FvH4_4g24860

TPX2 (targeting protein for Xklp2) protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001269
Physical Location & Seq
Forward (+)
26833693 .. 26838903
5211 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24860.t2

Sequence Viewer

Length: 1662 bp
ATGGGTGACTCTTCGTGTCTAATGAGGTCGTTTTCTGGGCCGTCTGAGTGTTCTGGTGAAGTCAAAGAGGGGGACCTCCTTCGGTGCCTAGGAGAATCAGTGTCATTCGGCAGGTATGCTTCAGAACCTCTTGATTGGGCAAAATGGTCAGCATTTTCTCACAATAGGTATCTGGAAGAAGCGGAGAAGTTTTCCAAACCAGGCTCGGTTGCGCAGAAGAAGGCGTACTTTGAAGCTCACTACAAGAAAAAGGCTGCTGAGAAAGCAGCAGCTTTGGCTGAGGTCGCAAATACATGTGCCAGCAGAGTTTCTGAGTCAGTTTCTATGCACGAGAGTTGCCAAAGCTCCTGTGCCAACATGGAGTTGGCAAATGGAGAGAACCAGATGGTTGAGGAAATTGCTGTTCCAATCATTGAGGTGGTATACTCAGCTCATGTGAATGATCACAATACAGATGTTGAAGGGACTCAATTGGAACTTGCAAAGGTGGATGGACCAGAGACGGTGATTCAAGATAGTGTTACTGTGGAGGATGCTGTCCAGGGTGAGGTGGAGAAGTCTATTCAGGATGAAATGGAGACTTCAATTCAGGTTGAGATGGAGAGTTCTACTCAAGCTGAACTATCAAACCAGTTAGAAAATGACCAGAAGGAGATTGTTAATGGTGCCACCCAAGAAGAGAAGATGCCTACTAAGGAAGCAATTAGCGAGAAAAATCTAACTTCACCAAGCAAGAAAAGATCGGTGAACTCTTCTCCCTCAAGGTTATCTACTCAAGGTAGACCGTCCAAGATCCCATCTTTTCCTGCCAAACAAATGGCCGGTGTTCCAACGGGAAAGAAGAACAATGCCACCCCAAAGACTAAGAACTCTGAGGCTGAATTAGTTGACAAGAGGAGATCAACAACAAAATCACTGCACATGTCAATCAGTTTCACTTCTCATGCCAGTGAAACCAGTAAGAGAACTTCACCAGTCCTGGAGAAGATCAAAAAGTTAAGAGTTCATAAAACTGCGCTTAAGAGTTCAACTTCCCTACCAACTGCAACCAGGGCATCTGTTAATGGGTTACTAACAGAAACTTCAGTAAACCCATGGTCCAAAGATAGAAGGGCAAAAACAAAACTTAATAAGCTGGTAACTGGGAGTGTCACTGCAGATGGGATATGCAAATCACCCTCAAAAGATCAATCTCTTGCTGCAAATGGAAGCAAACCACGAGGTCCTATCAAGTCCTGTCCTTTTAGCCTTAAGAGTGACGAAAGAGCAGCAAAACGGAAAGAGTTCTTTCAGAGGCTGGAAGAGAAGAGAAGTATAGAGGCAGAAATTAAGCAGTCGCAAATGAGATCTAATAAGGAAAAAGCAGTGCATGATGTTAAAAAATTGCGTCAGAGTACAGGCTTTAAAGCCAAAGATCTGTCTTCTGGATCACAATTGCTAAGTAACAACTTGAAGAAGGTTCCACCAACCCAGAGTCAGTCACAGAAGCTCGAGAGGCAGTCCACTACCAGCAAGATTCTGAACCCTAGCATTCGGTCTTCAGTCAATTCTCACAGCTCTAAGCATGTCACACAGAGTAATAATCAAAGGATAAGCCGATCAGTCACTTCCCTTCCAAAGAAGAATGCTCATGAGAATTCTTCTCCTAATATTCAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2

Protein Analysis

554

Amino Acids

60.56

Weight (kDa)

9.35

Isoelectric Point (pI)

58.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 102
AccB1I GGYRCC 2 cut(s) 84, 665
AccI GTMKAC 2 cut(s) 423, 781
AciI CCGC 1 cut(s) 182
AclWI GGATC 2 cut(s) 787, 1435
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 1 cut(s) 1636
AcuI CTGAAG 3 cut(s) 105, 1068, 1524
AfaI GTAC 2 cut(s) 227, 1396
AfiI CCNNNNNNNGG 1 cut(s) 547
AflII CTTAAG 2 cut(s) 1019, 1250
AflIII ACRYGT 2 cut(s) 293, 921
AgsI TTSAA 6 cut(s) 233, 461, 512, 585, 1029, 1453
AjnI CCWGG 4 cut(s) 199, 540, 978, 1049
AluBI AGCT 8 cut(s) 236, 272, 345, 431, 617, 1135, 1489, 1557
AluI AGCT 8 cut(s) 236, 272, 345, 431, 617, 1135, 1489, 1557
Alw26I GTCTC 2 cut(s) 494, 572
AlwI GGATC 2 cut(s) 787, 1435
AlwNI CAGNNNCTG 1 cut(s) 1297
Ama87I CYCGRG 1 cut(s) 1490
AoxI GGCC 2 cut(s) 38, 819
ApeKI GCWGC 5 cut(s) 254, 266, 269, 1199, 1268
ApoI RAATTY 1 cut(s) 1636
Asp700I GAANNNNTTC 1 cut(s) 1283
AspA2I CCTAGG 1 cut(s) 88
AspLEI GCGC 2 cut(s) 214, 1018
AspS9I GGNCC 5 cut(s) 38, 73, 494, 1098, 1223
AsuHPI GGTGA 8 cut(s) 17, 68, 517, 557, 717, 757, 963, 1167
AvaI CYCGRG 1 cut(s) 1490
AvaII GGWCC 4 cut(s) 73, 494, 1098, 1223
AvrII CCTAGG 1 cut(s) 88
BanI GGYRCC 2 cut(s) 84, 665
BarI GAAGNNNNNNTAC 4 cut(s) 209, 241, 952, 984
BauI CACGAG 2 cut(s) 329, 1218
BbsI GAAGAC 2 cut(s) 1413, 1530
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 5 cut(s) 241, 278, 281, 1186, 1280
BccI CCATC 5 cut(s) 379, 485, 592, 805, 1154
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 4 cut(s) 201, 542, 980, 1051
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 494, 572
BfaI CTAG 2 cut(s) 89, 1527
BfmI CTRYAG 1 cut(s) 1155
BfrI CTTAAG 2 cut(s) 1019, 1250
BfuAI ACCTGC 1 cut(s) 102
BglII AGATCT 2 cut(s) 1346, 1414
BisI GCNGC 5 cut(s) 255, 267, 270, 1200, 1269
BlnI CCTAGG 1 cut(s) 88
BlsI GCNGC 5 cut(s) 256, 268, 271, 1201, 1270
Bme1390I CCNGG 4 cut(s) 201, 542, 980, 1051
Bme18I GGWCC 4 cut(s) 73, 494, 1098, 1223
BmeT110I CYCGRG 1 cut(s) 1490
BmgT120I GGNCC 5 cut(s) 38, 73, 494, 1098, 1223
BmiI GGNNCC 4 cut(s) 74, 86, 667, 1461
BmrFI CCNGG 4 cut(s) 201, 542, 980, 1051
BmrI ACTGGG 1 cut(s) 1152
BmsI GCATC 3 cut(s) 523, 675, 1064
BmuI ACTGGG 1 cut(s) 1152
BpiI GAAGAC 2 cut(s) 1413, 1530
BplI GAGNNNNNCTC 2 cut(s) 595, 627
BpmI CTGGAG 1 cut(s) 1001
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 3 cut(s) 597, 745, 759
BsaJI CCNNGG 4 cut(s) 88, 541, 1050, 1094
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse118I RCCGGY 1 cut(s) 821
Bse1I ACTGG 5 cut(s) 631, 948, 957, 974, 1147
BseBI CCWGG 4 cut(s) 201, 542, 980, 1051
BseDI CCNNGG 4 cut(s) 88, 541, 1050, 1094
BseGI GGATG 3 cut(s) 496, 538, 574
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMII CTCAG 6 cut(s) 36, 249, 270, 303, 441, 864
BseNI ACTGG 5 cut(s) 631, 948, 957, 974, 1147
BseRI GAGGAG 1 cut(s) 910
BseXI GCAGC 5 cut(s) 241, 278, 281, 1186, 1280
BsgI GTGCAG 1 cut(s) 902
BshFI GGCC 2 cut(s) 40, 821
BshNI GGYRCC 2 cut(s) 84, 665
BsiHKCI CYCGRG 1 cut(s) 1490
BsiSI CCGG 1 cut(s) 822
BslFI GGGAC 2 cut(s) 86, 478
BslI CCNNNNNNNGG 1 cut(s) 547
BsmAI GTCTC 2 cut(s) 494, 572
BsmBI CGTCTC 1 cut(s) 494
BsmFI GGGAC 2 cut(s) 86, 478
BsmI GAATGC 2 cut(s) 1530, 1630
BsnI GGCC 2 cut(s) 40, 821
BsoBI CYCGRG 1 cut(s) 1490
Bsp19I CCATGG 1 cut(s) 1094
BspACI CCGC 1 cut(s) 182
BspANI GGCC 2 cut(s) 40, 821
BspCNI CTCAG 6 cut(s) 37, 250, 271, 304, 440, 865
BspHI TCATGA 1 cut(s) 1630
BspLI GGNNCC 4 cut(s) 74, 86, 667, 1461
BspMAI CTGCAG 1 cut(s) 1159
BspMI ACCTGC 1 cut(s) 102
BspPI GGATC 2 cut(s) 787, 1435
BspT107I GGYRCC 2 cut(s) 84, 665
BspTI CTTAAG 2 cut(s) 1019, 1250
BsrFI RCCGGY 1 cut(s) 821
BsrI ACTGG 5 cut(s) 631, 948, 957, 974, 1147
BssAI RCCGGY 1 cut(s) 821
BssECI CCNNGG 4 cut(s) 88, 541, 1050, 1094
BssNAI GTATAC 1 cut(s) 424
BssSI CACGAG 2 cut(s) 329, 1218
BssT1I CCWWGG 2 cut(s) 88, 1094
Bst1107I GTATAC 1 cut(s) 424
Bst2BI CACGAG 2 cut(s) 329, 1218
Bst2UI CCWGG 4 cut(s) 201, 542, 980, 1051
Bst4CI ACNGT 3 cut(s) 505, 526, 786
Bst6I CTCTTC 5 cut(s) 16, 672, 757, 1296, 1301
BstAFI CTTAAG 2 cut(s) 1019, 1250
BstC8I GCNNGC 1 cut(s) 301
BstDSI CCRYGG 1 cut(s) 1094
BstF5I GGATG 3 cut(s) 496, 538, 574
BstHHI GCGC 2 cut(s) 214, 1018
BstMAI GTCTC 2 cut(s) 494, 572
BstMWI GCNNNNNNNGC 5 cut(s) 263, 275, 284, 1052, 1495
BstNI CCWGG 4 cut(s) 201, 542, 980, 1051
BstNSI RCATGY 3 cut(s) 297, 925, 1568
BstSCI CCNGG 4 cut(s) 199, 540, 978, 1049
BstSFI CTRYAG 1 cut(s) 1155
BstV1I GCAGC 5 cut(s) 241, 278, 281, 1186, 1280
BstV2I GAAGAC 2 cut(s) 1413, 1530
BstX2I RGATCY 3 cut(s) 792, 1346, 1414
BstXI CCANNNNNNTGG 1 cut(s) 817
BstYI RGATCY 3 cut(s) 792, 1346, 1414
BstZ17I GTATAC 1 cut(s) 424
BsuRI GGCC 2 cut(s) 40, 821
BtgI CCRYGG 1 cut(s) 1094
BtsCI GGATG 3 cut(s) 496, 538, 574
BtsI GCAGTG 3 cut(s) 914, 1152, 1371
BtsIMutI CAGTG 5 cut(s) 105, 914, 955, 1152, 1371
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 1297
CciI TCATGA 1 cut(s) 1630
CfoI GCGC 2 cut(s) 214, 1018
Cfr10I RCCGGY 1 cut(s) 821
Cfr13I GGNCC 5 cut(s) 38, 73, 494, 1098, 1223
CseI GACGC 1 cut(s) 1376
Csp6I GTAC 2 cut(s) 226, 1395
CviAII CATG 9 cut(s) 294, 358, 434, 922, 944, 1095, 1370, 1565, 1631
CviQI GTAC 2 cut(s) 226, 1395
DraI TTTAAA 1 cut(s) 1405
EaeI YGGCCR 1 cut(s) 819
Eam1104I CTCTTC 5 cut(s) 16, 672, 757, 1296, 1301
EarI CTCTTC 5 cut(s) 16, 672, 757, 1296, 1301
Eco130I CCWWGG 2 cut(s) 88, 1094
Eco47I GGWCC 4 cut(s) 73, 494, 1098, 1223
Eco57I CTGAAG 3 cut(s) 105, 1068, 1524
Eco88I CYCGRG 1 cut(s) 1490
EcoO109I RGGNCCY 2 cut(s) 73, 1223
EcoRI GAATTC 1 cut(s) 1636
EcoRII CCWGG 4 cut(s) 199, 540, 978, 1049
EcoT14I CCWWGG 2 cut(s) 88, 1094
ErhI CCWWGG 2 cut(s) 88, 1094
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 9 cut(s) 297, 361, 437, 925, 947, 1098, 1373, 1568, 1634
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 2 cut(s) 86, 478
FatI CATG 9 cut(s) 293, 357, 433, 921, 943, 1094, 1369, 1564, 1630
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 2 cut(s) 423, 781
Fnu4HI GCNGC 5 cut(s) 255, 267, 270, 1200, 1269
FokI GGATG 3 cut(s) 503, 545, 581
Fsp4HI GCNGC 5 cut(s) 255, 267, 270, 1200, 1269
FspBI CTAG 2 cut(s) 89, 1527
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 2 cut(s) 213, 1017
GluI GCNGC 5 cut(s) 255, 267, 270, 1200, 1269
GsuI CTGGAG 1 cut(s) 1001
HaeIII GGCC 2 cut(s) 40, 821
HapII CCGG 1 cut(s) 822
HgaI GACGC 1 cut(s) 1376
HhaI GCGC 2 cut(s) 214, 1018
Hin1II CATG 9 cut(s) 297, 361, 437, 925, 947, 1098, 1373, 1568, 1634
Hin6I GCGC 2 cut(s) 212, 1016
HinP1I GCGC 2 cut(s) 212, 1016
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HinfI GANTC 7 cut(s) 8, 95, 314, 466, 508, 1474, 1516
HpaII CCGG 1 cut(s) 822
HphI GGTGA 8 cut(s) 17, 68, 517, 557, 717, 757, 963, 1167
Hpy166II GTNNAC 6 cut(s) 424, 748, 782, 889, 1090, 1503
Hpy188I TCNGA 8 cut(s) 46, 124, 313, 874, 1293, 1392, 1521, 1656
Hpy188III TCNNGA 7 cut(s) 131, 173, 512, 566, 1425, 1492, 1631
Hpy8I GTNNAC 6 cut(s) 424, 748, 782, 889, 1090, 1503
HpyAV CCTTC 7 cut(s) 89, 214, 455, 643, 1104, 1450, 1622
HpyCH4III ACNGT 3 cut(s) 505, 526, 786
HpyCH4V TGCA 8 cut(s) 328, 482, 919, 1046, 1157, 1170, 1202, 1369
HpyF10VI GCNNNNNNNGC 5 cut(s) 263, 275, 284, 1052, 1495
Hsp92II CATG 9 cut(s) 297, 361, 437, 925, 947, 1098, 1373, 1568, 1634
HspAI GCGC 2 cut(s) 212, 1016
Ksp22I TGATCA 1 cut(s) 442
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 5 cut(s) 241, 278, 281, 1186, 1280
LweI GCATC 3 cut(s) 523, 675, 1064
MaeI CTAG 2 cut(s) 89, 1527
MfeI CAATTG 2 cut(s) 470, 1433
MflI RGATCY 3 cut(s) 792, 1346, 1414
MlyI GAGTC 4 cut(s) 2, 323, 460, 1483
MmeI TCCRAC 1 cut(s) 854
MroXI GAANNNNTTC 1 cut(s) 1283
MseI TTAA 9 cut(s) 660, 998, 1020, 1062, 1128, 1251, 1329, 1377, 1404
MslI CAYNNNNRTG 3 cut(s) 416, 438, 948
MspCI CTTAAG 2 cut(s) 1019, 1250
MspI CCGG 1 cut(s) 822
MspR9I CCNGG 4 cut(s) 201, 542, 980, 1051
MunI CAATTG 2 cut(s) 470, 1433
Mva1269I GAATGC 2 cut(s) 1530, 1630
MvaI CCWGG 4 cut(s) 201, 542, 980, 1051
MwoI GCNNNNNNNGC 5 cut(s) 263, 275, 284, 1052, 1495
NcoI CCATGG 1 cut(s) 1094
NlaIII CATG 9 cut(s) 297, 361, 437, 925, 947, 1098, 1373, 1568, 1634
NlaIV GGNNCC 4 cut(s) 74, 86, 667, 1461
NmuCI GTSAC 6 cut(s) 5, 1150, 1256, 1479, 1567, 1603
NsbI TGCGCA 1 cut(s) 213
NspI RCATGY 3 cut(s) 297, 925, 1568
PaeR7I CTCGAG 1 cut(s) 1490
PagI TCATGA 1 cut(s) 1630
PciI ACATGT 2 cut(s) 293, 921
PctI GAATGC 2 cut(s) 1530, 1630
PdmI GAANNNNTTC 1 cut(s) 1283
PfeI GAWTC 3 cut(s) 95, 508, 1516
PfoI TCCNGGA 1 cut(s) 978
PkrI GCNGC 5 cut(s) 256, 268, 271, 1201, 1270
PleI GAGTC 4 cut(s) 2, 322, 460, 1482
PpsI GAGTC 4 cut(s) 2, 322, 460, 1482
PpuMI RGGWCCY 2 cut(s) 73, 1223
PscI ACATGT 2 cut(s) 293, 921
Psp5II RGGWCCY 2 cut(s) 73, 1223
Psp6I CCWGG 4 cut(s) 199, 540, 978, 1049
PspGI CCWGG 4 cut(s) 199, 540, 978, 1049
PspN4I GGNNCC 4 cut(s) 74, 86, 667, 1461
PspPI GGNCC 5 cut(s) 38, 73, 494, 1098, 1223
PspPPI RGGWCCY 2 cut(s) 73, 1223
PstI CTGCAG 1 cut(s) 1159
PstNI CAGNNNCTG 1 cut(s) 1297
PsuI RGATCY 3 cut(s) 792, 1346, 1414
RsaI GTAC 2 cut(s) 227, 1396
RsaNI GTAC 2 cut(s) 226, 1395
RseI CAYNNNNRTG 3 cut(s) 416, 438, 948
SaqAI TTAA 9 cut(s) 660, 998, 1020, 1062, 1128, 1251, 1329, 1377, 1404
SatI GCNGC 5 cut(s) 255, 267, 270, 1200, 1269
Sau96I GGNCC 5 cut(s) 38, 73, 494, 1098, 1223
SchI GAGTC 4 cut(s) 2, 323, 460, 1483
ScrFI CCNGG 4 cut(s) 201, 542, 980, 1051
SfaNI GCATC 3 cut(s) 523, 675, 1064
SfcI CTRYAG 1 cut(s) 1155
Sfr274I CTCGAG 1 cut(s) 1490
SinI GGWCC 4 cut(s) 73, 494, 1098, 1223
SlaI CTCGAG 1 cut(s) 1490
SmiMI CAYNNNNRTG 3 cut(s) 416, 438, 948
SmlI CTYRAG 6 cut(s) 612, 760, 774, 1019, 1250, 1490
SmoI CTYRAG 6 cut(s) 612, 760, 774, 1019, 1250, 1490
SsiI CCGC 1 cut(s) 182
SspI AATATT 1 cut(s) 1651
SspMI CTAG 2 cut(s) 89, 1527
StyD4I CCNGG 4 cut(s) 199, 540, 978, 1049
StyI CCWWGG 2 cut(s) 88, 1094
TaaI ACNGT 3 cut(s) 505, 526, 786
TaqI TCGA 1 cut(s) 1491
TaqII GACCGA 1 cut(s) 1524
TatI WGTACW 1 cut(s) 1394
TfiI GAWTC 3 cut(s) 95, 508, 1516
Tru1I TTAA 9 cut(s) 660, 998, 1020, 1062, 1128, 1251, 1329, 1377, 1404
Tru9I TTAA 9 cut(s) 660, 998, 1020, 1062, 1128, 1251, 1329, 1377, 1404
TscAI CASTG 5 cut(s) 105, 921, 955, 1159, 1371
TseFI GTSAC 6 cut(s) 5, 1150, 1256, 1479, 1567, 1603
TseI GCWGC 5 cut(s) 254, 266, 269, 1199, 1268
Tsp45I GTSAC 6 cut(s) 5, 1150, 1256, 1479, 1567, 1603
TspDTI ATGAA 2 cut(s) 585, 995
TspGWI ACGGA 1 cut(s) 1291
TspRI CASTG 5 cut(s) 105, 921, 955, 1159, 1371
Vha464I CTTAAG 2 cut(s) 1019, 1250
VpaK11BI GGWCC 4 cut(s) 73, 494, 1098, 1223
XapI RAATTY 1 cut(s) 1636
XceI RCATGY 3 cut(s) 297, 925, 1568
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XhoI CTCGAG 1 cut(s) 1490
XmaJI CCTAGG 1 cut(s) 88
XmiI GTMKAC 2 cut(s) 423, 781
XmnI GAANNNNTTC 1 cut(s) 1283
XspI CTAG 2 cut(s) 89, 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.