AT3G27350

TPX2 (targeting protein for Xklp2) protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001269
Physical Location & Seq
Forward (+)
10125659 .. 10128756
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27350.1

Sequence Viewer

Length: 825 bp
ATGGGTGAATCTGCAGTTCTGGTTCATTCTTATTCCTTCGCAGCTCCTATTACTCGTAACGATTCTCATGAGGAGAATACGATTCATGCGTTAAGTCAATCAATATCATTTGGGAAATTCATGACAGAGAATCTAGAATGGGGGAAATGGTCAAGCTTTTCACATAAAAAGTATGTTGAAGAAGCAGAGAAATACTCACGTCCTGGATCTGTTGCACAGAAAAAAGCTTTCTTTGAAGCTCATTACAAGAGAATAGCTGAAGCTAAGAAAGCTGCAACGGAAGAACAACCATCCGTTACTCCTGCTGAGGTTTTGCTTCATACTTTGGAAACACAGCCTCCTCCTCCTCCTCCTCCTCTGGTGTTAAAGTATGGTGAAGAAGGACGTGAAAGAAACAGTTTTCAGATTGATGATCATGATGTGACTGATGAATTGGAAAATGTGATGTTTGGTGGTGATTATGTTAAGGAGGAGGAGGAGAAGAAGGTAGAGGAAGAGTTGTTGAAGGAGGATTGGTCTGTTGGTGAAAAGGAGAAACAACACAGGAAATCTGTAACTAAGAATAGACCGGTGTTTAGATTGTCTTTGGAGAAAACTATCCCTCCGAAATCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGCGAAAGACCGATGACTCAGGTAGAAGAAAAACCGGTTCACCGCCAGAGATTCGGTCTCTTGAGCTGTTTCATAAGTAATGCTAAAACTCAAGATCAGAACCAGAGCAGGAATAAGAGAAAGACGGAGAAGAAGAAGCAGTTTCTGTGTCTTTGTTTGAAGCCAAAGACTATAAGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2

Protein Analysis

274

Amino Acids

31.69

Weight (kDa)

7.14

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 685
AclWI GGATC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 279
AgeI ACCGGT 2 cut(s) 568, 676
AgsI TTSAA 4 cut(s) 179, 236, 505, 802
AjiI CACGTC 2 cut(s) 200, 386
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 8 cut(s) 44, 156, 227, 239, 257, 263, 272, 708
AluI AGCT 8 cut(s) 44, 156, 227, 239, 257, 263, 272, 708
Alw26I GTCTC 1 cut(s) 704
AlwI GGATC 1 cut(s) 214
AlwNI CAGNNNCTG 1 cut(s) 787
ApeKI GCWGC 2 cut(s) 41, 272
ApoI RAATTY 1 cut(s) 116
AsiGI ACCGGT 2 cut(s) 568, 676
AsuHPI GGTGA 5 cut(s) 17, 386, 467, 536, 674
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 53, 259
BccI CCATC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 704
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 12
BglII AGATCT 1 cut(s) 621
BisI GCNGC 2 cut(s) 42, 273
BlsI GCNGC 2 cut(s) 43, 274
Bme1390I CCNGG 1 cut(s) 204
BmgBI CACGTC 2 cut(s) 200, 386
BmrFI CCNGG 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 179, 211
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 2 cut(s) 717, 724
BsaI GGTCTC 1 cut(s) 704
BsaWI WCCGGW 2 cut(s) 568, 676
BsaXI ACNNNNNCTCC 6 cut(s) 322, 352, 500, 530, 586, 616
Bse118I RCCGGY 2 cut(s) 568, 676
BseBI CCWGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 297, 674
BseXI GCAGC 2 cut(s) 53, 259
BshTI ACCGGT 2 cut(s) 568, 676
BsiSI CCGG 2 cut(s) 569, 677
BsmAI GTCTC 1 cut(s) 704
Bso31I GGTCTC 1 cut(s) 704
Bsp143I GATC 4 cut(s) 206, 412, 621, 736
BspACI CCGC 1 cut(s) 685
BspCNI CTCAG 2 cut(s) 298, 673
BspHI TCATGA 3 cut(s) 67, 120, 415
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 1 cut(s) 214
BspTNI GGTCTC 1 cut(s) 704
BsrFI RCCGGY 2 cut(s) 568, 676
BssAI RCCGGY 2 cut(s) 568, 676
BssMI GATC 4 cut(s) 206, 412, 621, 736
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 489
BstDEI CTNAG 4 cut(s) 264, 306, 558, 660
BstF5I GGATG 1 cut(s) 290
BstKTI GATC 4 cut(s) 209, 415, 624, 739
BstMAI GTCTC 1 cut(s) 704
BstMBI GATC 4 cut(s) 206, 412, 621, 736
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 53, 259
BstX2I RGATCY 2 cut(s) 206, 621
BstYI RGATCY 2 cut(s) 206, 621
BtrI CACGTC 2 cut(s) 200, 386
BtsCI GGATG 1 cut(s) 290
CaiI CAGNNNCTG 1 cut(s) 787
CciI TCATGA 3 cut(s) 67, 120, 415
Cfr10I RCCGGY 2 cut(s) 568, 676
CspAI ACCGGT 2 cut(s) 568, 676
CviAII CATG 4 cut(s) 68, 86, 121, 416
DdeI CTNAG 4 cut(s) 264, 306, 558, 660
DpnI GATC 4 cut(s) 208, 414, 623, 738
DpnII GATC 4 cut(s) 206, 412, 621, 736
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 704
Eco57I CTGAAG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 4 cut(s) 71, 89, 124, 419
FatI CATG 4 cut(s) 67, 85, 120, 415
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 42, 273
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 42, 273
FspBI CTAG 1 cut(s) 134
GluI GCNGC 2 cut(s) 42, 273
HapII CCGG 2 cut(s) 569, 677
Hin1II CATG 4 cut(s) 71, 89, 124, 419
HindIII AAGCTT 2 cut(s) 154, 225
HinfI GANTC 6 cut(s) 8, 62, 82, 130, 658, 693
HpaII CCGG 2 cut(s) 569, 677
HphI GGTGA 5 cut(s) 17, 386, 467, 536, 674
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 3 cut(s) 405, 606, 741
Hpy188III TCNNGA 6 cut(s) 68, 121, 134, 416, 703, 734
Hpy8I GTNNAC 1 cut(s) 682
HpyAV CCTTC 4 cut(s) 46, 374, 478, 499
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 2 cut(s) 199, 385
HpyCH4V TGCA 3 cut(s) 14, 215, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 4 cut(s) 264, 306, 558, 660
HpySE526I ACGT 2 cut(s) 199, 385
Hsp92II CATG 4 cut(s) 71, 89, 124, 419
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 4 cut(s) 206, 412, 621, 736
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 2 cut(s) 53, 259
MaeI CTAG 1 cut(s) 134
MaeII ACGT 2 cut(s) 199, 385
MaeIII GTNAC 4 cut(s) 56, 295, 421, 553
MalI GATC 4 cut(s) 208, 414, 623, 738
MboI GATC 4 cut(s) 206, 412, 621, 736
MboII GAAGA 8 cut(s) 191, 293, 389, 493, 506, 680, 784, 787
MflI RGATCY 2 cut(s) 206, 621
MluCI AATT 2 cut(s) 116, 431
MlyI GAGTC 1 cut(s) 652
MseI TTAA 4 cut(s) 92, 365, 465, 629
MspI CCGG 2 cut(s) 569, 677
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 4 cut(s) 206, 412, 621, 736
NlaIII CATG 4 cut(s) 71, 89, 124, 419
NmuCI GTSAC 1 cut(s) 421
PagI TCATGA 3 cut(s) 67, 120, 415
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 5 cut(s) 8, 62, 82, 130, 693
PfoI TCCNGGA 1 cut(s) 202
PinAI ACCGGT 2 cut(s) 568, 676
PkrI GCNGC 2 cut(s) 43, 274
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PstI CTGCAG 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 787
PsuI RGATCY 2 cut(s) 206, 621
SaqAI TTAA 4 cut(s) 92, 365, 465, 629
SatI GCNGC 2 cut(s) 42, 273
Sau3AI GATC 4 cut(s) 206, 412, 621, 736
SchI GAGTC 1 cut(s) 652
ScrFI CCNGG 1 cut(s) 204
SfcI CTRYAG 1 cut(s) 12
SmlI CTYRAG 2 cut(s) 703, 732
SmoI CTYRAG 2 cut(s) 703, 732
Sse9I AATT 2 cut(s) 116, 431
SsiI CCGC 1 cut(s) 685
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 2 cut(s) 202, 388
TaqII GACCGA 2 cut(s) 667, 686
TasI AATT 2 cut(s) 116, 431
TfiI GAWTC 5 cut(s) 8, 62, 82, 130, 693
Tru1I TTAA 4 cut(s) 92, 365, 465, 629
Tru9I TTAA 4 cut(s) 92, 365, 465, 629
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 2 cut(s) 41, 272
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 6 cut(s) 14, 74, 109, 308, 444, 703
TspGWI ACGGA 3 cut(s) 283, 293, 782
XapI RAATTY 1 cut(s) 116
XbaI TCTAGA 1 cut(s) 133
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.