AT5G40700

TPX2 (targeting protein for Xklp2) protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001269
Physical Location & Seq
Reverse (-)
16291755 .. 16293649
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40700.3

Sequence Viewer

Length: 909 bp
ATGGCTGAATCTGCTGTTCTGTTTCATTCCTATTCGTTCGCAGCTCCTCCTTCTCGTAATGAATCTCATGAGGATAATACGATGCATGCGCTTAGTCAATCAGTTTCATTTGGTAGATTCATGACAGAGAATCTTGAATGGGGGAAATGGTCAAGTTTTTCGCATAAGAAGTATGTCGATGAAGCTGAGAAGTTCTCTCAGCCTGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCTCATTACAAGAAAATAGCTGAAGCAAAGAAAGCAAAAGCTTCAGATCAATCATCTGATTCTGACCCTAAACAAGAACCAGAAAGTGTTGCGGTGTTGCTTAACACTTTGGAGACATTGACTAAGGATGAGGTTAAGGAAGAAGAGGGTGATGAAACTGAGTTAGTCTTGAGTAGTAGTGAAGAGTTGGTGTTGAGTATTGAGAAAGATGATGAGCCAGTAAGAACAAATGTTGCGGTTTTGGAACAAGAAGATGATTTGCAGGTTATTCATGATGATAAAGAGAAAGATAATCACTCTGAGGATGGAGAGTTGGTGAAGAAGAGTTGTTTCGTTGGAGAGAAAGAAGAAGAGAGAAAATCCGTAACCAAGAACTCATCGGTGGTTAGATTGTCTATAGAGAAATCAGCAACTTCTGAAACTCCGGACAAAGCAATGGAGCTTGTTTTCTCACTGAAAATAAGTGGAAAACCGATAACTCATAGTTCGTTGACGAAAAGCGAAAAACCAGTTCGTCCTAGATTCGGTTTCTTGAGCTGTTTGATGGGAAACACTAAAACTCAAGATCAAAAGCTGACTATAAAGAAGAGAAAGACGAGTAAGAAACCATTTCTATGTCTTTGCTTCAAACCCGAGATGGCTGGGGAAACAGAAGCAGGAAGACAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2

Protein Analysis

302

Amino Acids

33.93

Weight (kDa)

5.56

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 490
AccIII TCCGGA 1 cut(s) 661
AciI CCGC 2 cut(s) 329, 473
AclWI GGATC 1 cut(s) 214
AcuI CTGAAG 2 cut(s) 264, 279
AfiI CCNNNNNNNGG 1 cut(s) 761
AgsI TTSAA 3 cut(s) 137, 236, 865
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 9 cut(s) 44, 185, 227, 239, 257, 278, 679, 774, 811
AluI AGCT 9 cut(s) 44, 185, 227, 239, 257, 278, 679, 774, 811
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 869
Aor13HI TCCGGA 1 cut(s) 661
ApeKI GCWGC 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 91
AsuHPI GGTGA 2 cut(s) 398, 565
AvaI CYCGRG 1 cut(s) 869
BbsI GAAGAC 1 cut(s) 904
BbvI GCAGC 1 cut(s) 53
BccI CCATC 3 cut(s) 536, 775, 868
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 1 cut(s) 633
BfuAI ACCTGC 1 cut(s) 490
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 869
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 904
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BpuEI CTTGAG 3 cut(s) 427, 783, 790
BsaWI WCCGGW 1 cut(s) 661
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse1I ACTGG 2 cut(s) 455, 746
Bse3DI GCAATG 1 cut(s) 678
BseAI TCCGGA 1 cut(s) 661
BseBI CCWGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 370, 547
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 5 cut(s) 177, 212, 230, 387, 528
BseNI ACTGG 2 cut(s) 455, 746
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 878
BsiHKCI CYCGRG 1 cut(s) 869
BsiSI CCGG 1 cut(s) 662
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 869
Bsp13I TCCGGA 1 cut(s) 661
Bsp143I GATC 3 cut(s) 206, 283, 802
BspACI CCGC 2 cut(s) 329, 473
BspCNI CTCAG 5 cut(s) 178, 211, 229, 388, 529
BspEI TCCGGA 1 cut(s) 661
BspHI TCATGA 3 cut(s) 67, 120, 508
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 678
BsrI ACTGG 2 cut(s) 455, 746
BssMI GATC 3 cut(s) 206, 283, 802
Bst2UI CCWGG 1 cut(s) 204
Bst6I CTCTTC 5 cut(s) 375, 414, 554, 582, 818
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 7 cut(s) 92, 186, 198, 216, 360, 396, 537
BstF5I GGATG 2 cut(s) 370, 547
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 3 cut(s) 209, 286, 805
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 3 cut(s) 206, 283, 802
BstMWI GCNNNNNNNGC 2 cut(s) 11, 269
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 633
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 904
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BtsCI GGATG 2 cut(s) 370, 547
BtsIMutI CAGTG 1 cut(s) 689
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 1 cut(s) 87
CciI TCATGA 3 cut(s) 67, 120, 508
CfoI GCGC 1 cut(s) 91
CviAII CATG 4 cut(s) 68, 86, 121, 509
DdeI CTNAG 7 cut(s) 92, 186, 198, 216, 360, 396, 537
DpnI GATC 3 cut(s) 208, 285, 804
DpnII GATC 3 cut(s) 206, 283, 802
Eam1104I CTCTTC 5 cut(s) 375, 414, 554, 582, 818
EarI CTCTTC 5 cut(s) 375, 414, 554, 582, 818
Eco57I CTGAAG 2 cut(s) 264, 279
Eco88I CYCGRG 1 cut(s) 869
EcoRII CCWGG 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 87
FaeI CATG 4 cut(s) 71, 89, 124, 512
FatI CATG 4 cut(s) 67, 85, 120, 508
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 377, 554
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 756
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 882
HapII CCGG 1 cut(s) 662
HhaI GCGC 1 cut(s) 91
Hin1II CATG 4 cut(s) 71, 89, 124, 512
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HindIII AAGCTT 2 cut(s) 225, 276
HinfI GANTC 6 cut(s) 8, 62, 117, 130, 296, 759
HpaII CCGG 1 cut(s) 662
HphI GGTGA 2 cut(s) 398, 565
Hpy166II GTNNAC 1 cut(s) 729
Hpy188I TCNGA 6 cut(s) 219, 283, 295, 301, 538, 655
Hpy188III TCNNGA 8 cut(s) 68, 121, 134, 406, 509, 662, 769, 800
Hpy8I GTNNAC 1 cut(s) 729
HpyAV CCTTC 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 85, 499
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 269
HpyF3I CTNAG 7 cut(s) 92, 186, 198, 216, 360, 396, 537
Hsp92II CATG 4 cut(s) 71, 89, 124, 512
HspAI GCGC 1 cut(s) 89
Kpn2I TCCGGA 1 cut(s) 661
Kzo9I GATC 3 cut(s) 206, 283, 802
LmnI GCTCC 2 cut(s) 49, 676
LpnPI CCDG 9 cut(s) 189, 216, 330, 468, 485, 675, 759, 864, 879
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 756
MaeIII GTNAC 1 cut(s) 601
MalI GATC 3 cut(s) 208, 285, 804
MboI GATC 3 cut(s) 206, 283, 802
MflI RGATCY 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 5 cut(s) 57, 64, 361, 376, 532
Mph1103I ATGCAT 1 cut(s) 87
MroI TCCGGA 1 cut(s) 661
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 2 cut(s) 339, 372
MslI CAYNNNNRTG 1 cut(s) 850
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 11, 269
NdeII GATC 3 cut(s) 206, 283, 802
NlaIII CATG 4 cut(s) 71, 89, 124, 512
NsiI ATGCAT 1 cut(s) 87
NspI RCATGY 1 cut(s) 89
PaeI GCATGC 1 cut(s) 89
PagI TCATGA 3 cut(s) 67, 120, 508
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 6 cut(s) 8, 62, 117, 130, 296, 759
PkrI GCNGC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 878
PspGI CCWGG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 850
SaqAI TTAA 2 cut(s) 339, 372
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 3 cut(s) 206, 283, 802
ScrFI CCNGG 1 cut(s) 204
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 850
SmlI CTYRAG 3 cut(s) 406, 769, 798
SmoI CTYRAG 3 cut(s) 406, 769, 798
SphI GCATGC 1 cut(s) 89
SsiI CCGC 2 cut(s) 329, 473
SspMI CTAG 1 cut(s) 756
StyD4I CCNGG 1 cut(s) 202
TaqI TCGA 1 cut(s) 177
TfiI GAWTC 6 cut(s) 8, 62, 117, 130, 296, 759
Tru1I TTAA 2 cut(s) 339, 372
Tru9I TTAA 2 cut(s) 339, 372
TscAI CASTG 1 cut(s) 696
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 7 cut(s) 14, 75, 96, 109, 195, 405, 497
TspGWI ACGGA 1 cut(s) 589
TspRI CASTG 1 cut(s) 696
XceI RCATGY 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 1 cut(s) 756
Zsp2I ATGCAT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.