Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8440963.1

Orthogroup ID

OG0002028

Physical Location & Seq

Genomic Coordinates Reverse (-)

53 .. 1075

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8440963.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atgtatgatcacaacacccagaggccgagaggcttcggattcatcacttatgattcagaggaagcagtggacaaggttttgctaaagacatttcatgaactgaatgggaagatggttgaggtcaagcgtgcagttccaaaagagttatcacccggtcccagtcgcagccctcttggtggatacaattatggtctgagtagggtcaataacttccttactggctatactcaggggtataatccaagtacggttggaggttatggacttggtaggttcagtccagttgctggtggtcgaagtggatttcctccatttggttctggttatggaatgggaatgaactttgagccagggttgagcccaagttttggaggaaatgcaaattttaataataatgtgagctatggacggggattgagcccttattatatcaataattcaaataggtttagcaatcccattggatatgatggtaataatggaggaagctcatccttttttagctcagtgactcggaatttgtggggtaatgggggtcttaatacaaattctgcaaattccagtgcttacatgggttcaggaagtggtagcattggaggaagtacatttggcaatgctggagttaattggcgttcttcagcaatttcacctcaaggtggaggaaataatgtctctaacaatagtgggacacttggctatggagctggtgataacagttatggcttgggaaccggagggtatggaagaaacagtggtgcaactgtgggccctacatcttcttttgctgcatcaaatggtggttttgagggctcctttactgacttctacagtagtggttcagtgtacggagatcctacttggagatcatcaaattctgagcgagatgggtctggcccctttgggtatgggcttggcagtgcagcttctgatgtttcagctaaaagttctcctggttatgttggtggttatagtgttaataagagacagccgaatacaggtaagagccactttgttaatatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

340

Amino Acids

35.11

Weight (kDa)

9.32

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07810 AT3G07810
fragaria_vesca	FvH4_6g41280 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320
malus_domestica	MD09G1120600.v1.1 MD09G1121100.v1.1 MD17G1111500.v1.1 MD17G1112100.v1.1
prunus_persica	Prupe.3G202600_v2.0.a1 Prupe.3G202600_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1
pyrus_communis	pycom09g04550 pycom17g10350 pycom17g10380
rosa_chinensis	RchiOBHm_Chr2g0156821 RchiOBHm_Chr2g0156871
rosa_laevigata	RLG00000020945 RLG00000020948
rosa_multiflora	Rmu_co8440963.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092640 Rroxscaffold_2G00092680
rosa_rugosa	Rorug02G0456400 Rorug02G0456500 Rorug02G0456800 Rorug02G0456800 Rorug02G0456800 Rorug02G0456900 Rorug02G0456900 Rorug02G0456900
rosa_samantha	Rh2AG522100 Rh2AG522400 Rh2BG535500 Rh2BG535700 Rh2CG507000 Rh2CG507300 Rh2DG544500 Rh2DG544700
rosa_wichuraiana	Rw2G043110 Rw2G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	287, 368
AclWI	GGATC	1 cut(s)	845
AcsI	RAATTY	5 cut(s)	382, 517, 547, 556, 871
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	3 cut(s)	247, 604, 845
AfiI	CCNNNNNNNGG	6 cut(s)	176, 287, 314, 368, 656, 995
AgsI	TTSAA	1 cut(s)	441
AjnI	CCWGG	2 cut(s)	349, 949
AluBI	AGCT	6 cut(s)	402, 489, 504, 704, 923, 938
AluI	AGCT	6 cut(s)	402, 489, 504, 704, 923, 938
Alw26I	GTCTC	2 cut(s)	676, 976
AlwI	GGATC	1 cut(s)	845
AlwNI	CAGNNNCTG	2 cut(s)	287, 926
AoxI	GGCC	3 cut(s)	23, 766, 892
ApaI	GGGCCC	1 cut(s)	770
ApeKI	GCWGC	3 cut(s)	165, 785, 920
ApoI	RAATTY	5 cut(s)	382, 517, 547, 556, 871
ArsI	GACNNNNNNTTYG	2 cut(s)	502, 534
AspS9I	GGNCC	4 cut(s)	155, 766, 767, 893
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	3 cut(s)	141, 639, 719
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	770
BanII	GRGCYC	4 cut(s)	362, 422, 770, 812
BbvI	GCAGC	3 cut(s)	177, 772, 932
BccI	CCATC	3 cut(s)	106, 464, 878
BciT130I	CCWGG	2 cut(s)	351, 951
BciVI	GTATCC	1 cut(s)	173
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	676, 976
BfmI	CTRYAG	1 cut(s)	826
BfuI	GTATCC	1 cut(s)	173
BisI	GCNGC	3 cut(s)	166, 786, 921
BlsI	GCNGC	3 cut(s)	167, 787, 922
Bme1390I	CCNGG	3 cut(s)	153, 351, 951
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	4 cut(s)	155, 766, 767, 893
BmiI	GGNNCC	5 cut(s)	157, 730, 768, 811, 895
BmrFI	CCNGG	3 cut(s)	153, 351, 951
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	797
BmuI	ACTGGG	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	636
BpuMI	CCSGG	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	6 cut(s)	176, 287, 314, 368, 656, 995
Bse1I	ACTGG	4 cut(s)	159, 223, 281, 561
Bse3DI	GCAATG	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	351, 951
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	1 cut(s)	491
BseLI	CCNNNNNNNGG	6 cut(s)	176, 287, 314, 368, 656, 995
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	4 cut(s)	185, 242, 519, 867
BseNI	ACTGG	4 cut(s)	159, 223, 281, 561
BseSI	GKGCMC	1 cut(s)	770
BseXI	GCAGC	3 cut(s)	177, 772, 932
BsgI	GTGCAG	2 cut(s)	150, 939
BshFI	GGCC	3 cut(s)	25, 768, 894
BsiSI	CCGG	2 cut(s)	153, 732
BslFI	GGGAC	2 cut(s)	141, 700
BslI	CCNNNNNNNGG	6 cut(s)	176, 287, 314, 368, 656, 995
BsmAI	GTCTC	2 cut(s)	676, 976
BsmFI	GGGAC	2 cut(s)	141, 700
BsnI	GGCC	3 cut(s)	25, 768, 894
Bsp120I	GGGCCC	1 cut(s)	766
Bsp1286I	GDGCHC	4 cut(s)	362, 422, 770, 812
Bsp143I	GATC	3 cut(s)	7, 850, 863
BspANI	GGCC	3 cut(s)	25, 768, 894
BspCNI	CTCAG	4 cut(s)	186, 241, 518, 868
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	5 cut(s)	157, 730, 768, 811, 895
BspPI	GGATC	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	619
BsrI	ACTGG	4 cut(s)	159, 223, 281, 561
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	3 cut(s)	7, 850, 863
Bst2UI	CCWGG	2 cut(s)	351, 951
Bst4CI	ACNGT	5 cut(s)	250, 716, 752, 763, 830
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	4 cut(s)	194, 228, 505, 876
BstF5I	GGATG	1 cut(s)	491
BstKTI	GATC	3 cut(s)	10, 853, 866
BstMAI	GTCTC	2 cut(s)	676, 976
BstMBI	GATC	3 cut(s)	7, 850, 863
BstNI	CCWGG	2 cut(s)	351, 951
BstSCI	CCNGG	3 cut(s)	151, 349, 949
BstSFI	CTRYAG	1 cut(s)	826
BstSLI	GKGCMC	1 cut(s)	770
BstV1I	GCAGC	3 cut(s)	177, 772, 932
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	25, 768, 894
BtsCI	GGATG	1 cut(s)	491
BtsI	GCAGTG	2 cut(s)	72, 922
BtsIMutI	CAGTG	6 cut(s)	72, 513, 568, 757, 846, 922
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	2 cut(s)	287, 926
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	4 cut(s)	155, 766, 767, 893
Csp6I	GTAC	3 cut(s)	246, 603, 844
CviAII	CATG	2 cut(s)	95, 571
CviQI	GTAC	3 cut(s)	246, 603, 844
DdeI	CTNAG	4 cut(s)	194, 228, 505, 876
DpnI	GATC	3 cut(s)	9, 852, 865
DpnII	GATC	3 cut(s)	7, 850, 863
Eco24I	GRGCYC	4 cut(s)	362, 422, 770, 812
Eco47I	GGWCC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	767
EcoRII	CCWGG	2 cut(s)	349, 949
EcoT38I	GRGCYC	4 cut(s)	362, 422, 770, 812
FaeI	CATG	2 cut(s)	98, 574
FalI	AAGNNNNNCTT	1 cut(s)	992
FaqI	GGGAC	2 cut(s)	141, 700
FatI	CATG	2 cut(s)	94, 570
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	3 cut(s)	166, 786, 921
FokI	GGATG	1 cut(s)	478
FriOI	GRGCYC	4 cut(s)	362, 422, 770, 812
Fsp4HI	GCNGC	3 cut(s)	166, 786, 921
GluI	GCNGC	3 cut(s)	166, 786, 921
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	3 cut(s)	25, 768, 894
HapII	CCGG	2 cut(s)	153, 732
Hin1II	CATG	2 cut(s)	98, 574
HinfI	GANTC	3 cut(s)	39, 53, 511
HpaII	CCGG	2 cut(s)	153, 732
HphI	GGTGA	3 cut(s)	141, 639, 719
Hpy166II	GTNNAC	2 cut(s)	70, 844
Hpy188I	TCNGA	6 cut(s)	38, 58, 195, 516, 877, 928
Hpy188III	TCNNGA	2 cut(s)	95, 579
Hpy8I	GTNNAC	2 cut(s)	70, 844
HpyCH4III	ACNGT	5 cut(s)	250, 716, 752, 763, 830
HpyCH4V	TGCA	6 cut(s)	131, 380, 554, 758, 788, 920
HpyF3I	CTNAG	4 cut(s)	194, 228, 505, 876
Hsp92II	CATG	2 cut(s)	98, 574
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 850, 863
LmnI	GCTCC	2 cut(s)	701, 815
Lsp1109I	GCAGC	3 cut(s)	177, 772, 932
LweI	GCATC	1 cut(s)	797
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	3 cut(s)	9, 852, 865
MboI	GATC	3 cut(s)	7, 850, 863
MboII	GAAGA	4 cut(s)	121, 627, 756, 768
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	4 cut(s)	362, 422, 770, 812
MluCI	AATT	9 cut(s)	184, 382, 436, 517, 547, 556, 625, 642, 871
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	232
MseI	TTAA	5 cut(s)	387, 540, 624, 975, 1014
MspI	CCGG	2 cut(s)	153, 732
MspR9I	CCNGG	3 cut(s)	153, 351, 951
MvaI	CCWGG	2 cut(s)	351, 951
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	7, 850, 863
NlaIII	CATG	2 cut(s)	98, 574
NlaIV	GGNNCC	5 cut(s)	157, 730, 768, 811, 895
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	508
PagI	TCATGA	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	39, 53
PflMI	CCANNNNNTGG	2 cut(s)	287, 368
PkrI	GCNGC	3 cut(s)	167, 787, 922
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	349, 949
PspGI	CCWGG	2 cut(s)	349, 949
PspN4I	GGNNCC	5 cut(s)	157, 730, 768, 811, 895
PspOMI	GGGCCC	1 cut(s)	766
PspPI	GGNCC	4 cut(s)	155, 766, 767, 893
PstNI	CAGNNNCTG	2 cut(s)	287, 926
PsuI	RGATCY	1 cut(s)	850
RsaI	GTAC	3 cut(s)	247, 604, 845
RsaNI	GTAC	3 cut(s)	246, 603, 844
SaqAI	TTAA	5 cut(s)	387, 540, 624, 975, 1014
SatI	GCNGC	3 cut(s)	166, 786, 921
Sau3AI	GATC	3 cut(s)	7, 850, 863
Sau96I	GGNCC	4 cut(s)	155, 766, 767, 893
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	3 cut(s)	153, 351, 951
SduI	GDGCHC	4 cut(s)	362, 422, 770, 812
SfaNI	GCATC	1 cut(s)	797
SfcI	CTRYAG	1 cut(s)	826
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	651
SmoI	CTYRAG	1 cut(s)	651
Sse9I	AATT	9 cut(s)	184, 382, 436, 517, 547, 556, 625, 642, 871
SspI	AATATT	1 cut(s)	1018
StyD4I	CCNGG	3 cut(s)	151, 349, 949
TaaI	ACNGT	5 cut(s)	250, 716, 752, 763, 830
TaqI	TCGA	1 cut(s)	295
TasI	AATT	9 cut(s)	184, 382, 436, 517, 547, 556, 625, 642, 871
TatI	WGTACW	1 cut(s)	602
TfiI	GAWTC	2 cut(s)	39, 53
Tru1I	TTAA	5 cut(s)	387, 540, 624, 975, 1014
Tru9I	TTAA	5 cut(s)	387, 540, 624, 975, 1014
TscAI	CASTG	6 cut(s)	72, 513, 568, 757, 846, 922
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	3 cut(s)	165, 785, 920
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	4 cut(s)	31, 83, 111, 353
TspGWI	ACGGA	1 cut(s)	861
TspRI	CASTG	6 cut(s)	72, 513, 568, 757, 846, 922
Van91I	CCANNNNNTGG	2 cut(s)	287, 368
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	5 cut(s)	382, 517, 547, 556, 871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.