Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006460

Physical Location & Seq

Genomic Coordinates Forward (+)

81151278 .. 81154195

Gene Structure 2918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G053390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGTGGCGTGACGTCATCCATGGCGGCCAAGTTCGCCTTTTTCCCGCCGAACCCGCCGTCGTACAAGCTCATCACCGACGAGCTGACGGGGCTGTTGCTGCTGAGCCCATTTCCGCACAGGGAAAACGTGGAGGTTCTGAAGCTGCCGACTCGGCGCGGCACTGAGGTGGTGGCTATTTACATTAGGCACCCTTTGGCCACTTCTACCCTGCTTTACTCTCACGGCAACGCCGCCGATCTGGGCCAGATGTATGAGCTCTTCATCGAGCTCAGCATCCATTTGAGGGTTAATCTCATGGGGTATGACTATTCAGGGTATGGGCAATCATCTGGAAAGGCAAGTGAGCAGAATACATATGCAGATATTGAAGCTGCATATAAGTGTCTTGAAGAAAGCTATGGTACCAAGCAGGAAGATATCATTCTCTATGGTCAATCTGTTGGAAGTGGCCCAACTTTGGATCTTGCTGCTCGGCTGCCTCAGTTAAGAGCTGTTGTTCTGCACAGTCCCATCCTATCTGGTTTAAGAGTCATGTATCCTGTAAAGCGTACATACTGGTTTGACATTTATAAGAATATTGATAAGATTCCACTGGTCAATTGTCCTGTTCTCATCATTCATGGAACTGCAGATGAAGTAGTTGACTGCTCTCATGGCAAGCAACTGTGGGAGTTATGTAAAGAGAAGTATGAACCACTATGGCTTAAAGGAGGCAACCACTGTGATATAGAACTGTATCCCGAGTACATCAGGCATCTCAAGAAGTTCATTTCAACTGTCGAGAAGTCTCCTTCCCAAAGATACAGTTCTAGGAGAAGCACAGATCAATTTGAGCAGCCTCGGAAGAGTACTGATGTTTACGAAGTTTCTAGAAAGAGCACTGATCGAAGAGATAAACCAAAGAAGAGCACTGATAGACCTGAGAAACTGAAAAACCAGTTCATTAGTGCTGATAAACTAGAAAAATTAAAAGTATCCTTTGACCATATGGACAGGTCTCGGAGAAGCGTGGACTGCCATGAGAAGTCCAGAAAAAGTGTCGACCACCAACTGGATAGAGCACGGAAGAGTGTGGATCGATTGGATAGAATACGGAGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

368

Amino Acids

42.12

Weight (kDa)

9.05

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	71 - 175	3.7e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	71 - 171	1.3e-06	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01690 AT5G14390
fragaria_vesca	FvH4_6g52100 FvH4_6g52100 FvH4_6g52100 FvH4_6g52100
malus_domestica	MD02G1141500.v1.1 MD07G1206800.v1.1 MD09G1020200.v1.1 MD17G1020800.v1.1
prunus_persica	Prupe.3G296100_v2.0.a1
pyrus_communis	pycom05g19740 pycom111g01690 pycom17g01740 pycom17g20620
rosa_chinensis	RchiOBHm_Chr2g0173611
rosa_laevigata	RLG00000022205
rosa_multiflora	Rmu_sc0002538.1_g000017 Rmu_sc0040129.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078750
rosa_rugosa	Rorug02G0571600
rosa_samantha	Rh2AG650500 Rh2BG660900 Rh2CG625800 Rh2DG676200
rosa_wichuraiana	Rw2G053390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AatII	GACGTC	1 cut(s)	17
Acc65I	GGTACC	1 cut(s)	404
AccB1I	GGYRCC	2 cut(s)	189, 404
AccB7I	CCANNNNNTGG	1 cut(s)	1054
AccI	GTMKAC	1 cut(s)	1044
AccII	CGCG	1 cut(s)	159
AciI	CCGC	6 cut(s)	26, 47, 56, 116, 159, 234
AclWI	GGATC	2 cut(s)	471, 1086
AcoI	YGGCCR	2 cut(s)	27, 198
AcuI	CTGAAG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	5 cut(s)	65, 406, 553, 749, 853
AfiI	CCNNNNNNNGG	3 cut(s)	286, 460, 1054
AgsI	TTSAA	3 cut(s)	371, 392, 777
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	8 cut(s)	70, 85, 145, 259, 271, 374, 399, 494
AluI	AGCT	8 cut(s)	70, 85, 145, 259, 271, 374, 399, 494
Alw21I	GWGCWC	5 cut(s)	261, 273, 884, 914, 1066
Alw26I	GTCTC	2 cut(s)	795, 1005
AlwI	GGATC	2 cut(s)	471, 1086
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	4 cut(s)	27, 198, 244, 451
ApeKI	GCWGC	6 cut(s)	100, 145, 374, 470, 478, 838
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
Asp718I	GGTACC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	244, 452
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	189, 404
BanII	GRGCYC	3 cut(s)	110, 261, 273
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
Bbv12I	GWGCWC	5 cut(s)	261, 273, 884, 914, 1066
BbvI	GCAGC	6 cut(s)	87, 132, 361, 457, 465, 850
BccI	CCATC	1 cut(s)	521
BceAI	ACGGC	2 cut(s)	43, 241
BciVI	GTATCC	3 cut(s)	549, 750, 988
BcoDI	GTCTC	2 cut(s)	795, 1005
BfaI	CTAG	3 cut(s)	813, 873, 962
BfmI	CTRYAG	1 cut(s)	630
BfuI	GTATCC	3 cut(s)	549, 750, 988
BglI	GCCNNNNNGGC	1 cut(s)	154
BisI	GCNGC	9 cut(s)	27, 101, 146, 160, 234, 375, 471, 479, 839
BlpI	GCTNAGC	2 cut(s)	104, 272
BlsI	GCNGC	9 cut(s)	28, 102, 147, 161, 235, 376, 472, 480, 840
BmcAI	AGTACT	1 cut(s)	853
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	244, 452
BmiI	GGNNCC	2 cut(s)	191, 406
BmsI	GCATC	2 cut(s)	285, 766
Bpu1102I	GCTNAGC	2 cut(s)	104, 272
BpuEI	CTTGAG	1 cut(s)	746
Bsa29I	ATCGAT	1 cut(s)	1081
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	1005
BsaJI	CCNNGG	2 cut(s)	21, 842
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 460, 1054
Bse1I	ACTGG	4 cut(s)	563, 600, 940, 1059
BseCI	ATCGAT	1 cut(s)	1081
BseDI	CCNNGG	2 cut(s)	21, 842
BseGI	GGATG	3 cut(s)	17, 276, 513
BseLI	CCNNNNNNNGG	3 cut(s)	286, 460, 1054
BseMII	CTCAG	5 cut(s)	95, 156, 286, 497, 915
BseNI	ACTGG	4 cut(s)	563, 600, 940, 1059
BseXI	GCAGC	6 cut(s)	87, 132, 361, 457, 465, 850
BsgI	GTGCAG	1 cut(s)	488
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	4 cut(s)	29, 200, 246, 453
BshNI	GGYRCC	2 cut(s)	189, 404
BshVI	ATCGAT	1 cut(s)	1081
BsiHKAI	GWGCWC	5 cut(s)	261, 273, 884, 914, 1066
BsiHKCI	CYCGRG	1 cut(s)	743
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	3 cut(s)	286, 460, 1054
BsmAI	GTCTC	2 cut(s)	795, 1005
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	4 cut(s)	29, 200, 246, 453
Bso31I	GGTCTC	1 cut(s)	1005
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	6 cut(s)	110, 261, 273, 884, 914, 1066
Bsp143I	GATC	5 cut(s)	238, 463, 826, 886, 1078
Bsp1720I	GCTNAGC	2 cut(s)	104, 272
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	6 cut(s)	26, 47, 56, 116, 159, 234
BspANI	GGCC	4 cut(s)	29, 200, 246, 453
BspCNI	CTCAG	5 cut(s)	96, 157, 285, 496, 916
BspDI	ATCGAT	1 cut(s)	1081
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	191, 406
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	2 cut(s)	471, 1086
BspQI	GCTCTTC	2 cut(s)	266, 902
BspT107I	GGYRCC	2 cut(s)	189, 404
BspTNI	GGTCTC	1 cut(s)	1005
BsrI	ACTGG	4 cut(s)	563, 600, 940, 1059
BssECI	CCNNGG	2 cut(s)	21, 842
BssMI	GATC	5 cut(s)	238, 463, 826, 886, 1078
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	6 cut(s)	509, 669, 725, 738, 781, 809
Bst6I	CTCTTC	5 cut(s)	266, 842, 886, 902, 1064
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	662
BstDEI	CTNAG	5 cut(s)	104, 165, 272, 483, 924
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	17, 276, 513
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	5 cut(s)	241, 466, 829, 889, 1081
BstMAI	GTCTC	2 cut(s)	795, 1005
BstMBI	GATC	5 cut(s)	238, 463, 826, 886, 1078
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 55, 91, 100, 154, 657, 1017
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	6 cut(s)	87, 132, 361, 457, 465, 850
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
Bsu15I	ATCGAT	1 cut(s)	1081
BsuI	GTATCC	3 cut(s)	549, 750, 988
BsuRI	GGCC	4 cut(s)	29, 200, 246, 453
BsuTUI	ATCGAT	1 cut(s)	1081
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	17, 276, 513
BtsIMutI	CAGTG	5 cut(s)	162, 593, 721, 882, 912
Cac8I	GCNNGC	1 cut(s)	662
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	244, 452
ClaI	ATCGAT	1 cut(s)	1081
Csp6I	GTAC	5 cut(s)	64, 405, 552, 748, 852
CviAII	CATG	6 cut(s)	22, 298, 535, 623, 656, 1022
CviQI	GTAC	5 cut(s)	64, 405, 552, 748, 852
DdeI	CTNAG	5 cut(s)	104, 165, 272, 483, 924
DpnI	GATC	5 cut(s)	240, 465, 828, 888, 1080
DpnII	GATC	5 cut(s)	238, 463, 826, 886, 1078
EaeI	YGGCCR	2 cut(s)	27, 198
Eam1104I	CTCTTC	5 cut(s)	266, 842, 886, 902, 1064
EarI	CTCTTC	5 cut(s)	266, 842, 886, 902, 1064
Ecl136II	GAGCTC	2 cut(s)	259, 271
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	3 cut(s)	110, 261, 273
Eco31I	GGTCTC	1 cut(s)	1005
Eco32I	GATATC	1 cut(s)	421
Eco53kI	GAGCTC	2 cut(s)	259, 271
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	743
EcoICRI	GAGCTC	2 cut(s)	259, 271
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	3 cut(s)	110, 261, 273
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	6 cut(s)	25, 301, 538, 626, 659, 1025
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	6 cut(s)	21, 297, 534, 622, 655, 1021
FauI	CCCGC	2 cut(s)	54, 63
FauNDI	CATATG	2 cut(s)	358, 990
FblI	GTMKAC	1 cut(s)	1044
Fnu4HI	GCNGC	9 cut(s)	27, 101, 146, 160, 234, 375, 471, 479, 839
FokI	GGATG	3 cut(s)	4, 263, 500
FriOI	GRGCYC	3 cut(s)	110, 261, 273
Fsp4HI	GCNGC	9 cut(s)	27, 101, 146, 160, 234, 375, 471, 479, 839
FspBI	CTAG	3 cut(s)	813, 873, 962
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	9 cut(s)	27, 101, 146, 160, 234, 375, 471, 479, 839
HaeIII	GGCC	4 cut(s)	29, 200, 246, 453
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	6 cut(s)	25, 301, 538, 626, 659, 1025
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	2 cut(s)	646, 1045
HindII	GTYRAC	2 cut(s)	646, 1045
HinfI	GANTC	3 cut(s)	151, 531, 589
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	4 cut(s)	646, 862, 1015, 1045
Hpy188I	TCNGA	3 cut(s)	141, 846, 1005
Hpy188III	TCNNGA	7 cut(s)	333, 389, 743, 763, 784, 873, 1032
Hpy8I	GTNNAC	4 cut(s)	646, 862, 1015, 1045
Hpy99I	CGWCG	2 cut(s)	64, 83
HpyAV	CCTTC	1 cut(s)	804
HpyCH4III	ACNGT	6 cut(s)	509, 669, 725, 738, 781, 809
HpyCH4IV	ACGT	2 cut(s)	14, 129
HpyCH4V	TGCA	4 cut(s)	362, 377, 505, 632
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 55, 91, 100, 154, 657, 1017
HpyF3I	CTNAG	5 cut(s)	104, 165, 272, 483, 924
HpySE526I	ACGT	2 cut(s)	14, 129
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	6 cut(s)	25, 301, 538, 626, 659, 1025
HspAI	GCGC	1 cut(s)	157
KpnI	GGTACC	1 cut(s)	408
Kzo9I	GATC	5 cut(s)	238, 463, 826, 886, 1078
LguI	GCTCTTC	2 cut(s)	266, 902
Lsp1109I	GCAGC	6 cut(s)	87, 132, 361, 457, 465, 850
LweI	GCATC	2 cut(s)	285, 766
MaeI	CTAG	3 cut(s)	813, 873, 962
MaeII	ACGT	2 cut(s)	14, 129
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	5 cut(s)	240, 465, 828, 888, 1080
MboI	GATC	5 cut(s)	238, 463, 826, 886, 1078
MboII	GAAGA	7 cut(s)	253, 404, 428, 859, 903, 919, 1081
MfeI	CAATTG	1 cut(s)	601
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	6 cut(s)	110, 261, 273, 884, 914, 1066
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	3 cut(s)	601, 830, 968
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	145, 540
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	6 cut(s)	127, 160, 279, 492, 707, 852
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	5 cut(s)	291, 488, 527, 708, 971
MslI	CAYNNNNRTG	2 cut(s)	167, 382
Msp20I	TGGCCA	1 cut(s)	200
MunI	CAATTG	1 cut(s)	601
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	7 cut(s)	35, 55, 91, 100, 154, 657, 1017
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	2 cut(s)	358, 990
NdeII	GATC	5 cut(s)	238, 463, 826, 886, 1078
NlaIII	CATG	6 cut(s)	25, 301, 538, 626, 659, 1025
NlaIV	GGNNCC	2 cut(s)	191, 406
NmeAIII	GCCGAG	2 cut(s)	133, 454
NmuCI	GTSAC	1 cut(s)	10
OliI	CACNNNNGTG	1 cut(s)	167
PciSI	GCTCTTC	2 cut(s)	266, 902
PfeI	GAWTC	1 cut(s)	589
PflMI	CCANNNNNTGG	1 cut(s)	1054
PkrI	GCNGC	9 cut(s)	28, 102, 147, 161, 235, 376, 472, 480, 840
PleI	GAGTC	2 cut(s)	145, 539
PpsI	GAGTC	2 cut(s)	145, 539
PsiI	TTATAA	1 cut(s)	573
Psp124BI	GAGCTC	2 cut(s)	261, 273
PspN4I	GGNNCC	2 cut(s)	191, 406
PspPI	GGNCC	2 cut(s)	244, 452
PstI	CTGCAG	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	5 cut(s)	65, 406, 553, 749, 853
RsaNI	GTAC	5 cut(s)	64, 405, 552, 748, 852
RseI	CAYNNNNRTG	2 cut(s)	167, 382
SacI	GAGCTC	2 cut(s)	261, 273
SalI	GTCGAC	1 cut(s)	1043
SapI	GCTCTTC	2 cut(s)	266, 902
SaqAI	TTAA	5 cut(s)	291, 488, 527, 708, 971
SatI	GCNGC	9 cut(s)	27, 101, 146, 160, 234, 375, 471, 479, 839
Sau3AI	GATC	5 cut(s)	238, 463, 826, 886, 1078
Sau96I	GGNCC	2 cut(s)	244, 452
ScaI	AGTACT	1 cut(s)	853
SchI	GAGTC	2 cut(s)	145, 540
SduI	GDGCHC	6 cut(s)	110, 261, 273, 884, 914, 1066
SfaNI	GCATC	2 cut(s)	285, 766
SfcI	CTRYAG	1 cut(s)	630
SmiMI	CAYNNNNRTG	2 cut(s)	167, 382
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	3 cut(s)	601, 830, 968
SsiI	CCGC	6 cut(s)	26, 47, 56, 116, 159, 234
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	3 cut(s)	813, 873, 962
SstI	GAGCTC	2 cut(s)	261, 273
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	6 cut(s)	509, 669, 725, 738, 781, 809
TaiI	ACGT	2 cut(s)	17, 132
TaqI	TCGA	5 cut(s)	267, 783, 889, 1044, 1081
TasI	AATT	3 cut(s)	601, 830, 968
TatI	WGTACW	2 cut(s)	747, 851
TauI	GCSGC	3 cut(s)	29, 162, 236
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	5 cut(s)	291, 488, 527, 708, 971
Tru9I	TTAA	5 cut(s)	291, 488, 527, 708, 971
TscAI	CASTG	5 cut(s)	169, 600, 728, 889, 919
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	6 cut(s)	100, 145, 374, 470, 478, 838
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	6 cut(s)	253, 611, 651, 708, 760, 934
TspGWI	ACGGA	1 cut(s)	1081
TspRI	CASTG	5 cut(s)	169, 600, 728, 889, 919
Van91I	CCANNNNNTGG	1 cut(s)	1054
XbaI	TCTAGA	1 cut(s)	872
XmiI	GTMKAC	1 cut(s)	1044
XspI	CTAG	3 cut(s)	813, 873, 962
ZraI	GACGTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.