Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Forward (+)

28533041 .. 28533537

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1206800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGTGGGGTGACATCGTCCATGGTGGCTAAGTCCGCCTTTTTCACACCGAACCCACCTTCCTACAAGTTTATCACAGACGACCATACCGGCCTCCTGCTTCTCAGCCCCTTCCCTCACCGGGAAAATGTGGAGGTTCTGAAACTGTCGACCCTCCATGGCATTGAGGTTGTGGCCATCCACATTCACCACCCTTTGGCCATTTCCACACTGCTCTACTCACACGGCAACGCCGCCGATCTAGGCCATATGTACGAGCTCTTCATCGAATTGAGCATCCACCTGCACGTCAATCTCATGGGGTACGACTATTCGGGGTATGTGCAATCAACTGGAAAGGCAAGTAAGGAGAATACATATGCAGATATTGAAGCTGCATATAAGTGTCTTGAAAAATGCCATAATATCAAAGTTCTTTCACGTCCCCCAAGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

146

Amino Acids

16.09

Weight (kDa)

6.58

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	291
Acc36I	ACCTGC	1 cut(s)	291
AccB7I	CCANNNNNTGG	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	2 cut(s)	36, 234
AcoI	YGGCCR	2 cut(s)	174, 198
AfaI	GTAC	2 cut(s)	254, 305
AfiI	CCNNNNNNNGG	2 cut(s)	121, 196
AgsI	TTSAA	2 cut(s)	371, 392
AjiI	CACGTC	2 cut(s)	289, 422
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	259, 374
AluI	AGCT	2 cut(s)	259, 374
Alw21I	GWGCWC	1 cut(s)	261
AoxI	GGCC	4 cut(s)	91, 174, 198, 244
ApeKI	GCWGC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	22, 110, 179
BalI	TGGCCA	2 cut(s)	176, 200
BanII	GRGCYC	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	291
BisI	GCNGC	2 cut(s)	234, 375
BlsI	GCNGC	2 cut(s)	235, 376
Bme1390I	CCNGG	1 cut(s)	122
BmgBI	CACGTC	2 cut(s)	289, 422
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	21, 157, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 196
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	337
BseDI	CCNNGG	3 cut(s)	21, 157, 428
BseGI	GGATG	2 cut(s)	177, 276
BseLI	CCNNNNNNNGG	2 cut(s)	121, 196
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	269
BshFI	GGCC	4 cut(s)	93, 176, 200, 246
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	90, 121
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	2 cut(s)	121, 196
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	4 cut(s)	93, 176, 200, 246
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	238
Bsp19I	CCATGG	2 cut(s)	21, 157
BspACI	CCGC	2 cut(s)	36, 234
BspANI	GGCC	4 cut(s)	93, 176, 200, 246
BspCNI	CTCAG	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	291
BspQI	GCTCTTC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	21, 157, 428
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	3 cut(s)	21, 157, 428
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	30, 104
BstDSI	CCRYGG	2 cut(s)	21, 157
BstF5I	GGATG	2 cut(s)	177, 276
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	361
BsuRI	GGCC	4 cut(s)	93, 176, 200, 246
BtgI	CCRYGG	2 cut(s)	21, 157
BtrI	CACGTC	2 cut(s)	289, 422
BtsCI	GGATG	2 cut(s)	177, 276
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	209
BveI	ACCTGC	1 cut(s)	291
Cfr10I	RCCGGY	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	253, 304
CviAII	CATG	3 cut(s)	22, 158, 298
CviJI	RGCY	8 cut(s)	29, 93, 108, 176, 200, 246, 259, 374
CviKI_1	RGCY	8 cut(s)	29, 93, 108, 176, 200, 246, 259, 374
CviQI	GTAC	2 cut(s)	253, 304
DdeI	CTNAG	2 cut(s)	30, 104
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
EaeI	YGGCCR	2 cut(s)	174, 198
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	3 cut(s)	21, 157, 428
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoT14I	CCWWGG	3 cut(s)	21, 157, 428
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	3 cut(s)	21, 157, 428
FaeI	CATG	3 cut(s)	25, 161, 301
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	3 cut(s)	21, 157, 297
FauNDI	CATATG	2 cut(s)	249, 358
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	2 cut(s)	234, 375
FokI	GGATG	2 cut(s)	164, 263
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	234, 375
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	2 cut(s)	234, 375
HaeIII	GGCC	4 cut(s)	93, 176, 200, 246
HapII	CCGG	2 cut(s)	90, 121
Hin1II	CATG	3 cut(s)	25, 161, 301
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HpaII	CCGG	2 cut(s)	90, 121
HphI	GGTGA	3 cut(s)	22, 110, 179
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	1 cut(s)	389
Hpy8I	GTNNAC	1 cut(s)	150
HpyAV	CCTTC	2 cut(s)	69, 121
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	2 cut(s)	288, 421
HpyCH4V	TGCA	4 cut(s)	286, 325, 362, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	30, 104
HpySE526I	ACGT	2 cut(s)	288, 421
Hsp92II	CATG	3 cut(s)	25, 161, 301
Kzo9I	GATC	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	266
LpnPI	CCDG	5 cut(s)	103, 110, 134, 296, 318
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	2 cut(s)	288, 421
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	2 cut(s)	176, 200
MluCI	AATT	1 cut(s)	269
MluNI	TGGCCA	2 cut(s)	176, 200
MnlI	CCTC	5 cut(s)	104, 126, 127, 160, 164
Mox20I	TGGCCA	2 cut(s)	176, 200
MscI	TGGCCA	2 cut(s)	176, 200
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	2 cut(s)	176, 200
MspI	CCGG	2 cut(s)	90, 121
MspR9I	CCNGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	2 cut(s)	21, 157
NdeI	CATATG	2 cut(s)	249, 358
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	25, 161, 301
NmuCI	GTSAC	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	266
PflFI	GACNNNGTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	235, 376
Psp124BI	GAGCTC	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	2 cut(s)	254, 305
RsaNI	GTAC	2 cut(s)	253, 304
RseI	CAYNNNNRTG	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	261
SalI	GTCGAC	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	266
SatI	GCNGC	2 cut(s)	234, 375
Sau3AI	GATC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	8 cut(s)	61, 138, 171, 261, 285, 291, 376, 424
SfaNI	GCATC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	382
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	2 cut(s)	36, 234
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	3 cut(s)	21, 157, 428
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	2 cut(s)	291, 424
TaqI	TCGA	2 cut(s)	149, 267
TasI	AATT	1 cut(s)	269
TauI	GCSGC	1 cut(s)	236
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	216
Tth111I	GACNNNGTC	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	149
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.