MD09G1018500.v1.1

Targeting protein for Xklp2 (TPX2)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
1147568 .. 1150598
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1018500.v1.1.491

Sequence Viewer

Length: 1632 bp
ATGGGAGAATCGACGTGTCTGATGCGGCCGTTCTCCTATGCTTCCGGCATCCCCAACGACACATACGAGGGGAACCCGATTCATGCTCTCGGGCAGTCAGTGTCGTTCGGGAGGTTCGTGTCGGAGTCCGTAGCTTGGGATAAATGGTCGACAATCTCGCACAACCGGCATGTGGAGGAGGCCGAGAGGTACTCCCGCCCGGGTTCAGTTGCGCAGAAAAAGGCTTTCTTTGAAGCACATTACAAGAAAATCGCTGCTCAAAGAGCCGCTGCGGTGCTTGAACAAGCCAGTGCCAATGCCAATGCTGCTGCTGCATTGGAAAATGCCGCCGAAACCAAATCTGAAAGTCGGGATCGAAGGACGAGGATTTCAACCTCTGAAGTGTTCGTCGATGAGCAAAGGGAAGAGAAAGAGGAAGGGAAGGTCTACGAGCCAAATCGAGAAGAAGAATGCTTTGGTAAATATACCAATGACTATAATGCAAACACTGAAATGGAAAAATTTGAAAGCAGCAAGGTGCACCCTGTAGATCATGAAGACCAAGTTTTGGTGGAGAATTCAGCTGAGGTAGAACTTTCGAGCCGAAGTGCTGATAACAACAAGGAGGTAAACGAAATGGAGCTCACCGGCAAACCCCAGATCGAAAAGCCTCTGTTGAAGCAAAGTTACAGCTCGAATCAAGAAGCTTCGACCCCAGTGAAAACGAAAAAAACCAGACCTTTTATTTCCTCCAAATCATCATTAACATATCATAAAGCACCCAAAGTCCCATCTTCTCCAACCAAATCCACAGCTCCTAGTTGTTCCAGAAAGGATGACATTACCACTCCATTGCGTAAATATCCGGCCGCAGAGCTGGAGGACAAGAAGAAATCAACTCCGAAATCAATTCACAAGTCGTTCAGGTTTACACCCATCAGGGAACTTTCTAGGCTGACTTCAACCGTCATCAGGAAGATTGAAAACTCAAGAGCTGGTGCTAGTTCTTCCAAGACATCGAAAGATTGCCCGACTGCTCTGAGGACTCCAACTAAGGTATCTAAGAATGAGGTGCGCCAGCATTCCACCACCACCCCATGTTCAGAAAAGAGAAGGGCCAAAACACCACTTGATCCCTCAGCCAGTGGAACCAAAACTCCTGTGTCCAAATGGCGTTCACTCCGTACAGATTGTTCAAAGATTTTGAGTGCCTGCAGAAACAAGGCGAGGTCCCCATTTTCATCGGCCCCCTTCACCTTAAAAACTGAAGAAAGAGCTGCAAGTAGAAAGAAGAAGCTCGAAGAAAAGTTTAATGCAAATGAGGAACAAAAGGTGCAGGCGCAAAGAAAACTCAAGGAGAAAGAAGAAAAAGAGATTGGAAAGTACCGTCAAACGCTTTGCTTCAAGGCCAGGCCACTTCCTGATTTCTACAAAGACAGAAAATCACCAAAGAAGGAGATACAGAAGGTTCCAGTTACTCCTCAGTCAAAGAATCCAATCACAGTTGAGAGCTCAACGCCTCGACCTCCTAGTGGAGCTTCAATCAAGAGCATTAGCCAAGGAAGGAATAACCGAACCCCAACTCGTTCTCTCATTTCACGATCCATTAAGACTACTCGCGAGAATAAATCTCCAAATATTCAGCTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

544

Amino Acids

60.94

Weight (kDa)

9.74

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2 PF06886 411 - 478 5.7e-17 Targeting protein for Xklp2 (TPX2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 547
AccI GTMKAC 2 cut(s) 149, 426
AccII CGCG 1 cut(s) 1599
AciI CCGC 6 cut(s) 25, 196, 267, 272, 327, 849
AclWI GGATC 3 cut(s) 360, 1106, 1575
AcoI YGGCCR 2 cut(s) 26, 846
AcsI RAATTY 2 cut(s) 500, 556
AcuI CTGAAG 2 cut(s) 399, 1266
AfaI GTAC 3 cut(s) 191, 1165, 1364
AfiI CCNNNNNNNGG 5 cut(s) 135, 172, 547, 951, 1511
AflIII ACRYGT 1 cut(s) 14
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 1388
AjuI GAANNNNNNNTTGG 4 cut(s) 438, 470, 1338, 1370
AloI GAACNNNNNNTCC 2 cut(s) 1120, 1152
Alw21I GWGCWC 3 cut(s) 522, 624, 1493
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 3 cut(s) 360, 1106, 1575
Ama87I CYCGRG 2 cut(s) 89, 199
AoxI GGCC 7 cut(s) 26, 180, 846, 1095, 1224, 1386, 1391
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 7 cut(s) 254, 269, 305, 308, 311, 510, 1256
ApoI RAATTY 2 cut(s) 500, 556
AspLEI GCGC 3 cut(s) 214, 1056, 1321
AspS9I GGNCC 3 cut(s) 1095, 1209, 1225
AsuC2I CCSGG 2 cut(s) 200, 201
AsuHPI GGTGA 3 cut(s) 616, 1225, 1416
AvaI CYCGRG 2 cut(s) 89, 199
AvaII GGWCC 1 cut(s) 1209
BaeGI GKGCMC 1 cut(s) 522
BaeI ACNNNNGTAYC 2 cut(s) 1020, 1053
BanII GRGCYC 2 cut(s) 624, 1493
BarI GAAGNNNNNNTAC 2 cut(s) 650, 682
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 3 cut(s) 522, 624, 1493
BbvCI CCTCAGC 2 cut(s) 564, 1117
BbvI GCAGC 7 cut(s) 241, 256, 292, 295, 298, 522, 1243
BccI CCATC 2 cut(s) 778, 923
BceAI ACGGC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 1390
BcnI CCSGG 2 cut(s) 200, 201
BfaI CTAG 4 cut(s) 798, 930, 981, 1509
BfmI CTRYAG 2 cut(s) 525, 1192
Bme1390I CCNGG 3 cut(s) 200, 201, 1390
Bme18I GGWCC 1 cut(s) 1209
BmeT110I CYCGRG 2 cut(s) 89, 199
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 3 cut(s) 1095, 1209, 1225
BmiI GGNNCC 5 cut(s) 74, 1129, 1211, 1227, 1449
BmrFI CCNGG 3 cut(s) 200, 201, 1390
BmrI ACTGGG 1 cut(s) 689
BmsI GCATC 2 cut(s) 12, 57
BmuI ACTGGG 1 cut(s) 689
BpiI GAAGAC 1 cut(s) 543
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 1 cut(s) 878
Bpu10I CCTNAGC 2 cut(s) 564, 1117
BpuEI CTTGAG 2 cut(s) 952, 1316
BpuMI CCSGG 2 cut(s) 200, 201
BsaJI CCNNGG 2 cut(s) 199, 1537
BsaXI ACNNNNNCTCC 2 cut(s) 1120, 1150
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 172, 547, 951, 1511
Bse118I RCCGGY 2 cut(s) 165, 626
Bse1I ACTGG 4 cut(s) 288, 695, 1122, 1451
Bse3DI GCAATG 1 cut(s) 830
BseBI CCWGG 1 cut(s) 1390
BseDI CCNNGG 2 cut(s) 199, 1537
BseGI GGATG 2 cut(s) 48, 820
BseLI CCNNNNNNNGG 5 cut(s) 135, 172, 547, 951, 1511
BseMI GCAATG 1 cut(s) 830
BseMII CTCAG 4 cut(s) 555, 1010, 1131, 1475
BseNI ACTGG 4 cut(s) 288, 695, 1122, 1451
BseRI GAGGAG 2 cut(s) 191, 1449
BseSI GKGCMC 1 cut(s) 522
BseX3I CGGCCG 2 cut(s) 26, 846
BseXI GCAGC 7 cut(s) 241, 256, 292, 295, 298, 522, 1243
BsgI GTGCAG 1 cut(s) 1334
Bsh1236I CGCG 1 cut(s) 1599
Bsh1285I CGRYCG 2 cut(s) 29, 849
BshFI GGCC 7 cut(s) 28, 182, 848, 1097, 1226, 1388, 1393
BsiEI CGRYCG 2 cut(s) 29, 849
BsiHKAI GWGCWC 3 cut(s) 522, 624, 1493
BsiHKCI CYCGRG 2 cut(s) 89, 199
BsiSI CCGG 5 cut(s) 45, 166, 200, 627, 845
BslFI GGGAC 2 cut(s) 752, 1195
BslI CCNNNNNNNGG 5 cut(s) 135, 172, 547, 951, 1511
BsmFI GGGAC 2 cut(s) 752, 1195
BsmI GAATGC 2 cut(s) 455, 1060
BsnI GGCC 7 cut(s) 28, 182, 848, 1097, 1226, 1388, 1393
BsoBI CYCGRG 2 cut(s) 89, 199
Bsp1286I GDGCHC 3 cut(s) 522, 624, 1493
Bsp143I GATC 5 cut(s) 352, 529, 639, 1111, 1580
Bsp68I TCGCGA 1 cut(s) 1599
BspACI CCGC 6 cut(s) 25, 196, 267, 272, 327, 849
BspANI GGCC 7 cut(s) 28, 182, 848, 1097, 1226, 1388, 1393
BspCNI CTCAG 4 cut(s) 556, 1011, 1130, 1474
BspFNI CGCG 1 cut(s) 1599
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 5 cut(s) 74, 1129, 1211, 1227, 1449
BspMAI CTGCAG 1 cut(s) 1196
BspPI GGATC 3 cut(s) 360, 1106, 1575
BsrDI GCAATG 1 cut(s) 830
BsrFI RCCGGY 2 cut(s) 165, 626
BsrI ACTGG 4 cut(s) 288, 695, 1122, 1451
BssAI RCCGGY 2 cut(s) 165, 626
BssECI CCNNGG 2 cut(s) 199, 1537
BssMI GATC 5 cut(s) 352, 529, 639, 1111, 1580
BssT1I CCWWGG 1 cut(s) 1537
Bst2UI CCWGG 1 cut(s) 1390
Bst4CI ACNGT 3 cut(s) 946, 1367, 1483
Bst6I CTCTTC 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 1058, 1192, 1317
BstDEI CTNAG 6 cut(s) 564, 1019, 1032, 1041, 1117, 1461
BstF5I GGATG 2 cut(s) 48, 820
BstFNI CGCG 1 cut(s) 1599
BstHHI GCGC 3 cut(s) 214, 1056, 1321
BstKTI GATC 5 cut(s) 355, 532, 642, 1114, 1583
BstMBI GATC 5 cut(s) 352, 529, 639, 1111, 1580
BstMCI CGRYCG 2 cut(s) 29, 849
BstMWI GCNNNNNNNGC 4 cut(s) 166, 263, 305, 311
BstNI CCWGG 1 cut(s) 1390
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 3 cut(s) 198, 199, 1388
BstSFI CTRYAG 2 cut(s) 525, 1192
BstSLI GKGCMC 1 cut(s) 522
BstUI CGCG 1 cut(s) 1599
BstV1I GCAGC 7 cut(s) 241, 256, 292, 295, 298, 522, 1243
BstV2I GAAGAC 1 cut(s) 543
BstZI CGGCCG 2 cut(s) 26, 846
BsuRI GGCC 7 cut(s) 28, 182, 848, 1097, 1226, 1388, 1393
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 48, 820
BtsIMutI CAGTG 5 cut(s) 105, 295, 486, 702, 1129
BtuMI TCGCGA 1 cut(s) 1599
Cac8I GCNNGC 3 cut(s) 1058, 1192, 1317
CciI TCATGA 1 cut(s) 532
CfoI GCGC 3 cut(s) 214, 1056, 1321
Cfr10I RCCGGY 2 cut(s) 165, 626
Cfr13I GGNCC 3 cut(s) 1095, 1209, 1225
Cfr9I CCCGGG 1 cut(s) 199
Csp6I GTAC 3 cut(s) 190, 1164, 1363
CviAII CATG 4 cut(s) 83, 170, 533, 1077
CviQI GTAC 3 cut(s) 190, 1164, 1363
DdeI CTNAG 6 cut(s) 564, 1019, 1032, 1041, 1117, 1461
DpnI GATC 5 cut(s) 354, 531, 641, 1113, 1582
DpnII GATC 5 cut(s) 352, 529, 639, 1111, 1580
EaeI YGGCCR 2 cut(s) 26, 846
EagI CGGCCG 2 cut(s) 26, 846
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Ecl136II GAGCTC 2 cut(s) 622, 1491
EclXI CGGCCG 2 cut(s) 26, 846
Eco130I CCWWGG 1 cut(s) 1537
Eco24I GRGCYC 2 cut(s) 624, 1493
Eco47I GGWCC 1 cut(s) 1209
Eco52I CGGCCG 2 cut(s) 26, 846
Eco53kI GAGCTC 2 cut(s) 622, 1491
Eco57I CTGAAG 2 cut(s) 399, 1266
Eco88I CYCGRG 2 cut(s) 89, 199
EcoICRI GAGCTC 2 cut(s) 622, 1491
EcoO109I RGGNCCY 1 cut(s) 1209
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 1388
EcoT14I CCWWGG 1 cut(s) 1537
EcoT38I GRGCYC 2 cut(s) 624, 1493
ErhI CCWWGG 1 cut(s) 1537
FaeI CATG 4 cut(s) 86, 173, 536, 1080
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 2 cut(s) 752, 1195
FatI CATG 4 cut(s) 82, 169, 532, 1076
FauI CCCGC 1 cut(s) 203
FblI GTMKAC 2 cut(s) 149, 426
FokI GGATG 2 cut(s) 35, 827
FriOI GRGCYC 2 cut(s) 624, 1493
FspBI CTAG 4 cut(s) 798, 930, 981, 1509
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 3 cut(s) 213, 1055, 1320
GsuI CTGGAG 1 cut(s) 878
HaeIII GGCC 7 cut(s) 28, 182, 848, 1097, 1226, 1388, 1393
HapII CCGG 5 cut(s) 45, 166, 200, 627, 845
HhaI GCGC 3 cut(s) 214, 1056, 1321
Hin1II CATG 4 cut(s) 86, 173, 536, 1080
Hin6I GCGC 3 cut(s) 212, 1054, 1319
HinP1I GCGC 3 cut(s) 212, 1054, 1319
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 6 cut(s) 8, 79, 125, 676, 1024, 1471
HpaII CCGG 5 cut(s) 45, 166, 200, 627, 845
HphI GGTGA 3 cut(s) 616, 1225, 1416
Hpy166II GTNNAC 6 cut(s) 150, 427, 520, 610, 909, 1157
Hpy188I TCNGA 7 cut(s) 21, 124, 343, 379, 882, 1020, 1084
Hpy8I GTNNAC 6 cut(s) 150, 427, 520, 610, 909, 1157
Hpy99I CGWCG 2 cut(s) 16, 392
HpyAV CCTTC 8 cut(s) 351, 410, 415, 1086, 1240, 1426, 1438, 1536
HpyCH4III ACNGT 3 cut(s) 946, 1367, 1483
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 7 cut(s) 314, 482, 520, 1194, 1259, 1295, 1315
HpyF10VI GCNNNNNNNGC 4 cut(s) 166, 263, 305, 311
HpyF3I CTNAG 6 cut(s) 564, 1019, 1032, 1041, 1117, 1461
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 4 cut(s) 86, 173, 536, 1080
HspAI GCGC 3 cut(s) 212, 1054, 1319
Kzo9I GATC 5 cut(s) 352, 529, 639, 1111, 1580
LmnI GCTCC 3 cut(s) 619, 799, 1514
Lsp1109I GCAGC 7 cut(s) 241, 256, 292, 295, 298, 522, 1243
LweI GCATC 2 cut(s) 12, 57
MaeI CTAG 4 cut(s) 798, 930, 981, 1509
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 665, 1453
MalI GATC 5 cut(s) 354, 531, 641, 1113, 1582
MboI GATC 5 cut(s) 352, 529, 639, 1111, 1580
MhlI GDGCHC 3 cut(s) 522, 624, 1493
MluCI AATT 3 cut(s) 500, 556, 888
MlyI GAGTC 2 cut(s) 134, 1018
MmeI TCCRAC 3 cut(s) 102, 803, 1052
MseI TTAA 4 cut(s) 743, 1238, 1290, 1587
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 2 cut(s) 269, 563
MspI CCGG 5 cut(s) 45, 166, 200, 627, 845
MspR9I CCNGG 3 cut(s) 200, 201, 1390
Mva1269I GAATGC 2 cut(s) 455, 1060
MvaI CCWGG 1 cut(s) 1390
MvnI CGCG 1 cut(s) 1599
MwoI GCNNNNNNNGC 4 cut(s) 166, 263, 305, 311
NciI CCSGG 2 cut(s) 200, 201
NdeII GATC 5 cut(s) 352, 529, 639, 1111, 1580
NlaIII CATG 4 cut(s) 86, 173, 536, 1080
NlaIV GGNNCC 5 cut(s) 74, 1129, 1211, 1227, 1449
NmeAIII GCCGAG 1 cut(s) 208
NruI TCGCGA 1 cut(s) 1599
NsbI TGCGCA 1 cut(s) 213
NspI RCATGY 1 cut(s) 173
PagI TCATGA 1 cut(s) 532
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 114
PctI GAATGC 2 cut(s) 455, 1060
PfeI GAWTC 4 cut(s) 8, 79, 676, 1471
PflMI CCANNNNNTGG 1 cut(s) 547
PleI GAGTC 2 cut(s) 133, 1018
PpsI GAGTC 2 cut(s) 133, 1018
PpuMI RGGWCCY 1 cut(s) 1209
Psp124BI GAGCTC 2 cut(s) 624, 1493
Psp5II RGGWCCY 1 cut(s) 1209
Psp6I CCWGG 1 cut(s) 1388
PspGI CCWGG 1 cut(s) 1388
PspN4I GGNNCC 5 cut(s) 74, 1129, 1211, 1227, 1449
PspPI GGNCC 3 cut(s) 1095, 1209, 1225
PspPPI RGGWCCY 1 cut(s) 1209
PsrI GAACNNNNNNTAC 2 cut(s) 1156, 1188
PstI CTGCAG 1 cut(s) 1196
PvuII CAGCTG 1 cut(s) 563
RruI TCGCGA 1 cut(s) 1599
RsaI GTAC 3 cut(s) 191, 1165, 1364
RsaNI GTAC 3 cut(s) 190, 1164, 1363
RseI CAYNNNNRTG 1 cut(s) 491
SacI GAGCTC 2 cut(s) 624, 1493
SalI GTCGAC 1 cut(s) 148
SaqAI TTAA 4 cut(s) 743, 1238, 1290, 1587
Sau3AI GATC 5 cut(s) 352, 529, 639, 1111, 1580
Sau96I GGNCC 3 cut(s) 1095, 1209, 1225
SchI GAGTC 2 cut(s) 134, 1018
ScrFI CCNGG 3 cut(s) 200, 201, 1390
SduI GDGCHC 3 cut(s) 522, 624, 1493
SfaNI GCATC 2 cut(s) 12, 57
SfcI CTRYAG 2 cut(s) 525, 1192
SinI GGWCC 1 cut(s) 1209
SmaI CCCGGG 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 967, 1331
SmoI CTYRAG 2 cut(s) 967, 1331
Sse9I AATT 3 cut(s) 500, 556, 888
SsiI CCGC 6 cut(s) 25, 196, 267, 272, 327, 849
SspI AATATT 1 cut(s) 1618
SspMI CTAG 4 cut(s) 798, 930, 981, 1509
SstI GAGCTC 2 cut(s) 624, 1493
StyD4I CCNGG 3 cut(s) 198, 199, 1388
StyI CCWWGG 1 cut(s) 1537
TaaI ACNGT 3 cut(s) 946, 1367, 1483
TaiI ACGT 1 cut(s) 17
TasI AATT 3 cut(s) 500, 556, 888
TauI GCSGC 4 cut(s) 28, 269, 329, 851
TfiI GAWTC 4 cut(s) 8, 79, 676, 1471
Tru1I TTAA 4 cut(s) 743, 1238, 1290, 1587
Tru9I TTAA 4 cut(s) 743, 1238, 1290, 1587
TscAI CASTG 5 cut(s) 105, 295, 493, 702, 1129
TseI GCWGC 7 cut(s) 254, 269, 305, 308, 311, 510, 1256
TspDTI ATGAA 3 cut(s) 71, 549, 1209
TspGWI ACGGA 2 cut(s) 118, 1151
TspMI CCCGGG 1 cut(s) 199
TspRI CASTG 5 cut(s) 105, 295, 493, 702, 1129
Van91I CCANNNNNTGG 1 cut(s) 547
VneI GTGCAC 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 1209
XapI RAATTY 2 cut(s) 500, 556
XceI RCATGY 1 cut(s) 173
XmaI CCCGGG 1 cut(s) 199
XmiI GTMKAC 2 cut(s) 149, 426
XspI CTAG 4 cut(s) 798, 930, 981, 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.