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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3966 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 2162, 2341 |
| Acc36I | ACCTGC | 1 cut(s) | 1144 |
| Acc65I | GGTACC | 1 cut(s) | 300 |
| AccB1I | GGYRCC | 5 cut(s) | 262, 279, 300, 434, 583 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 290, 1342 |
| AccII | CGCG | 2 cut(s) | 1291, 2342 |
| AccIII | TCCGGA | 1 cut(s) | 1612 |
| AciI | CCGC | 5 cut(s) | 669, 879, 1799, 2104, 2663 |
| AclI | AACGTT | 1 cut(s) | 3737 |
| AclWI | GGATC | 7 cut(s) | 683, 2049, 2111, 2735, 2748, 3704, 4108 |
| AcoI | YGGCCR | 3 cut(s) | 880, 1333, 1537 |
| AcsI | RAATTY | 7 cut(s) | 524, 1520, 2177, 2386, 2828, 3147, 3909 |
| AcuI | CTGAAG | 6 cut(s) | 145, 1340, 2421, 2880, 3056, 3840 |
| AcvI | CACGTG | 1 cut(s) | 1535 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 290, 776, 1342, 1388, 1868, 2731, 2971 |
| AflII | CTTAAG | 2 cut(s) | 341, 3811 |
| AjiI | CACGTC | 1 cut(s) | 1957 |
| AjnI | CCWGG | 6 cut(s) | 757, 1276, 1849, 2322, 3703, 3944 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1554, 1586, 1896, 1928 |
| AleI | CACNNNNGTG | 2 cut(s) | 589, 1266 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2263, 2295 |
| Alw21I | GWGCWC | 6 cut(s) | 336, 631, 1723, 3054, 3525, 3654 |
| Alw26I | GTCTC | 6 cut(s) | 890, 959, 2241, 2255, 2394, 2417 |
| Alw44I | GTGCAC | 2 cut(s) | 332, 3650 |
| AlwI | GGATC | 7 cut(s) | 683, 2049, 2111, 2735, 2748, 3704, 4108 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2292, 2993, 3455, 3725 |
| Ama87I | CYCGRG | 1 cut(s) | 2238 |
| Aor13HI | TCCGGA | 1 cut(s) | 1612 |
| ApaI | GGGCCC | 1 cut(s) | 3747 |
| ApaLI | GTGCAC | 2 cut(s) | 332, 3650 |
| ApoI | RAATTY | 7 cut(s) | 524, 1520, 2177, 2386, 2828, 3147, 3909 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 3907, 3939, 4187 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2618 |
| Asp718I | GGTACC | 1 cut(s) | 300 |
| AspLEI | GCGC | 4 cut(s) | 1028, 3756, 3781, 4055 |
| AsuC2I | CCSGG | 8 cut(s) | 69, 81, 172, 180, 1709, 1869, 2595, 2738 |
| AsuHPI | GGTGA | 9 cut(s) | 23, 305, 665, 842, 1253, 1857, 2797, 2860, 4182 |
| AsuII | TTCGAA | 2 cut(s) | 2832, 3913 |
| AvaI | CYCGRG | 1 cut(s) | 2238 |
| AvaII | GGWCC | 3 cut(s) | 91, 831, 2734 |
| BaeGI | GKGCMC | 3 cut(s) | 336, 3654, 3747 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3618, 3651 |
| BalI | TGGCCA | 2 cut(s) | 1335, 1539 |
| BamHI | GGATCC | 1 cut(s) | 2740 |
| BanI | GGYRCC | 5 cut(s) | 262, 279, 300, 434, 583 |
| BanII | GRGCYC | 7 cut(s) | 549, 631, 1723, 1978, 3054, 3525, 3747 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 212, 244, 2871, 2903, 3111, 3143 |
| BauI | CACGAG | 1 cut(s) | 4158 |
| BbrPI | CACGTG | 1 cut(s) | 1535 |
| BbsI | GAAGAC | 4 cut(s) | 713, 1320, 2217, 2868 |
| Bbv12I | GWGCWC | 6 cut(s) | 336, 631, 1723, 3054, 3525, 3654 |
| BccI | CCATC | 9 cut(s) | 666, 854, 919, 1617, 2261, 3070, 3217, 3301, 3521 |
| BceAI | ACGGC | 2 cut(s) | 867, 2102 |
| BciT130I | CCWGG | 6 cut(s) | 759, 1278, 1851, 2324, 3705, 3946 |
| BciVI | GTATCC | 3 cut(s) | 686, 1410, 2890 |
| BclI | TGATCA | 1 cut(s) | 399 |
| BcnI | CCSGG | 8 cut(s) | 69, 81, 172, 180, 1709, 1869, 2595, 2738 |
| BcoDI | GTCTC | 6 cut(s) | 890, 959, 2241, 2255, 2394, 2417 |
| BfaI | CTAG | 4 cut(s) | 968, 2207, 3528, 4071 |
| BfmI | CTRYAG | 3 cut(s) | 1422, 2033, 2985 |
| BfoI | RGCGCY | 1 cut(s) | 3757 |
| BfrI | CTTAAG | 2 cut(s) | 341, 3811 |
| BfuAI | ACCTGC | 1 cut(s) | 1144 |
| BfuI | GTATCC | 3 cut(s) | 686, 1410, 2890 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3751 |
| BglII | AGATCT | 1 cut(s) | 3470 |
| BlpI | GCTNAGC | 4 cut(s) | 200, 1029, 1080, 2652 |
| Bme18I | GGWCC | 3 cut(s) | 91, 831, 2734 |
| BmeT110I | CYCGRG | 1 cut(s) | 2238 |
| BmgBI | CACGTC | 1 cut(s) | 1957 |
| BmrI | ACTGGG | 2 cut(s) | 643, 2960 |
| BmuI | ACTGGG | 2 cut(s) | 643, 2960 |
| BpiI | GAAGAC | 4 cut(s) | 713, 1320, 2217, 2868 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2572, 2604, 2966, 2998 |
| BpmI | CTGGAG | 5 cut(s) | 345, 1764, 1942, 3360, 3747 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2774, 3192 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 200, 1029, 1080, 2652 |
| Bpu14I | TTCGAA | 2 cut(s) | 2832, 3913 |
| BpuEI | CTTGAG | 2 cut(s) | 2899, 3550 |
| BpuMI | CCSGG | 8 cut(s) | 69, 81, 172, 180, 1709, 1869, 2595, 2738 |
| Bsa29I | ATCGAT | 1 cut(s) | 2560 |
| BsaAI | YACGTR | 1 cut(s) | 1535 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1398 |
| BsaI | GGTCTC | 1 cut(s) | 959 |
| BsaWI | WCCGGW | 1 cut(s) | 1612 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2525, 2555, 3316, 3346 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 290, 776, 1342, 1388, 1868, 2731, 2971 |
| Bse3DI | GCAATG | 2 cut(s) | 561, 3260 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1398 |
| BseAI | TCCGGA | 1 cut(s) | 1612 |
| BseBI | CCWGG | 6 cut(s) | 759, 1278, 1851, 2324, 3705, 3946 |
| BseCI | ATCGAT | 1 cut(s) | 2560 |
| BseJI | GATNNNNATC | 1 cut(s) | 1398 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 290, 776, 1342, 1388, 1868, 2731, 2971 |
| BseMI | GCAATG | 2 cut(s) | 561, 3260 |
| BseRI | GAGGAG | 5 cut(s) | 230, 1142, 2990, 3337, 3473 |
| BseSI | GKGCMC | 3 cut(s) | 336, 3654, 3747 |
| BseX3I | CGGCCG | 1 cut(s) | 880 |
| BseYI | CCCAGC | 1 cut(s) | 1971 |
| BsgI | GTGCAG | 3 cut(s) | 190, 726, 3908 |
| Bsh1236I | CGCG | 2 cut(s) | 1291, 2342 |
| Bsh1285I | CGRYCG | 1 cut(s) | 883 |
| BshNI | GGYRCC | 5 cut(s) | 262, 279, 300, 434, 583 |
| BshVI | ATCGAT | 1 cut(s) | 2560 |
| BsiEI | CGRYCG | 1 cut(s) | 883 |
| BsiHKAI | GWGCWC | 6 cut(s) | 336, 631, 1723, 3054, 3525, 3654 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2238 |
| BslFI | GGGAC | 2 cut(s) | 1008, 2720 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 290, 776, 1342, 1388, 1868, 2731, 2971 |
| BsmAI | GTCTC | 6 cut(s) | 890, 959, 2241, 2255, 2394, 2417 |
| BsmBI | CGTCTC | 1 cut(s) | 890 |
| BsmFI | GGGAC | 2 cut(s) | 1008, 2720 |
| BsmI | GAATGC | 4 cut(s) | 1217, 2063, 2312, 2488 |
| Bso31I | GGTCTC | 1 cut(s) | 959 |
| BsoBI | CYCGRG | 1 cut(s) | 2238 |
| Bsp119I | TTCGAA | 2 cut(s) | 2832, 3913 |
| Bsp120I | GGGCCC | 1 cut(s) | 3743 |
| Bsp1286I | GDGCHC | 9 cut(s) | 336, 549, 631, 1723, 1978, 3054, 3525, 3654, 3747 |
| Bsp13I | TCCGGA | 1 cut(s) | 1612 |
| Bsp1407I | TGTACA | 1 cut(s) | 1144 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 200, 1029, 1080, 2652 |
| Bsp19I | CCATGG | 1 cut(s) | 1514 |
| BspACI | CCGC | 5 cut(s) | 669, 879, 1799, 2104, 2663 |
| BspDI | ATCGAT | 1 cut(s) | 2560 |
| BspEI | TCCGGA | 1 cut(s) | 1612 |
| BspFNI | CGCG | 2 cut(s) | 1291, 2342 |
| BspHI | TCATGA | 2 cut(s) | 3546, 4177 |
| BspMAI | CTGCAG | 3 cut(s) | 1426, 2037, 2989 |
| BspMI | ACCTGC | 1 cut(s) | 1144 |
| BspPI | GGATC | 7 cut(s) | 683, 2049, 2111, 2735, 2748, 3704, 4108 |
| BspQI | GCTCTTC | 1 cut(s) | 3816 |
| BspT104I | TTCGAA | 2 cut(s) | 2832, 3913 |
| BspT107I | GGYRCC | 5 cut(s) | 262, 279, 300, 434, 583 |
| BspTI | CTTAAG | 2 cut(s) | 341, 3811 |
| BspTNI | GGTCTC | 1 cut(s) | 959 |
| BsrDI | GCAATG | 2 cut(s) | 561, 3260 |
| BsrGI | TGTACA | 1 cut(s) | 1144 |
| BssSI | CACGAG | 1 cut(s) | 4158 |
| BssT1I | CCWWGG | 4 cut(s) | 422, 1514, 3276, 4117 |
| Bst2BI | CACGAG | 1 cut(s) | 4158 |
| Bst2UI | CCWGG | 6 cut(s) | 759, 1278, 1851, 2324, 3705, 3946 |
| Bst6I | CTCTTC | 3 cut(s) | 2565, 3618, 3816 |
| BstAFI | CTTAAG | 2 cut(s) | 341, 3811 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2058 |
| BstAUI | TGTACA | 1 cut(s) | 1144 |
| BstBAI | YACGTR | 1 cut(s) | 1535 |
| BstBI | TTCGAA | 2 cut(s) | 2832, 3913 |
| BstC8I | GCNNGC | 4 cut(s) | 65, 809, 2658, 3828 |
| BstDSI | CCRYGG | 2 cut(s) | 1514, 3630 |
| BstFNI | CGCG | 2 cut(s) | 1291, 2342 |
| BstH2I | RGCGCY | 1 cut(s) | 3757 |
| BstHHI | GCGC | 4 cut(s) | 1028, 3756, 3781, 4055 |
| BstMAI | GTCTC | 6 cut(s) | 890, 959, 2241, 2255, 2394, 2417 |
| BstMCI | CGRYCG | 1 cut(s) | 883 |
| BstNI | CCWGG | 6 cut(s) | 759, 1278, 1851, 2324, 3705, 3946 |
| BstNSI | RCATGY | 2 cut(s) | 1013, 4109 |
| BstSFI | CTRYAG | 3 cut(s) | 1422, 2033, 2985 |
| BstSLI | GKGCMC | 3 cut(s) | 336, 3654, 3747 |
| BstUI | CGCG | 2 cut(s) | 1291, 2342 |
| BstV2I | GAAGAC | 4 cut(s) | 713, 1320, 2217, 2868 |
| BstX2I | RGATCY | 4 cut(s) | 2041, 2740, 3470, 4113 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 860 |
| BstYI | RGATCY | 4 cut(s) | 2041, 2740, 3470, 4113 |
| BstZI | CGGCCG | 1 cut(s) | 880 |
| Bsu15I | ATCGAT | 1 cut(s) | 2560 |
| BsuI | GTATCC | 3 cut(s) | 686, 1410, 2890 |
| BsuTUI | ATCGAT | 1 cut(s) | 2560 |
| BtgI | CCRYGG | 2 cut(s) | 1514, 3630 |
| BtgZI | GCGATG | 1 cut(s) | 1805 |
| BtrI | CACGTC | 1 cut(s) | 1957 |
| BtsI | GCAGTG | 3 cut(s) | 1837, 2994, 3950 |
| BveI | ACCTGC | 1 cut(s) | 1144 |
| Cac8I | GCNNGC | 4 cut(s) | 65, 809, 2658, 3828 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2292, 2993, 3455, 3725 |
| CciI | TCATGA | 2 cut(s) | 3546, 4177 |
| CfoI | GCGC | 4 cut(s) | 1028, 3756, 3781, 4055 |
| ClaI | ATCGAT | 1 cut(s) | 2560 |
| CseI | GACGC | 3 cut(s) | 1466, 2331, 2873 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4075, 4110 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 2162, 2341 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 2162, 2341 |
| EaeI | YGGCCR | 3 cut(s) | 880, 1333, 1537 |
| EagI | CGGCCG | 1 cut(s) | 880 |
| Eam1104I | CTCTTC | 3 cut(s) | 2565, 3618, 3816 |
| EarI | CTCTTC | 3 cut(s) | 2565, 3618, 3816 |
| EciI | GGCGGA | 1 cut(s) | 2119 |
| Ecl136II | GAGCTC | 4 cut(s) | 629, 1721, 3052, 3523 |
| EclXI | CGGCCG | 1 cut(s) | 880 |
| Eco130I | CCWWGG | 4 cut(s) | 422, 1514, 3276, 4117 |
| Eco24I | GRGCYC | 7 cut(s) | 549, 631, 1723, 1978, 3054, 3525, 3747 |
| Eco31I | GGTCTC | 1 cut(s) | 959 |
| Eco47I | GGWCC | 3 cut(s) | 91, 831, 2734 |
| Eco52I | CGGCCG | 1 cut(s) | 880 |
| Eco53kI | GAGCTC | 4 cut(s) | 629, 1721, 3052, 3523 |
| Eco57I | CTGAAG | 6 cut(s) | 145, 1340, 2421, 2880, 3056, 3840 |
| Eco72I | CACGTG | 1 cut(s) | 1535 |
| Eco88I | CYCGRG | 1 cut(s) | 2238 |
| EcoICRI | GAGCTC | 4 cut(s) | 629, 1721, 3052, 3523 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2734, 3280 |
| EcoRI | GAATTC | 1 cut(s) | 1520 |
| EcoRII | CCWGG | 6 cut(s) | 757, 1276, 1849, 2322, 3703, 3944 |
| EcoT14I | CCWWGG | 4 cut(s) | 422, 1514, 3276, 4117 |
| EcoT22I | ATGCAT | 4 cut(s) | 243, 561, 1653, 2063 |
| EcoT38I | GRGCYC | 7 cut(s) | 549, 631, 1723, 1978, 3054, 3525, 3747 |
| ErhI | CCWWGG | 4 cut(s) | 422, 1514, 3276, 4117 |
| Esp3I | CGTCTC | 1 cut(s) | 890 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1057, 1089, 2606, 2638, 2874, 2906 |
| FaqI | GGGAC | 2 cut(s) | 1008, 2720 |
| FbaI | TGATCA | 1 cut(s) | 399 |
| FriOI | GRGCYC | 7 cut(s) | 549, 631, 1723, 1978, 3054, 3525, 3747 |
| FspBI | CTAG | 4 cut(s) | 968, 2207, 3528, 4071 |
| GlaI | GCGC | 4 cut(s) | 1027, 3755, 3780, 4054 |
| GsaI | CCCAGC | 1 cut(s) | 1975 |
| GsuI | CTGGAG | 5 cut(s) | 345, 1764, 1942, 3360, 3747 |
| HaeII | RGCGCY | 1 cut(s) | 3757 |
| HgaI | GACGC | 3 cut(s) | 1466, 2331, 2873 |
| HhaI | GCGC | 4 cut(s) | 1028, 3756, 3781, 4055 |
| Hin6I | GCGC | 4 cut(s) | 1026, 3754, 3779, 4053 |
| HinP1I | GCGC | 4 cut(s) | 1026, 3754, 3779, 4053 |
| HindIII | AAGCTT | 2 cut(s) | 1595, 3120 |
| HphI | GGTGA | 9 cut(s) | 23, 305, 665, 842, 1253, 1857, 2797, 2860, 4182 |
| Hpy166II | GTNNAC | 5 cut(s) | 334, 1252, 1271, 3534, 3652 |
| Hpy8I | GTNNAC | 5 cut(s) | 334, 1252, 1271, 3534, 3652 |
| Hpy99I | CGWCG | 1 cut(s) | 215 |
| HpyCH4IV | ACGT | 4 cut(s) | 1534, 1956, 3737, 3993 |
| HpySE526I | ACGT | 4 cut(s) | 1534, 1956, 3737, 3993 |
| HspAI | GCGC | 4 cut(s) | 1026, 3754, 3779, 4053 |
| Kpn2I | TCCGGA | 1 cut(s) | 1612 |
| KpnI | GGTACC | 1 cut(s) | 304 |
| Ksp22I | TGATCA | 1 cut(s) | 399 |
| LguI | GCTCTTC | 1 cut(s) | 3816 |
| LmnI | GCTCC | 8 cut(s) | 253, 928, 2716, 2770, 2791, 3049, 3728, 4103 |
| MaeI | CTAG | 4 cut(s) | 968, 2207, 3528, 4071 |
| MaeII | ACGT | 4 cut(s) | 1534, 1956, 3737, 3993 |
| MaeIII | GTNAC | 9 cut(s) | 11, 293, 653, 1577, 1622, 1784, 2194, 3721, 4009 |
| MfeI | CAATTG | 1 cut(s) | 503 |
| MflI | RGATCY | 4 cut(s) | 2041, 2740, 3470, 4113 |
| MhlI | GDGCHC | 9 cut(s) | 336, 549, 631, 1723, 1978, 3054, 3525, 3654, 3747 |
| MlsI | TGGCCA | 2 cut(s) | 1335, 1539 |
| MluNI | TGGCCA | 2 cut(s) | 1335, 1539 |
| MlyI | GAGTC | 4 cut(s) | 1081, 2396, 2462, 3109 |
| Mox20I | TGGCCA | 2 cut(s) | 1335, 1539 |
| Mph1103I | ATGCAT | 4 cut(s) | 243, 561, 1653, 2063 |
| MroI | TCCGGA | 1 cut(s) | 1612 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2618 |
| MscI | TGGCCA | 2 cut(s) | 1335, 1539 |
| MslI | CAYNNNNRTG | 7 cut(s) | 564, 589, 858, 1266, 1656, 2843, 2924 |
| Msp20I | TGGCCA | 2 cut(s) | 1335, 1539 |
| MspA1I | CMGCKG | 5 cut(s) | 204, 323, 1102, 1302, 1421 |
| MspCI | CTTAAG | 2 cut(s) | 341, 3811 |
| MunI | CAATTG | 1 cut(s) | 503 |
| Mva1269I | GAATGC | 4 cut(s) | 1217, 2063, 2312, 2488 |
| MvaI | CCWGG | 6 cut(s) | 759, 1278, 1851, 2324, 3705, 3946 |
| MvnI | CGCG | 2 cut(s) | 1291, 2342 |
| NciI | CCSGG | 8 cut(s) | 69, 81, 172, 180, 1709, 1869, 2595, 2738 |
| NcoI | CCATGG | 1 cut(s) | 1514 |
| NmeAIII | GCCGAG | 2 cut(s) | 463, 2755 |
| NmuCI | GTSAC | 7 cut(s) | 11, 293, 653, 1577, 1622, 3721, 4009 |
| NsiI | ATGCAT | 4 cut(s) | 243, 561, 1653, 2063 |
| NspI | RCATGY | 2 cut(s) | 1013, 4109 |
| NspV | TTCGAA | 2 cut(s) | 2832, 3913 |
| OliI | CACNNNNGTG | 2 cut(s) | 589, 1266 |
| PagI | TCATGA | 2 cut(s) | 3546, 4177 |
| PciSI | GCTCTTC | 1 cut(s) | 3816 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3919 |
| PctI | GAATGC | 4 cut(s) | 1217, 2063, 2312, 2488 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2618 |
| PfeI | GAWTC | 7 cut(s) | 964, 1441, 1474, 2230, 2442, 2467, 2519 |
| PflFI | GACNNNGTC | 1 cut(s) | 1958 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 290, 1342 |
| PfoI | TCCNGGA | 2 cut(s) | 757, 2736 |
| PleI | GAGTC | 4 cut(s) | 1081, 2396, 2461, 3108 |
| PmaCI | CACGTG | 1 cut(s) | 1535 |
| PmlI | CACGTG | 1 cut(s) | 1535 |
| PpsI | GAGTC | 4 cut(s) | 1081, 2396, 2461, 3108 |
| Ppu21I | YACGTR | 1 cut(s) | 1535 |
| PpuMI | RGGWCCY | 1 cut(s) | 2734 |
| PsiI | TTATAA | 1 cut(s) | 3966 |
| Psp124BI | GAGCTC | 4 cut(s) | 631, 1723, 3054, 3525 |
| Psp1406I | AACGTT | 1 cut(s) | 3737 |
| Psp5II | RGGWCCY | 1 cut(s) | 2734 |
| Psp6I | CCWGG | 6 cut(s) | 757, 1276, 1849, 2322, 3703, 3944 |
| PspCI | CACGTG | 1 cut(s) | 1535 |
| PspFI | CCCAGC | 1 cut(s) | 1971 |
| PspGI | CCWGG | 6 cut(s) | 757, 1276, 1849, 2322, 3703, 3944 |
| PspOMI | GGGCCC | 1 cut(s) | 3743 |
| PspPPI | RGGWCCY | 1 cut(s) | 2734 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2187, 2219, 3987, 4019 |
| PstI | CTGCAG | 3 cut(s) | 1426, 2037, 2989 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2292, 2993, 3455, 3725 |
| PsuI | RGATCY | 4 cut(s) | 2041, 2740, 3470, 4113 |
| PsyI | GACNNNGTC | 1 cut(s) | 1958 |
| PvuII | CAGCTG | 5 cut(s) | 204, 323, 1102, 1302, 1421 |
| RseI | CAYNNNNRTG | 7 cut(s) | 564, 589, 858, 1266, 1656, 2843, 2924 |
| SacI | GAGCTC | 4 cut(s) | 631, 1723, 3054, 3525 |
| SapI | GCTCTTC | 1 cut(s) | 3816 |
| SchI | GAGTC | 4 cut(s) | 1081, 2396, 2462, 3109 |
| SduI | GDGCHC | 9 cut(s) | 336, 549, 631, 1723, 1978, 3054, 3525, 3654, 3747 |
| SfcI | CTRYAG | 3 cut(s) | 1422, 2033, 2985 |
| SfuI | TTCGAA | 2 cut(s) | 2832, 3913 |
| SinI | GGWCC | 3 cut(s) | 91, 831, 2734 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 564, 589, 858, 1266, 1656, 2843, 2924 |
| SmlI | CTYRAG | 4 cut(s) | 341, 2914, 3565, 3811 |
| SmoI | CTYRAG | 4 cut(s) | 341, 2914, 3565, 3811 |
| SsiI | CCGC | 5 cut(s) | 669, 879, 1799, 2104, 2663 |
| SspI | AATATT | 3 cut(s) | 493, 1738, 4198 |
| SspMI | CTAG | 4 cut(s) | 968, 2207, 3528, 4071 |
| SstI | GAGCTC | 4 cut(s) | 631, 1723, 3054, 3525 |
| StyI | CCWWGG | 4 cut(s) | 422, 1514, 3276, 4117 |
| TaiI | ACGT | 4 cut(s) | 1537, 1959, 3740, 3996 |
| TaqII | GACCGA | 1 cut(s) | 3487 |
| TatI | WGTACW | 7 cut(s) | 228, 1144, 1304, 1464, 1585, 2751, 2887 |
| TauI | GCSGC | 3 cut(s) | 882, 1802, 2666 |
| TfiI | GAWTC | 7 cut(s) | 964, 1441, 1474, 2230, 2442, 2467, 2519 |
| TseFI | GTSAC | 7 cut(s) | 11, 293, 653, 1577, 1622, 3721, 4009 |
| Tsp45I | GTSAC | 7 cut(s) | 11, 293, 653, 1577, 1622, 3721, 4009 |
| TspGWI | ACGGA | 3 cut(s) | 3702, 3752, 3911 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1958 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 290, 1342 |
| Vha464I | CTTAAG | 2 cut(s) | 341, 3811 |
| VneI | GTGCAC | 2 cut(s) | 332, 3650 |
| VpaK11BI | GGWCC | 3 cut(s) | 91, 831, 2734 |
| XapI | RAATTY | 7 cut(s) | 524, 1520, 2177, 2386, 2828, 3147, 3909 |
| XbaI | TCTAGA | 2 cut(s) | 967, 2206 |
| XceI | RCATGY | 2 cut(s) | 1013, 4109 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1512 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2618 |
| XspI | CTAG | 4 cut(s) | 968, 2207, 3528, 4071 |
| Zsp2I | ATGCAT | 4 cut(s) | 243, 561, 1653, 2063 |