Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Forward (+)

26327165 .. 26330549

Gene Structure 3385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G296100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGTGGGGTGACCTCGTCCATGGCGGCCAAGTTCGCCTTTTTCCCACCGAACCCACCATCCTACAAGCTCATCACAGACGACCACACTGGTCTCTTGCTTCTCAGCCCATTCCCCCACCGAGAAAACGTCGAGGTTCTCAAATTGCCGACTCGGCGTGGCACTGAGATAGTGGCCATCTACATTCGCCACCCCTTGGCCACTTCTACTCTGCTTTACTCTCATGGCAACGCCGCCGATCTGGGCCAGATGTACGAGCTGTTCATCGAATTGAGCATCCACTTGCGCGTCAATCTCATGGGGTATGATTATTCAGGGTATGGGCAATCATCTGGAAAGGCAAGTGAGCAGAATACATATGCAGATATTGAAGCTGCATATAAGTGTCTTGAAGAAAGCTATGGTACTAAGCAGGAAGATATCATTCTCTATGGCCAATCTGTTGGAAGTGGCCCCACATTGGATCTTGCTGCTCGGCTGCCTCAGTTAAGAGCTGTTGTCCTGCATAGTCCCATACTATCTGGTTTAAGGGTCATGTATCCTGTAAAGCGTACATACTGGTTTGACATTTATAAGAATATTGATAAAATTCCACTGGTCAATTGTCCTGTTCTCATCATTCATGGAACTGCGGACGAAGTAGTTGATTGCTCTCATGGGAAGCAACTGTGGGAACTATGTAAAGAGAAGTATGAACCACTATGGCTTAAAGGAGGGAACCACTGTGATTTAGAGCTGTATCCTGAGTATATCAGGCATCTCAAGAAGTTCATATCAACTGTTGAGAAGTCTCCTTCCCAAAGGTACAATTCTAGGAGAAGCACAGACCAATTTGAGCAGCCTCGGAAGAGTACTGATGTTTATGAAGTTTCAAGGAAGAGCACAGATCGAAGAGAGAAACCAAGGAAGAGCACTGATAGGCCTGAAAAGCTGAAAAATCAATTCATTAGTGCTGATAAACTAGAAAAATTAAGAGTATCTTTTGATCATATGGAAAGGTCTCGGAGAAGCGTGGACTGCCATGAAAAGTCCAGAAAAAGTATTGACCACCAACTGGACAGAGCACGGAAGAGTGTTGATCGGTTGGATAGAATACGAACTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

369

Amino Acids

42.28

Weight (kDa)

9.06

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AccB7I	CCANNNNNTGG	2 cut(s)	196, 1054
AccII	CGCG	1 cut(s)	288
AciI	CCGC	3 cut(s)	26, 234, 632
AclWI	GGATC	1 cut(s)	471
AcoI	YGGCCR	4 cut(s)	27, 174, 198, 433
AcsI	RAATTY	1 cut(s)	588
AfaI	GTAC	5 cut(s)	254, 406, 553, 806, 853
AfiI	CCNNNNNNNGG	3 cut(s)	196, 460, 1054
AgsI	TTSAA	3 cut(s)	371, 392, 873
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	7 cut(s)	70, 259, 374, 399, 494, 736, 931
AluI	AGCT	7 cut(s)	70, 259, 374, 399, 494, 736, 931
Alw21I	GWGCWC	3 cut(s)	884, 914, 1066
Alw26I	GTCTC	3 cut(s)	98, 795, 1005
AlwI	GGATC	1 cut(s)	471
AoxI	GGCC	7 cut(s)	27, 174, 198, 244, 433, 451, 920
ApeKI	GCWGC	4 cut(s)	374, 470, 478, 838
ApoI	RAATTY	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	244, 452
AsuHPI	GGTGA	1 cut(s)	22
BalI	TGGCCA	3 cut(s)	176, 200, 435
Bbv12I	GWGCWC	3 cut(s)	884, 914, 1066
BbvI	GCAGC	4 cut(s)	361, 457, 465, 850
BccI	CCATC	2 cut(s)	67, 185
BciVI	GTATCC	2 cut(s)	549, 750
BclI	TGATCA	1 cut(s)	985
BcoDI	GTCTC	3 cut(s)	98, 795, 1005
BfaI	CTAG	2 cut(s)	813, 962
BfuI	GTATCC	2 cut(s)	549, 750
BglI	GCCNNNNNGGC	1 cut(s)	154
BisI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 839
BlsI	GCNGC	6 cut(s)	28, 235, 376, 472, 480, 840
BmcAI	AGTACT	1 cut(s)	853
BmgT120I	GGNCC	2 cut(s)	244, 452
BmiI	GGNNCC	2 cut(s)	454, 719
BmsI	GCATC	2 cut(s)	285, 766
BpuEI	CTTGAG	1 cut(s)	746
BsaI	GGTCTC	2 cut(s)	98, 1005
BsaJI	CCNNGG	4 cut(s)	21, 195, 842, 902
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 460, 1054
Bse1I	ACTGG	5 cut(s)	94, 563, 600, 1059, 1105
BseDI	CCNNGG	4 cut(s)	21, 195, 842, 902
BseGI	GGATG	2 cut(s)	59, 276
BseLI	CCNNNNNNNGG	3 cut(s)	196, 460, 1054
BseMII	CTCAG	4 cut(s)	118, 156, 497, 735
BseNI	ACTGG	5 cut(s)	94, 563, 600, 1059, 1105
BseXI	GCAGC	4 cut(s)	361, 457, 465, 850
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	7 cut(s)	29, 176, 200, 246, 435, 453, 922
BsiHKAI	GWGCWC	3 cut(s)	884, 914, 1066
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	3 cut(s)	196, 460, 1054
BsmAI	GTCTC	3 cut(s)	98, 795, 1005
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	7 cut(s)	29, 176, 200, 246, 435, 453, 922
Bso31I	GGTCTC	2 cut(s)	98, 1005
Bsp1286I	GDGCHC	3 cut(s)	884, 914, 1066
Bsp143I	GATC	5 cut(s)	238, 463, 886, 985, 1078
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	26, 234, 632
BspANI	GGCC	7 cut(s)	29, 176, 200, 246, 435, 453, 922
BspCNI	CTCAG	4 cut(s)	117, 157, 496, 736
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	454, 719
BspPI	GGATC	1 cut(s)	471
BspQI	GCTCTTC	2 cut(s)	872, 902
BspTNI	GGTCTC	2 cut(s)	98, 1005
BsrI	ACTGG	5 cut(s)	94, 563, 600, 1059, 1105
BssECI	CCNNGG	4 cut(s)	21, 195, 842, 902
BssMI	GATC	5 cut(s)	238, 463, 886, 985, 1078
BssT1I	CCWWGG	3 cut(s)	21, 195, 902
Bst4CI	ACNGT	3 cut(s)	669, 725, 781
Bst6I	CTCTTC	5 cut(s)	842, 872, 886, 902, 1064
BstDEI	CTNAG	5 cut(s)	104, 165, 408, 483, 744
BstDSI	CCRYGG	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	59, 276
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	5 cut(s)	241, 466, 889, 988, 1081
BstMAI	GTCTC	3 cut(s)	98, 795, 1005
BstMBI	GATC	5 cut(s)	238, 463, 886, 985, 1078
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 154, 928, 1017
BstPI	GGTNACC	1 cut(s)	10
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	361, 457, 465, 850
BstX2I	RGATCY	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	463
BsuI	GTATCC	2 cut(s)	549, 750
BsuRI	GGCC	7 cut(s)	29, 176, 200, 246, 435, 453, 922
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	59, 276
BtsIMutI	CAGTG	5 cut(s)	87, 162, 593, 721, 912
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	244, 452
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	5 cut(s)	253, 405, 552, 805, 852
CviAII	CATG	7 cut(s)	22, 224, 298, 535, 623, 656, 1022
CviQI	GTAC	5 cut(s)	253, 405, 552, 805, 852
DdeI	CTNAG	5 cut(s)	104, 165, 408, 483, 744
DpnI	GATC	5 cut(s)	240, 465, 888, 987, 1080
DpnII	GATC	5 cut(s)	238, 463, 886, 985, 1078
EaeI	YGGCCR	4 cut(s)	27, 174, 198, 433
Eam1104I	CTCTTC	5 cut(s)	842, 872, 886, 902, 1064
EarI	CTCTTC	5 cut(s)	842, 872, 886, 902, 1064
Eco130I	CCWWGG	3 cut(s)	21, 195, 902
Eco147I	AGGCCT	1 cut(s)	922
Eco31I	GGTCTC	2 cut(s)	98, 1005
Eco32I	GATATC	1 cut(s)	421
Eco91I	GGTNACC	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	10
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	3 cut(s)	21, 195, 902
ErhI	CCWWGG	3 cut(s)	21, 195, 902
FaeI	CATG	7 cut(s)	25, 227, 301, 538, 626, 659, 1025
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 964, 996
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	7 cut(s)	21, 223, 297, 534, 622, 655, 1021
FauNDI	CATATG	2 cut(s)	358, 990
FbaI	TGATCA	1 cut(s)	985
Fnu4HI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 839
FokI	GGATG	2 cut(s)	46, 263
Fsp4HI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 839
FspBI	CTAG	2 cut(s)	813, 962
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 839
HaeIII	GGCC	7 cut(s)	29, 176, 200, 246, 435, 453, 922
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	7 cut(s)	25, 227, 301, 538, 626, 659, 1025
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	1015
Hpy188I	TCNGA	2 cut(s)	846, 1005
Hpy188III	TCNNGA	5 cut(s)	333, 389, 743, 763, 1032
Hpy8I	GTNNAC	1 cut(s)	1015
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	804
HpyCH4III	ACNGT	3 cut(s)	669, 725, 781
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	362, 377, 505
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 154, 928, 1017
HpyF3I	CTNAG	5 cut(s)	104, 165, 408, 483, 744
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	7 cut(s)	25, 227, 301, 538, 626, 659, 1025
HspAI	GCGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	985
Kzo9I	GATC	5 cut(s)	238, 463, 886, 985, 1078
LguI	GCTCTTC	2 cut(s)	872, 902
Lsp1109I	GCAGC	4 cut(s)	361, 457, 465, 850
LweI	GCATC	2 cut(s)	285, 766
MaeI	CTAG	2 cut(s)	813, 962
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	5 cut(s)	240, 465, 888, 987, 1080
MboI	GATC	5 cut(s)	238, 463, 886, 985, 1078
MboII	GAAGA	7 cut(s)	404, 428, 859, 889, 903, 919, 1081
MfeI	CAATTG	1 cut(s)	601
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	3 cut(s)	884, 914, 1066
MlsI	TGGCCA	3 cut(s)	176, 200, 435
MluCI	AATT	8 cut(s)	143, 269, 588, 601, 808, 830, 941, 968
MluNI	TGGCCA	3 cut(s)	176, 200, 435
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	2 cut(s)	424, 1065
MnlI	CCTC	5 cut(s)	25, 127, 492, 707, 852
Mox20I	TGGCCA	3 cut(s)	176, 200, 435
MscI	TGGCCA	3 cut(s)	176, 200, 435
MseI	TTAA	4 cut(s)	488, 527, 708, 971
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	3 cut(s)	176, 200, 435
MunI	CAATTG	1 cut(s)	601
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	4 cut(s)	35, 154, 928, 1017
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	2 cut(s)	358, 990
NdeII	GATC	5 cut(s)	238, 463, 886, 985, 1078
NlaIII	CATG	7 cut(s)	25, 227, 301, 538, 626, 659, 1025
NlaIV	GGNNCC	2 cut(s)	454, 719
NmeAIII	GCCGAG	2 cut(s)	133, 454
NmuCI	GTSAC	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	922
PciSI	GCTCTTC	2 cut(s)	872, 902
PflFI	GACNNNGTC	1 cut(s)	16
PflMI	CCANNNNNTGG	2 cut(s)	196, 1054
PkrI	GCNGC	6 cut(s)	28, 235, 376, 472, 480, 840
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PsiI	TTATAA	1 cut(s)	573
PspEI	GGTNACC	1 cut(s)	10
PspN4I	GGNNCC	2 cut(s)	454, 719
PspPI	GGNCC	2 cut(s)	244, 452
PsrI	GAACNNNNNNTAC	2 cut(s)	245, 277
PsuI	RGATCY	1 cut(s)	463
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	5 cut(s)	254, 406, 553, 806, 853
RsaNI	GTAC	5 cut(s)	253, 405, 552, 805, 852
RseI	CAYNNNNRTG	1 cut(s)	382
SapI	GCTCTTC	2 cut(s)	872, 902
SaqAI	TTAA	4 cut(s)	488, 527, 708, 971
SatI	GCNGC	6 cut(s)	27, 234, 375, 471, 479, 839
Sau3AI	GATC	5 cut(s)	238, 463, 886, 985, 1078
Sau96I	GGNCC	2 cut(s)	244, 452
ScaI	AGTACT	1 cut(s)	853
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	3 cut(s)	884, 914, 1066
SfaNI	GCATC	2 cut(s)	285, 766
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	8 cut(s)	143, 269, 588, 601, 808, 830, 941, 968
SseBI	AGGCCT	1 cut(s)	922
SsiI	CCGC	3 cut(s)	26, 234, 632
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	2 cut(s)	813, 962
StuI	AGGCCT	1 cut(s)	922
StyI	CCWWGG	3 cut(s)	21, 195, 902
TaaI	ACNGT	3 cut(s)	669, 725, 781
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	132, 267, 889
TasI	AATT	8 cut(s)	143, 269, 588, 601, 808, 830, 941, 968
TatI	WGTACW	1 cut(s)	851
TauI	GCSGC	2 cut(s)	29, 236
Tru1I	TTAA	4 cut(s)	488, 527, 708, 971
Tru9I	TTAA	4 cut(s)	488, 527, 708, 971
TscAI	CASTG	5 cut(s)	94, 169, 600, 728, 919
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	4 cut(s)	374, 470, 478, 838
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	7 cut(s)	253, 611, 708, 760, 879, 934, 1038
TspGWI	ACGGA	1 cut(s)	1081
TspRI	CASTG	5 cut(s)	94, 169, 600, 728, 919
Tth111I	GACNNNGTC	1 cut(s)	16
Van91I	CCANNNNNTGG	2 cut(s)	196, 1054
XapI	RAATTY	1 cut(s)	588
XspI	CTAG	2 cut(s)	813, 962
ZrmI	AGTACT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.