, 80, 125, 139, 213, 354, 450, 458, 818
BlpI	GCTNAGC	2 cut(s)	83, 251
BlsI	GCNGC	9 cut(s)	7, 81, 126, 140, 214, 355, 451, 459, 819
BmcAI	AGTACT	1 cut(s)	832
BmeT110I	CYCGRG	1 cut(s)	722
BmgT120I	GGNCC	2 cut(s)	223, 431
BmiI	GGNNCC	2 cut(s)	170, 385
BmsI	GCATC	2 cut(s)	264, 745
Bpu1102I	GCTNAGC	2 cut(s)	83, 251
BpuEI	CTTGAG	1 cut(s)	725
Bsa29I	ATCGAT	1 cut(s)	1060
BsaI	GGTCTC	1 cut(s)	984
BsaJI	CCNNGG	1 cut(s)	821
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 439, 1033
Bse1I	ACTGG	4 cut(s)	542, 579, 919, 1038
BseCI	ATCGAT	1 cut(s)	1060
BseDI	CCNNGG	1 cut(s)	821
BseGI	GGATG	2 cut(s)	255, 492
BseLI	CCNNNNNNNGG	3 cut(s)	265, 439, 1033
BseMII	CTCAG	5 cut(s)	74, 135, 265, 476, 894
BseNI	ACTGG	4 cut(s)	542, 579, 919, 1038
BseXI	GCAGC	6 cut(s)	66, 111, 340, 436, 444, 829
BsgI	GTGCAG	1 cut(s)	467
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	4 cut(s)	8, 179, 225, 432
BshNI	GGYRCC	2 cut(s)	168, 383
BshVI	ATCGAT	1 cut(s)	1060
BsiHKAI	GWGCWC	5 cut(s)	240, 252, 863, 893, 1045
BsiHKCI	CYCGRG	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	3 cut(s)	265, 439, 1033
BsmAI	GTCTC	2 cut(s)	774, 984
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	4 cut(s)	8, 179, 225, 432
Bso31I	GGTCTC	1 cut(s)	984
BsoBI	CYCGRG	1 cut(s)	722
Bsp1286I	GDGCHC	6 cut(s)	89, 240, 252, 863, 893, 1045
Bsp143I	GATC	5 cut(s)	217, 442, 805, 865, 1057
Bsp1720I	GCTNAGC	2 cut(s)	83, 251
BspACI	CCGC	6 cut(s)	5, 26, 35, 95, 138, 213
BspANI	GGCC	4 cut(s)	8, 179, 225, 432
BspCNI	CTCAG	5 cut(s)	75, 136, 264, 475, 895
BspDI	ATCGAT	1 cut(s)	1060
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	170, 385
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	2 cut(s)	450, 1065
BspQI	GCTCTTC	2 cut(s)	245, 881
BspT107I	GGYRCC	2 cut(s)	168, 383
BspTNI	GGTCTC	1 cut(s)	984
BsrI	ACTGG	4 cut(s)	542, 579, 919, 1038
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	5 cut(s)	217, 442, 805, 865, 1057
Bst4CI	ACNGT	6 cut(s)	488, 648, 704, 717, 760, 788
Bst6I	CTCTTC	5 cut(s)	245, 821, 865, 881, 1043
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	5 cut(s)	83, 144, 251, 462, 903
BstF5I	GGATG	2 cut(s)	255, 492
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	5 cut(s)	220, 445, 808, 868, 1060
BstMAI	GTCTC	2 cut(s)	774, 984
BstMBI	GATC	5 cut(s)	217, 442, 805, 865, 1057
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 34, 70, 79, 133, 636, 996
BstSFI	CTRYAG	1 cut(s)	609
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	6 cut(s)	66, 111, 340, 436, 444, 829
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
Bsu15I	ATCGAT	1 cut(s)	1060
BsuI	GTATCC	3 cut(s)	528, 729, 967
BsuRI	GGCC	4 cut(s)	8, 179, 225, 432
BsuTUI	ATCGAT	1 cut(s)	1060
BtsCI	GGATG	2 cut(s)	255, 492
BtsIMutI	CAGTG	5 cut(s)	141, 572, 700, 861, 891
Cac8I	GCNNGC	1 cut(s)	641
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	223, 431
ClaI	ATCGAT	1 cut(s)	1060
Csp6I	GTAC	5 cut(s)	43, 384, 531, 727, 831
CviAII	CATG	5 cut(s)	277, 514, 602, 635, 1001
CviQI	GTAC	5 cut(s)	43, 384, 531, 727, 831
DdeI	CTNAG	5 cut(s)	83, 144, 251, 462, 903
DpnI	GATC	5 cut(s)	219, 444, 807, 867, 1059
DpnII	GATC	5 cut(s)	217, 442, 805, 865, 1057
EaeI	YGGCCR	2 cut(s)	6, 177
Eam1104I	CTCTTC	5 cut(s)	245, 821, 865, 881, 1043
EarI	CTCTTC	5 cut(s)	245, 821, 865, 881, 1043
Ecl136II	GAGCTC	2 cut(s)	238, 250
Eco24I	GRGCYC	3 cut(s)	89, 240, 252
Eco31I	GGTCTC	1 cut(s)	984
Eco32I	GATATC	1 cut(s)	400
Eco53kI	GAGCTC	2 cut(s)	238, 250
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	722
EcoICRI	GAGCTC	2 cut(s)	238, 250
EcoRV	GATATC	1 cut(s)	400
EcoT38I	GRGCYC	3 cut(s)	89, 240, 252
FaeI	CATG	5 cut(s)	280, 517, 605, 638, 1004
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	5 cut(s)	276, 513, 601, 634, 1000
FauI	CCCGC	2 cut(s)	33, 42
FauNDI	CATATG	2 cut(s)	337, 969
FblI	GTMKAC	1 cut(s)	1023
Fnu4HI	GCNGC	9 cut(s)	6, 80, 125, 139, 213, 354, 450, 458, 818
FokI	GGATG	2 cut(s)	242, 479
FriOI	GRGCYC	3 cut(s)	89, 240, 252
Fsp4HI	GCNGC	9 cut(s)	6, 80, 125, 139, 213, 354, 450, 458, 818
FspBI	CTAG	3 cut(s)	792, 852, 941
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	9 cut(s)	6, 80, 125, 139, 213, 354, 450, 458, 818
HaeIII	GGCC	4 cut(s)	8, 179, 225, 432
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	5 cut(s)	280, 517, 605, 638, 1004
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	2 cut(s)	625, 1024
HindII	GTYRAC	2 cut(s)	625, 1024
HinfI	GANTC	3 cut(s)	130, 510, 568
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	625, 841, 994, 1024
Hpy188I	TCNGA	3 cut(s)	120, 825, 984
Hpy188III	TCNNGA	7 cut(s)	312, 368, 722, 742, 763, 852, 1011
Hpy8I	GTNNAC	4 cut(s)	625, 841, 994, 1024
Hpy99I	CGWCG	2 cut(s)	43, 62
HpyAV	CCTTC	1 cut(s)	783
HpyCH4III	ACNGT	6 cut(s)	488, 648, 704, 717, 760, 788
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	4 cut(s)	341, 356, 484, 611
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 34, 70, 79, 133, 636, 996
HpyF3I	CTNAG	5 cut(s)	83, 144, 251, 462, 903
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	5 cut(s)	280, 517, 605, 638, 1004
HspAI	GCGC	1 cut(s)	136
KpnI	GGTACC	1 cut(s)	387
Kzo9I	GATC	5 cut(s)	217, 442, 805, 865, 1057
LguI	GCTCTTC	2 cut(s)	245, 881
Lsp1109I	GCAGC	6 cut(s)	66, 111, 340, 436, 444, 829
LweI	GCATC	2 cut(s)	264, 745
MaeI	CTAG	3 cut(s)	792, 852, 941
MaeII	ACGT	1 cut(s)	108
MalI	GATC	5 cut(s)	219, 444, 807, 867, 1059
MboI	GATC	5 cut(s)	217, 442, 805, 865, 1057
MboII	GAAGA	7 cut(s)	232, 383, 407, 838, 882, 898, 1060
MfeI	CAATTG	1 cut(s)	580
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	6 cut(s)	89, 240, 252, 863, 893, 1045
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	3 cut(s)	580, 809, 947
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	2 cut(s)	124, 519
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	6 cut(s)	106, 139, 258, 471, 686, 831
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	5 cut(s)	270, 467, 506, 687, 950
MslI	CAYNNNNRTG	2 cut(s)	146, 361
Msp20I	TGGCCA	1 cut(s)	179
MunI	CAATTG	1 cut(s)	580
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	7 cut(s)	14, 34, 70, 79, 133, 636, 996
NdeI	CATATG	2 cut(s)	337, 969
NdeII	GATC	5 cut(s)	217, 442, 805, 865, 1057
NlaIII	CATG	5 cut(s)	280, 517, 605, 638, 1004
NlaIV	GGNNCC	2 cut(s)	170, 385
NmeAIII	GCCGAG	2 cut(s)	112, 433
OliI	CACNNNNGTG	1 cut(s)	146
PciSI	GCTCTTC	2 cut(s)	245, 881
PfeI	GAWTC	1 cut(s)	568
PflMI	CCANNNNNTGG	1 cut(s)	1033
PkrI	GCNGC	9 cut(s)	7, 81, 126, 140, 214, 355, 451, 459, 819
PleI	GAGTC	2 cut(s)	124, 518
PpsI	GAGTC	2 cut(s)	124, 518
PsiI	TTATAA	1 cut(s)	552
Psp124BI	GAGCTC	2 cut(s)	240, 252
PspN4I	GGNNCC	2 cut(s)	170, 385
PspPI	GGNCC	2 cut(s)	223, 431
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	442
RsaI	GTAC	5 cut(s)	44, 385, 532, 728, 832
RsaNI	GTAC	5 cut(s)	43, 384, 531, 727, 831
RseI	CAYNNNNRTG	2 cut(s)	146, 361
SacI	GAGCTC	2 cut(s)	240, 252
SalI	GTCGAC	1 cut(s)	1022
SapI	GCTCTTC	2 cut(s)	245, 881
SaqAI	TTAA	5 cut(s)	270, 467, 506, 687, 950
SatI	GCNGC	9 cut(s)	6, 80, 125, 139, 213, 354, 450, 458, 818
Sau3AI	GATC	5 cut(s)	217, 442, 805, 865, 1057
Sau96I	GGNCC	2 cut(s)	223, 431
ScaI	AGTACT	1 cut(s)	832
SchI	GAGTC	2 cut(s)	124, 519
SduI	GDGCHC	6 cut(s)	89, 240, 252, 863, 893, 1045
SfaNI	GCATC	2 cut(s)	264, 745
SfcI	CTRYAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	2 cut(s)	146, 361
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	3 cut(s)	580, 809, 947
SsiI	CCGC	6 cut(s)	5, 26, 35, 95, 138, 213
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	3 cut(s)	792, 852, 941
SstI	GAGCTC	2 cut(s)	240, 252
TaaI	ACNGT	6 cut(s)	488, 648, 704, 717, 760, 788
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	5 cut(s)	246, 762, 868, 1023, 1060
TasI	AATT	3 cut(s)	580, 809, 947
TatI	WGTACW	2 cut(s)	726, 830
TauI	GCSGC	3 cut(s)	8, 141, 215
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	5 cut(s)	270, 467, 506, 687, 950
Tru9I	TTAA	5 cut(s)	270, 467, 506, 687, 950
TscAI	CASTG	5 cut(s)	148, 579, 707, 868, 898
TseI	GCWGC	6 cut(s)	79, 124, 353, 449, 457, 817
TspDTI	ATGAA	6 cut(s)	232, 590, 630, 687, 739, 913
TspGWI	ACGGA	1 cut(s)	1060
TspRI	CASTG	5 cut(s)	148, 579, 707, 868, 898
Van91I	CCANNNNNTGG	1 cut(s)	1033
XbaI	TCTAGA	1 cut(s)	851
XmiI	GTMKAC	1 cut(s)	1023
XspI	CTAG	3 cut(s)	792, 852, 941
ZrmI	AGTACT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.