Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002028

Physical Location & Seq

Genomic Coordinates Forward (+)

2492260 .. 2495959

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGCAATCGGATAATGGAAAGCTTTTCATCGGTGGGATATCTTGGGACACCAATGAGGAACGTCTCAAGGAGTATTTCAGCAGTTTTGGAGAAGTGATCGAAGCTGTCATCTTGAAAGATCGTACCACTGGTCGTGCTCGTGGTTTCGGTTTTGTTGTTTTTGCTGATCCTGCTGTTGCTGAGATTGTTATCACCGAAAAACATAATATTGATGGCAGATTGGTTGAAGCCAAGAAAGCTGTTCCCAGAGATGACCAAAACATGGTAAATAGAAGCAACAGCAGTAGCATCCAAGGTTCTCCCGGTGGTCCAGGTCGCACAAGGAAGATATTTGTTGGAGGATTACCTTCTTCGGTTACAGAGAGTGATTTCAAGACGTATTTTGAGCAGTTTGGTACAACTACGGATGTGGTTGTCATGTATGATCACAACACACAAAGGCCTAGAGGTTTCGGGTTTATAACCTACGATTCCGAGGAGGCGGTTGAAAAGGTATTGCTCAAGACATTCCATGAACTAAATGGTAAAATGGTTGAGGTTAAGCGAGCTGTTCCAAAGGAGTTATCTCCAGGTCCAAGTCGCAGTCCTCTTGGTGCAGGTTACAGCTATGGAGTTAATAGGGTCAATAACCTCCTTAATGGGTATGCTCAAGGGTTTAATCCCGCTGCAGTTGGAGGCTACGGACTTAGGATGGATGGTCGGTTCAGTCCGGTTGGTGCTGGAAGAAGCGGGTTTGCAAATTACAGTTCTGGATACGGGATGAATGTGAACTTTGATCAGGGATTGCCCACAGGGTTCACGGGAGGTACAAATTACAATGGAAATGTTGACTATGGCCGAGGAATGAGCCCGTACTACATTGGTAACACAAACAGGTTTGGTCCTGCGGTTGGCTATGAAGGGGGCAACGGAGGAGGAAACTCATCCTTCTTCAGTTCGGTTACACGGAACTTATGGGGAAACAATGGTGGTCTTAACTATAACAACAATAATACAAACTCAAACTCCAATACATATATGGGAGGATCATCAAGTGGGAACAACACACTTAGTGGTCCATTTGGAAATTCAGGAGTCAATTGGGGTGCTCCTGGAGGAGGAAACAATGCTGTGAGTAACGAGAATGTGAAGTTTGGTTATGGAGGAAACGGTGAATCTGGTTTTGGGTTGGGAACAGGTGGTTATGCAGCAAGAAACCCAGGGGCTAACAAGGCAGCACCATCCTCTTCATTCTCTTCTGCCTCAGCAACCAACAACACGGGTTATGATACAGCAGGACTTGCAGAGTTTTACGGGAATGGTGCAGTTTATAGTGACCCTACATGGAGATCACCAACTCCTGAGACAGAAGGGCCTGCTCCTTTTAGCTATGGGATTGGAGGAGGGGTTCCTTCTTCAGATGTTTCAGCTAGAAGTTCATCTCCAGGTTATGTTGGCAGTTACAGTGTGAACAAGAGACAACCAAACAGAGGAATTGCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

494

Amino Acids

51.87

Weight (kDa)

8.42

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	8 - 69	4.9e-15	RNA recognition motif
RRM_7	PF16367	108 - 178	1.3e-07	RNA recognition motif
RRM_1	PF00076	110 - 167	1.5e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07810 AT3G07810
fragaria_vesca	FvH4_6g41280 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320
malus_domestica	MD09G1120600.v1.1 MD09G1121100.v1.1 MD17G1111500.v1.1 MD17G1112100.v1.1
prunus_persica	Prupe.3G202600_v2.0.a1 Prupe.3G202600_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1
pyrus_communis	pycom09g04550 pycom17g10350 pycom17g10380
rosa_chinensis	RchiOBHm_Chr2g0156821 RchiOBHm_Chr2g0156871
rosa_laevigata	RLG00000020945 RLG00000020948
rosa_multiflora	Rmu_co8440963.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092640 Rroxscaffold_2G00092680
rosa_rugosa	Rorug02G0456400 Rorug02G0456500 Rorug02G0456800 Rorug02G0456800 Rorug02G0456800 Rorug02G0456900 Rorug02G0456900 Rorug02G0456900
rosa_samantha	Rh2AG522100 Rh2AG522400 Rh2BG535500 Rh2BG535700 Rh2CG507000 Rh2CG507300 Rh2DG544500 Rh2DG544700
rosa_wichuraiana	Rw2G043110 Rw2G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	262
AciI	CCGC	4 cut(s)	482, 663, 729, 887
AclWI	GGATC	2 cut(s)	161, 1033
AcoI	YGGCCR	1 cut(s)	835
AcsI	RAATTY	1 cut(s)	1066
AcuI	CTGAAG	2 cut(s)	916, 1380
AdeI	CACNNNGTG	1 cut(s)	1052
AfaI	GTAC	4 cut(s)	124, 397, 808, 854
AfiI	CCNNNNNNNGG	4 cut(s)	262, 890, 1097, 1469
AgsI	TTSAA	4 cut(s)	115, 227, 373, 488
AjnI	CCWGG	5 cut(s)	310, 568, 1090, 1198, 1423
AjuI	GAANNNNNNNTTGG	2 cut(s)	1146, 1178
AloI	GAACNNNNNNTCC	4 cut(s)	686, 718, 1371, 1403
AluBI	AGCT	7 cut(s)	22, 104, 239, 548, 606, 1368, 1409
AluI	AGCT	7 cut(s)	22, 104, 239, 548, 606, 1368, 1409
Alw21I	GWGCWC	2 cut(s)	139, 1090
Alw26I	GTCTC	3 cut(s)	68, 1337, 1450
AlwI	GGATC	2 cut(s)	161, 1033
AoxI	GGCC	3 cut(s)	440, 835, 1352
ApeKI	GCWGC	3 cut(s)	665, 1187, 1214
ApoI	RAATTY	1 cut(s)	1066
AspS9I	GGNCC	5 cut(s)	308, 572, 881, 1055, 1352
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	3 cut(s)	184, 1163, 1323
AvaII	GGWCC	4 cut(s)	308, 572, 881, 1055
BanII	GRGCYC	1 cut(s)	851
BauI	CACGAG	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	139, 1090
BbvCI	CCTCAGC	1 cut(s)	1243
BbvI	GCAGC	3 cut(s)	652, 1199, 1226
BccI	CCATC	4 cut(s)	206, 685, 689, 1228
BciT130I	CCWGG	5 cut(s)	312, 570, 1092, 1200, 1425
BciVI	GTATCC	1 cut(s)	746
BclI	TGATCA	2 cut(s)	424, 775
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	3 cut(s)	68, 1337, 1450
BfaI	CTAG	2 cut(s)	444, 1410
BfmI	CTRYAG	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	746
BisI	GCNGC	3 cut(s)	666, 1188, 1215
BlsI	GCNGC	3 cut(s)	667, 1189, 1216
Bme1390I	CCNGG	6 cut(s)	303, 312, 570, 1092, 1200, 1425
Bme18I	GGWCC	4 cut(s)	308, 572, 881, 1055
BmgT120I	GGNCC	5 cut(s)	308, 572, 881, 1055, 1352
BmiI	GGNNCC	1 cut(s)	1389
BmrFI	CCNGG	6 cut(s)	303, 312, 570, 1092, 1200, 1425
BmsI	GCATC	1 cut(s)	297
BpmI	CTGGAG	3 cut(s)	552, 1113, 1407
Bpu10I	CCTNAGC	1 cut(s)	1243
BpuEI	CTTGAG	3 cut(s)	50, 485, 633
BpuMI	CCSGG	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	5 cut(s)	292, 474, 838, 1198, 1199
BsaWI	WCCGGW	1 cut(s)	709
BsaXI	ACNNNNNCTCC	4 cut(s)	989, 1019, 1371, 1401
Bsc4I	CCNNNNNNNGG	4 cut(s)	262, 890, 1097, 1469
Bse1I	ACTGG	1 cut(s)	133
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	5 cut(s)	312, 570, 1092, 1200, 1425
BseDI	CCNNGG	5 cut(s)	292, 474, 838, 1198, 1199
BseGI	GGATG	7 cut(s)	288, 412, 696, 700, 765, 923, 1220
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	4 cut(s)	262, 890, 1097, 1469
BseMII	CTCAG	3 cut(s)	171, 1257, 1332
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	4 cut(s)	491, 927, 1110, 1395
BseXI	GCAGC	3 cut(s)	652, 1199, 1226
BsgI	GTGCAG	2 cut(s)	615, 1323
BshFI	GGCC	3 cut(s)	442, 837, 1354
BsiHKAI	GWGCWC	2 cut(s)	139, 1090
BsiSI	CCGG	2 cut(s)	303, 710
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	4 cut(s)	262, 890, 1097, 1469
BsmAI	GTCTC	3 cut(s)	68, 1337, 1450
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	3 cut(s)	442, 837, 1354
Bsp1286I	GDGCHC	3 cut(s)	139, 851, 1090
Bsp143I	GATC	7 cut(s)	96, 118, 166, 424, 775, 1025, 1328
BspACI	CCGC	4 cut(s)	482, 663, 729, 887
BspANI	GGCC	3 cut(s)	442, 837, 1354
BspCNI	CTCAG	3 cut(s)	172, 1256, 1333
BspLI	GGNNCC	1 cut(s)	1389
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	1 cut(s)	587
BspPI	GGATC	2 cut(s)	161, 1033
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	5 cut(s)	292, 474, 838, 1198, 1199
BssMI	GATC	7 cut(s)	96, 118, 166, 424, 775, 1025, 1328
BssSI	CACGAG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	292
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	5 cut(s)	312, 570, 1092, 1200, 1425
Bst4CI	ACNGT	3 cut(s)	746, 1151, 1445
Bst6I	CTCTTC	2 cut(s)	1231, 1240
BstAPI	GCANNNNNTGC	1 cut(s)	1280
BstC8I	GCNNGC	2 cut(s)	546, 1356
BstDEI	CTNAG	6 cut(s)	180, 686, 1049, 1243, 1341, 1482
BstENI	CCTNNNNNAGG	1 cut(s)	1095
BstF5I	GGATG	7 cut(s)	288, 412, 696, 700, 765, 923, 1220
BstKTI	GATC	7 cut(s)	99, 121, 169, 427, 778, 1028, 1331
BstMAI	GTCTC	3 cut(s)	68, 1337, 1450
BstMBI	GATC	7 cut(s)	96, 118, 166, 424, 775, 1025, 1328
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 236, 1211, 1280
BstNI	CCWGG	5 cut(s)	312, 570, 1092, 1200, 1425
BstSCI	CCNGG	6 cut(s)	301, 310, 568, 1090, 1198, 1423
BstSFI	CTRYAG	1 cut(s)	666
BstV1I	GCAGC	3 cut(s)	652, 1199, 1226
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	3 cut(s)	442, 837, 1354
BtsCI	GGATG	7 cut(s)	288, 412, 696, 700, 765, 923, 1220
BtsIMutI	CAGTG	2 cut(s)	126, 1450
BveI	ACCTGC	1 cut(s)	587
Cac8I	GCNNGC	2 cut(s)	546, 1356
Cfr13I	GGNCC	5 cut(s)	308, 572, 881, 1055, 1352
Csp6I	GTAC	4 cut(s)	123, 396, 807, 853
CviAII	CATG	4 cut(s)	262, 418, 512, 1323
CviQI	GTAC	4 cut(s)	123, 396, 807, 853
DdeI	CTNAG	6 cut(s)	180, 686, 1049, 1243, 1341, 1482
DpnI	GATC	7 cut(s)	98, 120, 168, 426, 777, 1027, 1330
DpnII	GATC	7 cut(s)	96, 118, 166, 424, 775, 1025, 1328
DraIII	CACNNNGTG	1 cut(s)	1052
EaeI	YGGCCR	1 cut(s)	835
Eam1104I	CTCTTC	2 cut(s)	1231, 1240
EarI	CTCTTC	2 cut(s)	1231, 1240
Eco130I	CCWWGG	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	851
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	4 cut(s)	308, 572, 881, 1055
Eco57I	CTGAAG	2 cut(s)	916, 1380
EcoNI	CCTNNNNNAGG	1 cut(s)	1095
EcoO109I	RGGNCCY	1 cut(s)	1352
EcoRII	CCWGG	5 cut(s)	310, 568, 1090, 1198, 1423
EcoRV	GATATC	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	851
ErhI	CCWWGG	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	4 cut(s)	265, 421, 515, 1326
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	4 cut(s)	261, 417, 511, 1322
FauI	CCCGC	2 cut(s)	670, 722
FbaI	TGATCA	2 cut(s)	424, 775
Fnu4HI	GCNGC	3 cut(s)	666, 1188, 1215
FokI	GGATG	7 cut(s)	275, 419, 703, 707, 772, 910, 1207
FriOI	GRGCYC	1 cut(s)	851
Fsp4HI	GCNGC	3 cut(s)	666, 1188, 1215
FspBI	CTAG	2 cut(s)	444, 1410
GluI	GCNGC	3 cut(s)	666, 1188, 1215
GsuI	CTGGAG	3 cut(s)	552, 1113, 1407
HaeIII	GGCC	3 cut(s)	442, 837, 1354
HapII	CCGG	2 cut(s)	303, 710
Hin1II	CATG	4 cut(s)	265, 421, 515, 1326
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	470, 1074, 1154
HpaII	CCGG	2 cut(s)	303, 710
HphI	GGTGA	3 cut(s)	184, 1163, 1323
Hpy166II	GTNNAC	4 cut(s)	769, 798, 829, 1450
Hpy188I	TCNGA	3 cut(s)	10, 475, 1399
Hpy188III	TCNNGA	6 cut(s)	112, 373, 502, 750, 1071, 1340
Hpy8I	GTNNAC	4 cut(s)	769, 798, 829, 1450
HpyAV	CCTTC	5 cut(s)	357, 893, 937, 1343, 1401
HpyCH4III	ACNGT	3 cut(s)	746, 1151, 1445
HpyCH4IV	ACGT	2 cut(s)	61, 377
HpyCH4V	TGCA	7 cut(s)	4, 596, 668, 737, 1187, 1283, 1304
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 236, 1211, 1280
HpyF3I	CTNAG	6 cut(s)	180, 686, 1049, 1243, 1341, 1482
HpySE526I	ACGT	2 cut(s)	61, 377
Hsp92II	CATG	4 cut(s)	265, 421, 515, 1326
Ksp22I	TGATCA	2 cut(s)	424, 775
Kzo9I	GATC	7 cut(s)	96, 118, 166, 424, 775, 1025, 1328
LmnI	GCTCC	2 cut(s)	1093, 1363
Lsp1109I	GCAGC	3 cut(s)	652, 1199, 1226
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	2 cut(s)	444, 1410
MaeII	ACGT	2 cut(s)	61, 377
MaeIII	GTNAC	7 cut(s)	355, 599, 863, 940, 1115, 1313, 1439
MalI	GATC	7 cut(s)	98, 120, 168, 426, 777, 1027, 1330
MboI	GATC	7 cut(s)	96, 118, 166, 424, 775, 1025, 1328
MboII	GAAGA	7 cut(s)	337, 342, 735, 922, 1218, 1227, 1386
MfeI	CAATTG	1 cut(s)	1078
MhlI	GDGCHC	3 cut(s)	139, 851, 1090
MluCI	AATT	5 cut(s)	739, 811, 1066, 1078, 1473
MlyI	GAGTC	1 cut(s)	1083
MmeI	TCCRAC	2 cut(s)	316, 652
MseI	TTAA	5 cut(s)	540, 615, 636, 657, 975
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	2 cut(s)	303, 710
MspR9I	CCNGG	6 cut(s)	303, 312, 570, 1092, 1200, 1425
MunI	CAATTG	1 cut(s)	1078
MvaI	CCWGG	5 cut(s)	312, 570, 1092, 1200, 1425
MwoI	GCNNNNNNNGC	4 cut(s)	170, 236, 1211, 1280
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	7 cut(s)	96, 118, 166, 424, 775, 1025, 1328
NlaIII	CATG	4 cut(s)	265, 421, 515, 1326
NlaIV	GGNNCC	1 cut(s)	1389
NmeAIII	GCCGAG	1 cut(s)	863
NmuCI	GTSAC	1 cut(s)	1313
PasI	CCCWGGG	1 cut(s)	1199
PceI	AGGCCT	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	470, 1154
PflMI	CCANNNNNTGG	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	1090
PkrI	GCNGC	3 cut(s)	667, 1189, 1216
PleI	GAGTC	1 cut(s)	1082
PpsI	GAGTC	1 cut(s)	1082
PsiI	TTATAA	1 cut(s)	461
Psp6I	CCWGG	5 cut(s)	310, 568, 1090, 1198, 1423
PspGI	CCWGG	5 cut(s)	310, 568, 1090, 1198, 1423
PspN4I	GGNNCC	1 cut(s)	1389
PspPI	GGNCC	5 cut(s)	308, 572, 881, 1055, 1352
PstI	CTGCAG	1 cut(s)	670
RsaI	GTAC	4 cut(s)	124, 397, 808, 854
RsaNI	GTAC	4 cut(s)	123, 396, 807, 853
SaqAI	TTAA	5 cut(s)	540, 615, 636, 657, 975
SatI	GCNGC	3 cut(s)	666, 1188, 1215
Sau3AI	GATC	7 cut(s)	96, 118, 166, 424, 775, 1025, 1328
Sau96I	GGNCC	5 cut(s)	308, 572, 881, 1055, 1352
SchI	GAGTC	1 cut(s)	1083
ScrFI	CCNGG	6 cut(s)	303, 312, 570, 1092, 1200, 1425
SduI	GDGCHC	3 cut(s)	139, 851, 1090
SfaNI	GCATC	1 cut(s)	297
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	4 cut(s)	308, 572, 881, 1055
SmlI	CTYRAG	3 cut(s)	65, 500, 648
SmoI	CTYRAG	3 cut(s)	65, 500, 648
Sse9I	AATT	5 cut(s)	739, 811, 1066, 1078, 1473
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	4 cut(s)	482, 663, 729, 887
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	2 cut(s)	444, 1410
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	6 cut(s)	301, 310, 568, 1090, 1198, 1423
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	3 cut(s)	746, 1151, 1445
TaiI	ACGT	2 cut(s)	64, 380
TaqI	TCGA	1 cut(s)	99
TasI	AATT	5 cut(s)	739, 811, 1066, 1078, 1473
TfiI	GAWTC	2 cut(s)	470, 1154
Tru1I	TTAA	5 cut(s)	540, 615, 636, 657, 975
Tru9I	TTAA	5 cut(s)	540, 615, 636, 657, 975
TscAI	CASTG	2 cut(s)	133, 1450
TseFI	GTSAC	1 cut(s)	1313
TseI	GCWGC	3 cut(s)	665, 1187, 1214
Tsp45I	GTSAC	1 cut(s)	1313
TspDTI	ATGAA	6 cut(s)	16, 528, 776, 912, 1218, 1407
TspGWI	ACGGA	4 cut(s)	419, 696, 924, 961
TspRI	CASTG	2 cut(s)	133, 1450
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	4 cut(s)	308, 572, 881, 1055
XagI	CCTNNNNNAGG	1 cut(s)	1095
XapI	RAATTY	1 cut(s)	1066
XcmI	CCANNNNNNNNNTGG	2 cut(s)	518, 1015
XspI	CTAG	2 cut(s)	444, 1410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.