Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Reverse (-)

22624302 .. 22625278

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGTACGAGCTCTTCATCGAATTGAGCATCCACCTGCGCGTTAATCTCATGGGGTACGACTATTCGGGGTATGGGCAATCAACTGGAAAGGCAAGTGAGCAGAATACATATGCAGATATTGAAGCTGCATATAAGTGTCTTGAAGAAAGCTATGGTACCAAGCAGGAAGATATCATTCTCTATGGCCAATCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

66

Amino Acids

7.45

Weight (kDa)

4.35

Isoelectric Point (pI)

67.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	42
Acc65I	GGTACC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	184
AfaI	GTAC	3 cut(s)	5, 56, 157
AgsI	TTSAA	2 cut(s)	122, 143
AluBI	AGCT	3 cut(s)	10, 125, 150
AluI	AGCT	3 cut(s)	10, 125, 150
Alw21I	GWGCWC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	125
Asp718I	GGTACC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	12
BarI	GAAGNNNNNNTAC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	42
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	42
BspQI	GCTCTTC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	39
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	4, 55, 156
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	4 cut(s)	10, 125, 150, 186
CviKI_1	RGCY	4 cut(s)	10, 125, 150, 186
CviQI	GTAC	3 cut(s)	4, 55, 156
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoRV	GATATC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	1 cut(s)	52
FaiI	YATR	8 cut(s)	50, 72, 109, 111, 130, 132, 153, 183
FatI	CATG	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	126
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	113, 128
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	159
LguI	GCTCTTC	1 cut(s)	17
LpnPI	CCDG	3 cut(s)	47, 69, 149
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	36
MboII	GAAGA	3 cut(s)	4, 155, 179
MhlI	GDGCHC	1 cut(s)	12
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	186
Mox20I	TGGCCA	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	2 cut(s)	42, 196
MslI	CAYNNNNRTG	1 cut(s)	133
Msp20I	TGGCCA	1 cut(s)	186
MvnI	CGCG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	109
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	157
PaqCI	CACCTGC	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	157
RsaI	GTAC	3 cut(s)	5, 56, 157
RsaNI	GTAC	3 cut(s)	4, 55, 156
RseI	CAYNNNNRTG	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	42, 196
SatI	GCNGC	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	4 cut(s)	12, 36, 127, 152
SfaNI	GCATC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	133
Sse9I	AATT	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	12
TaqI	TCGA	1 cut(s)	18
TasI	AATT	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	42, 196
Tru9I	TTAA	2 cut(s)	42, 196
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.