Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Forward (+)

79991872 .. 79995125

Gene Structure 3254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG625800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCTTGTTGTTGGATCACAATGCATTGGGGAAGGCTCATATTTGTTTTCTATTTTTCTGTTCCAGGCAAGTGAGCAGAATACATATGCAGATATTGAAGCTGCATATAAGTGTCTTGAAGAAAGCTATGGTACCAAGCAGGAAGATATCATTCTCTATGGTCAATCTGTTGGAAGTGGCCCGACTTTGGATCTTGCTGCTCGGCTGCCTCAGTTAAGAGCTGTTGTTCTGCACAGTCCCATCCTATCTGGTTTAAGAGTCATGTATCCTGTAAAGCGTACATACTGGTTTGACATTTATAAGAATATTGATAAGATTCCACTGGTCAATTGTCCTGTTCTCATCATTCATGGAACTGCAGATGAAGTAGTTGACTGCTCTCATGGCAAGCAACTGTGGGAGTTATGTAAAGAGAAGTATGAACCACTATGGCTTAAAGGAGGCAACCACTGTGATATAGAACTGTATCCCGAGTACATCAGGCATCTCAAGAAGTTCATTTCAACTGTCGAGAAGTCTCCTTCCCAAAGATACAGTTCTAGGAGAAGCACAGATCAATTTGAGCAGCCTCGGAAGAGTACTGATGTTTACGAAGTTTCTAGAAAGAGCACTGATCGAAGAGATAAACCAAAGAAGAGCACTGATAGACCTGAGAAACTGAAAAACCAGTTCATTAGTGCTGATAAACTAGAAAAATTAAAAGTATCCTTTGACCATATGGACAGGTCTCGGAGAAGCGTGGACTGCCATGAGAAGTCCAGAAAAAGTGTCGACCACCAACTGGATAGAGCACGGAAGAGTGTGGATCGATTGGATAGAATACGGAGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

277

Amino Acids

32.07

Weight (kDa)

9.0

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
Acc65I	GGTACC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	781
AccI	GTMKAC	1 cut(s)	771
AclWI	GGATC	3 cut(s)	22, 198, 813
AfaI	GTAC	4 cut(s)	133, 280, 476, 580
AfiI	CCNNNNNNNGG	2 cut(s)	187, 781
AgsI	TTSAA	3 cut(s)	98, 119, 504
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	101, 126, 221
AluI	AGCT	3 cut(s)	101, 126, 221
Alw21I	GWGCWC	3 cut(s)	611, 641, 793
Alw26I	GTCTC	2 cut(s)	522, 732
AlwI	GGATC	3 cut(s)	22, 198, 813
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	4 cut(s)	101, 197, 205, 565
Asp718I	GGTACC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	131
Bbv12I	GWGCWC	3 cut(s)	611, 641, 793
BbvI	GCAGC	4 cut(s)	88, 184, 192, 577
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	65
BciVI	GTATCC	3 cut(s)	276, 477, 715
BcoDI	GTCTC	2 cut(s)	522, 732
BfaI	CTAG	3 cut(s)	540, 600, 689
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	3 cut(s)	276, 477, 715
BisI	GCNGC	4 cut(s)	102, 198, 206, 566
BlsI	GCNGC	4 cut(s)	103, 199, 207, 567
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	473
Bsa29I	ATCGAT	1 cut(s)	808
BsaI	GGTCTC	1 cut(s)	732
BsaJI	CCNNGG	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 781
Bse1I	ACTGG	4 cut(s)	290, 327, 667, 786
BseBI	CCWGG	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	808
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	187, 781
BseMII	CTCAG	2 cut(s)	224, 642
BseNI	ACTGG	4 cut(s)	290, 327, 667, 786
BseXI	GCAGC	4 cut(s)	88, 184, 192, 577
BsgI	GTGCAG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	180
BshNI	GGYRCC	1 cut(s)	131
BshVI	ATCGAT	1 cut(s)	808
BsiHKAI	GWGCWC	3 cut(s)	611, 641, 793
BsiHKCI	CYCGRG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	187, 781
BsmAI	GTCTC	2 cut(s)	522, 732
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	732
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	3 cut(s)	611, 641, 793
Bsp143I	GATC	5 cut(s)	14, 190, 553, 613, 805
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	2 cut(s)	223, 643
BspDI	ATCGAT	1 cut(s)	808
BspLI	GGNNCC	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	3 cut(s)	22, 198, 813
BspQI	GCTCTTC	1 cut(s)	629
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	732
BsrI	ACTGG	4 cut(s)	290, 327, 667, 786
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	5 cut(s)	14, 190, 553, 613, 805
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	6 cut(s)	236, 396, 452, 465, 508, 536
Bst6I	CTCTTC	4 cut(s)	569, 613, 629, 791
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	210, 651
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	5 cut(s)	17, 193, 556, 616, 808
BstMAI	GTCTC	2 cut(s)	522, 732
BstMBI	GATC	5 cut(s)	14, 190, 553, 613, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 744
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	4 cut(s)	88, 184, 192, 577
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	808
BsuI	GTATCC	3 cut(s)	276, 477, 715
BsuRI	GGCC	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	808
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	4 cut(s)	320, 448, 609, 639
Cac8I	GCNNGC	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	808
Csp6I	GTAC	4 cut(s)	132, 279, 475, 579
CviAII	CATG	4 cut(s)	262, 350, 383, 749
CviJI	RGCY	8 cut(s)	36, 101, 126, 180, 205, 221, 433, 568
CviKI_1	RGCY	8 cut(s)	36, 101, 126, 180, 205, 221, 433, 568
CviQI	GTAC	4 cut(s)	132, 279, 475, 579
DdeI	CTNAG	2 cut(s)	210, 651
DpnI	GATC	5 cut(s)	16, 192, 555, 615, 807
DpnII	GATC	5 cut(s)	14, 190, 553, 613, 805
Eam1104I	CTCTTC	4 cut(s)	569, 613, 629, 791
EarI	CTCTTC	4 cut(s)	569, 613, 629, 791
Eco31I	GGTCTC	1 cut(s)	732
Eco32I	GATATC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	63
EcoRV	GATATC	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	26
FaeI	CATG	4 cut(s)	265, 353, 386, 752
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	4 cut(s)	261, 349, 382, 748
FauNDI	CATATG	2 cut(s)	85, 717
FblI	GTMKAC	1 cut(s)	771
Fnu4HI	GCNGC	4 cut(s)	102, 198, 206, 566
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	102, 198, 206, 566
FspBI	CTAG	3 cut(s)	540, 600, 689
GluI	GCNGC	4 cut(s)	102, 198, 206, 566
HaeIII	GGCC	1 cut(s)	180
Hin1II	CATG	4 cut(s)	265, 353, 386, 752
HincII	GTYRAC	2 cut(s)	373, 772
HindII	GTYRAC	2 cut(s)	373, 772
HinfI	GANTC	2 cut(s)	258, 316
Hpy166II	GTNNAC	4 cut(s)	373, 589, 742, 772
Hpy188I	TCNGA	2 cut(s)	573, 732
Hpy188III	TCNNGA	6 cut(s)	116, 470, 490, 511, 600, 759
Hpy8I	GTNNAC	4 cut(s)	373, 589, 742, 772
HpyAV	CCTTC	2 cut(s)	26, 531
HpyCH4III	ACNGT	6 cut(s)	236, 396, 452, 465, 508, 536
HpyCH4V	TGCA	5 cut(s)	24, 89, 104, 232, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 744
HpyF3I	CTNAG	2 cut(s)	210, 651
Hsp92II	CATG	4 cut(s)	265, 353, 386, 752
KpnI	GGTACC	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	14, 190, 553, 613, 805
LguI	GCTCTTC	1 cut(s)	629
Lsp1109I	GCAGC	4 cut(s)	88, 184, 192, 577
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	3 cut(s)	540, 600, 689
MalI	GATC	5 cut(s)	16, 192, 555, 615, 807
MboI	GATC	5 cut(s)	14, 190, 553, 613, 805
MboII	GAAGA	6 cut(s)	131, 155, 586, 630, 646, 808
MfeI	CAATTG	1 cut(s)	328
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	3 cut(s)	611, 641, 793
MluCI	AATT	3 cut(s)	328, 557, 695
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	3 cut(s)	219, 434, 579
Mph1103I	ATGCAT	1 cut(s)	26
MseI	TTAA	4 cut(s)	215, 254, 435, 698
MslI	CAYNNNNRTG	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	384, 744
NdeI	CATATG	2 cut(s)	85, 717
NdeII	GATC	5 cut(s)	14, 190, 553, 613, 805
NlaIII	CATG	4 cut(s)	265, 353, 386, 752
NlaIV	GGNNCC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	781
PkrI	GCNGC	4 cut(s)	103, 199, 207, 567
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PsiI	TTATAA	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	4 cut(s)	133, 280, 476, 580
RsaNI	GTAC	4 cut(s)	132, 279, 475, 579
RseI	CAYNNNNRTG	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	770
SapI	GCTCTTC	1 cut(s)	629
SaqAI	TTAA	4 cut(s)	215, 254, 435, 698
SatI	GCNGC	4 cut(s)	102, 198, 206, 566
Sau3AI	GATC	5 cut(s)	14, 190, 553, 613, 805
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	3 cut(s)	611, 641, 793
SetI	ASST	5 cut(s)	103, 128, 223, 652, 728
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	3 cut(s)	328, 557, 695
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	3 cut(s)	540, 600, 689
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	6 cut(s)	236, 396, 452, 465, 508, 536
TaqI	TCGA	4 cut(s)	510, 616, 771, 808
TasI	AATT	3 cut(s)	328, 557, 695
TatI	WGTACW	2 cut(s)	474, 578
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	4 cut(s)	215, 254, 435, 698
Tru9I	TTAA	4 cut(s)	215, 254, 435, 698
TscAI	CASTG	4 cut(s)	327, 455, 616, 646
TseI	GCWGC	4 cut(s)	101, 197, 205, 565
TspDTI	ATGAA	5 cut(s)	338, 378, 435, 487, 661
TspGWI	ACGGA	1 cut(s)	808
TspRI	CASTG	4 cut(s)	327, 455, 616, 646
Van91I	CCANNNNNTGG	1 cut(s)	781
XbaI	TCTAGA	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	771
XspI	CTAG	3 cut(s)	540, 600, 689
ZrmI	AGTACT	1 cut(s)	580
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.