AT3G01710

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001269
Physical Location & Seq
Reverse (-)
259639 .. 261883
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01710.2

Sequence Viewer

Length: 1176 bp
ATGGGAGAATCTGCTTGTCTCATGCAGCCATTCTCTTATGCAGCTCCACAGGGAGATTCTCTTGGTGCTTTAGGACAGTCTGTGTCCTTCGGAAGATTCATGTCGGAGAAACTTGACTGGGAGAAATGGTCTGCTTTCTCCACACAGAACCCTTACGTGGCTGAGGCAGAGAGATACTCTAAGCCCGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCTCACTACAAGAAAGTCGCTGCTGCTAGAAAAGCTGCTGCTGAAGAGGCACTCTTGCTTCAGCAGCAAATCCCTAAACCCCAACCAGAGAAGTCTCCAGTTCAAGAAGAAGATATCAATGAAGGAGAAAAGAAAGATTGGATGGTCTCAAAACCGGATCTTGAGATTCCAAGAGGATCTTTAGATGTTTCTGCTCAATTGAAATTACTTGCAGAGAAAGAAGGCCGATTTAGTAATAGACAATCTGATGAGAAAGAGAACTGTGGCATGGCTGAGTCAGAGATCAATGGCCGCACAGCTGAAGAACAAGTAGATGAGGAGAAACCTATACTAAAGTCTGTGAAGAAGAAATCCAAAGATTCACAACCAAAGAGTAGTACTAAACCAAGAGTCTCTAAGTACAATTCATCGGAGAGGACTCCAAGTAAAAAGTCTAATAACAAGAGCAGCTCGTACACTTTCACGCCTGCAAAAGAGTTCAATAGATTGGTGTCCATCATAAGGAAGATTGATGGGTCAAGAGCTTCTTCTAAACCAACCAAAGACTGCAAAACTCCTCTCCGGACACCATCAAACAAGGTGTCTGCAAAGGGAATGGTTGAAGACTCCTTGTCCACACCTTTATCGAGTAACACAAGTAAGTGCAGAGGGAAGATAGCTCCTAATTCTTCTGCCAAGACAGGTCGAGGAAGATGGAATTTCCTCCCTGCGGAGACACCGAGCTGTTTTACACCGTTTGGCTTAAGAACAGAGGAGAGAGCAGAGAGAAGAAAAAAGAAGCTAGAGGGGAAATTCAAGGAAATGGAGACACAGAACCAGAAGGCGGAGGAGAGGAGTGTGGAGAAGGAAGAGAGTAAACTAAGGCAAAGGCTATGCTTCAAAGCGAAGCCACTTCCAAATTTCTACAAACAGAGACCAAAATCAACAGACCAAACTAAGAAAGCTCTGTTACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2

Protein Analysis

391

Amino Acids

43.91

Weight (kDa)

9.64

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2 PF06886 316 - 380 1.2e-10 Targeting protein for Xklp2 (TPX2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 780
AciI CCGC 3 cut(s) 511, 929, 1043
AclWI GGATC 3 cut(s) 196, 384, 403
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 3 cut(s) 916, 1010, 1117
AcuI CTGAAG 3 cut(s) 263, 282, 540
AfaI GTAC 3 cut(s) 598, 620, 674
AfiI CCNNNNNNNGG 4 cut(s) 157, 720, 928, 1042
AflII CTTAAG 1 cut(s) 961
AgsI TTSAA 7 cut(s) 218, 323, 421, 700, 821, 1015, 1099
AhdI GACNNNNNGTC 1 cut(s) 829
Alw26I GTCTC 7 cut(s) 23, 318, 370, 616, 926, 1019, 1126
AlwI GGATC 3 cut(s) 196, 384, 403
Aor13HI TCCGGA 1 cut(s) 780
AoxI GGCC 2 cut(s) 442, 508
ApeKI GCWGC 8 cut(s) 25, 41, 239, 242, 254, 257, 283, 666
ApoI RAATTY 3 cut(s) 916, 1010, 1117
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
Asp700I GAANNNNTTC 1 cut(s) 209
AsuC2I CCSGG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 828
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 8 cut(s) 37, 53, 226, 229, 241, 244, 295, 678
BccI CCATC 5 cut(s) 355, 722, 725, 796, 906
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 7 cut(s) 23, 318, 370, 616, 926, 1019, 1126
BfaI CTAG 2 cut(s) 246, 1001
BfrI CTTAAG 1 cut(s) 961
BisI GCNGC 9 cut(s) 26, 42, 240, 243, 255, 258, 284, 511, 667
BlsI GCNGC 9 cut(s) 27, 43, 241, 244, 256, 259, 285, 512, 668
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 1 cut(s) 186
BmeRI GACNNNNNGTC 1 cut(s) 829
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 127
BmuI ACTGGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 828
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 186
BsaAI YACGTR 1 cut(s) 157
BsaI GGTCTC 2 cut(s) 370, 1126
BsaWI WCCGGW 2 cut(s) 373, 780
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 720, 928, 1042
Bse1I ACTGG 2 cut(s) 122, 317
BseAI TCCGGA 1 cut(s) 780
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 4 cut(s) 157, 720, 928, 1042
BseMII CTCAG 3 cut(s) 153, 212, 483
BseNI ACTGG 2 cut(s) 122, 317
BseRI GAGGAG 5 cut(s) 551, 765, 986, 1061, 1066
BseXI GCAGC 8 cut(s) 37, 53, 226, 229, 241, 244, 295, 678
BsgI GTGCAG 1 cut(s) 883
BshFI GGCC 2 cut(s) 444, 510
BsiSI CCGG 3 cut(s) 186, 374, 781
BslI CCNNNNNNNGG 4 cut(s) 157, 720, 928, 1042
BsmAI GTCTC 7 cut(s) 23, 318, 370, 616, 926, 1019, 1126
BsnI GGCC 2 cut(s) 444, 510
Bso31I GGTCTC 2 cut(s) 370, 1126
Bsp13I TCCGGA 1 cut(s) 780
Bsp143I GATC 4 cut(s) 188, 376, 395, 501
BspACI CCGC 3 cut(s) 511, 929, 1043
BspANI GGCC 2 cut(s) 444, 510
BspCNI CTCAG 3 cut(s) 154, 211, 484
BspEI TCCGGA 1 cut(s) 780
BspPI GGATC 3 cut(s) 196, 384, 403
BspTI CTTAAG 1 cut(s) 961
BspTNI GGTCTC 2 cut(s) 370, 1126
BsrI ACTGG 2 cut(s) 122, 317
BssMI GATC 4 cut(s) 188, 376, 395, 501
Bst4CI ACNGT 4 cut(s) 78, 482, 954, 1173
Bst6I CTCTTC 2 cut(s) 258, 1062
BstAFI CTTAAG 1 cut(s) 961
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 7 cut(s) 162, 180, 198, 492, 615, 1079, 1155
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 4 cut(s) 191, 379, 398, 504
BstMAI GTCTC 7 cut(s) 23, 318, 370, 616, 926, 1019, 1126
BstMBI GATC 4 cut(s) 188, 376, 395, 501
BstMWI GCNNNNNNNGC 3 cut(s) 251, 266, 283
BstSCI CCNGG 1 cut(s) 184
BstV1I GCAGC 8 cut(s) 37, 53, 226, 229, 241, 244, 295, 678
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 3 cut(s) 188, 376, 395
BstYI RGATCY 3 cut(s) 188, 376, 395
BsuRI GGCC 2 cut(s) 444, 510
BtsCI GGATG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 687
Csp6I GTAC 3 cut(s) 597, 619, 673
CviAII CATG 3 cut(s) 22, 100, 487
CviQI GTAC 3 cut(s) 597, 619, 673
DdeI CTNAG 7 cut(s) 162, 180, 198, 492, 615, 1079, 1155
DpnI GATC 4 cut(s) 190, 378, 397, 503
DpnII GATC 4 cut(s) 188, 376, 395, 501
DriI GACNNNNNGTC 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 508
Eam1104I CTCTTC 2 cut(s) 258, 1062
Eam1105I GACNNNNNGTC 1 cut(s) 829
EarI CTCTTC 2 cut(s) 258, 1062
EciI GGCGGA 1 cut(s) 1058
Eco31I GGTCTC 2 cut(s) 370, 1126
Eco32I GATATC 1 cut(s) 334
Eco57I CTGAAG 3 cut(s) 263, 282, 540
EcoRV GATATC 1 cut(s) 334
FaeI CATG 3 cut(s) 25, 103, 490
FaiI YATR 7 cut(s) 23, 39, 101, 488, 548, 719, 1093
FalI AAGNNNNNCTT 4 cut(s) 382, 414, 730, 762
FatI CATG 3 cut(s) 21, 99, 486
Fnu4HI GCNGC 9 cut(s) 26, 42, 240, 243, 255, 258, 284, 511, 667
FokI GGATG 1 cut(s) 373
Fsp4HI GCNGC 9 cut(s) 26, 42, 240, 243, 255, 258, 284, 511, 667
FspBI CTAG 2 cut(s) 246, 1001
GluI GCNGC 9 cut(s) 26, 42, 240, 243, 255, 258, 284, 511, 667
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 2 cut(s) 444, 510
HapII CCGG 3 cut(s) 186, 374, 781
Hin1II CATG 3 cut(s) 25, 103, 490
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 9 cut(s) 8, 56, 96, 385, 494, 578, 609, 637, 824
HpaII CCGG 3 cut(s) 186, 374, 781
Hpy166II GTNNAC 3 cut(s) 675, 834, 1076
Hpy188I TCNGA 6 cut(s) 92, 106, 201, 466, 499, 631
Hpy188III TCNNGA 4 cut(s) 323, 380, 738, 781
Hpy8I GTNNAC 3 cut(s) 675, 834, 1076
HpyAV CCTTC 5 cut(s) 97, 335, 434, 1033, 1057
HpyCH4III ACNGT 4 cut(s) 78, 482, 954, 1173
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 7 cut(s) 25, 41, 431, 689, 768, 806, 864
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 266, 283
HpyF3I CTNAG 7 cut(s) 162, 180, 198, 492, 615, 1079, 1155
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 3 cut(s) 25, 103, 490
Kpn2I TCCGGA 1 cut(s) 780
Kzo9I GATC 4 cut(s) 188, 376, 395, 501
LmnI GCTCC 2 cut(s) 49, 883
Lsp1109I GCAGC 8 cut(s) 37, 53, 226, 229, 241, 244, 295, 678
MaeI CTAG 2 cut(s) 246, 1001
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 848, 1167
MalI GATC 4 cut(s) 190, 378, 397, 503
MboI GATC 4 cut(s) 188, 376, 395, 501
MfeI CAATTG 1 cut(s) 416
MflI RGATCY 3 cut(s) 188, 376, 395
MluCI AATT 7 cut(s) 416, 422, 622, 883, 916, 1010, 1117
MlyI GAGTC 4 cut(s) 503, 618, 631, 818
MmeI TCCRAC 1 cut(s) 84
MroI TCCGGA 1 cut(s) 780
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 1 cut(s) 962
MspA1I CMGCKG 1 cut(s) 518
MspCI CTTAAG 1 cut(s) 961
MspI CCGG 3 cut(s) 186, 374, 781
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 416
MwoI GCNNNNNNNGC 3 cut(s) 251, 266, 283
NciI CCSGG 1 cut(s) 186
NdeII GATC 4 cut(s) 188, 376, 395, 501
NlaIII CATG 3 cut(s) 25, 103, 490
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 5 cut(s) 8, 56, 96, 385, 578
PkrI GCNGC 9 cut(s) 27, 43, 241, 244, 256, 259, 285, 512, 668
PleI GAGTC 4 cut(s) 502, 617, 631, 818
PpsI GAGTC 4 cut(s) 502, 617, 631, 818
Ppu21I YACGTR 1 cut(s) 157
PsuI RGATCY 3 cut(s) 188, 376, 395
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 3 cut(s) 598, 620, 674
RsaNI GTAC 3 cut(s) 597, 619, 673
SaqAI TTAA 1 cut(s) 962
SatI GCNGC 9 cut(s) 26, 42, 240, 243, 255, 258, 284, 511, 667
Sau3AI GATC 4 cut(s) 188, 376, 395, 501
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 4 cut(s) 503, 618, 631, 818
ScrFI CCNGG 1 cut(s) 186
SmlI CTYRAG 2 cut(s) 380, 961
SmoI CTYRAG 2 cut(s) 380, 961
Sse9I AATT 7 cut(s) 416, 422, 622, 883, 916, 1010, 1117
SsiI CCGC 3 cut(s) 511, 929, 1043
SspMI CTAG 2 cut(s) 246, 1001
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 4 cut(s) 78, 482, 954, 1173
TaiI ACGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 845, 904
TasI AATT 7 cut(s) 416, 422, 622, 883, 916, 1010, 1117
TatI WGTACW 2 cut(s) 596, 618
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 5 cut(s) 8, 56, 96, 385, 578
Tru1I TTAA 1 cut(s) 962
Tru9I TTAA 1 cut(s) 962
TseI GCWGC 8 cut(s) 25, 41, 239, 242, 254, 257, 283, 666
TspDTI ATGAA 3 cut(s) 88, 354, 615
Vha464I CTTAAG 1 cut(s) 961
XapI RAATTY 3 cut(s) 916, 1010, 1117
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 2 cut(s) 246, 1001
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.