MD09G1121100.v1.1

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
9349532 .. 9354998
5467 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1121100.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGCAATCCGATAGTGGTAAGTTATTTATTGGCGGCATATCTTGGGATACAAATGAAGAGCGTCTGAAAGAGTATTTCAGTAGTTTTGGGGACGTGGTAGAAGCAGTGATCATGAAAGATCGGACCACAGGCCGTGCTCGTGGTTTCGGTTTTGTAGTTTTTTCTGACCCAGCAGTTGCGGACAGCGTCATAATGGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCCAAAAAGGCTGTTCCTAGGGATGACCAAAACATATTGGGTAGAAGCAGTGGCAGCATCCATGGTTCTCCAGGTCCTGGCCGCACAAGAAAGATTTTCGTTGGAGGTTTAGCGTCCACTGTCACAGAGAGTGACTTCAAGAAGTATTTTGAGCAGTTTGGGACAATCACAGATGTTGTAGTGATGTATGATCACAACACCCAGAGACCAAGAGGCTTTGGATTCATCACTTATGATTCAGAAGAGGCAGTGGACAAGGTTTTGCTTAAAACATTTCATGAACTGAACGGGAAGATGGTTGAAGTCAAGCGTGCAGTTCCCAAAGAGTTATCACCTGGCCCCAGTCGTAGCCCTATTGGTGGATACAACTATGGTCTGAGTAGGGTCAATAGCTTCCTTAATGGCTACACTCAGGGGTATACTCCAAATACAGGTGGAGGCTATGGACTTGGTAGATTCAGTCCAGTTGCTGGTGGTCGTAGTGGATTTCCTCCATTTGGTTCTGGTTATGGAATTGGTATGAATTATGAGCCAGGCTTGAGCCCAGGTTTTGGAGGGAATGCAAATTATAATAATAATAATAATAATAATAATATGAACTATGGACGGGGTGGATTGAGTCCTTATTATATCAATAATTCAAATAGGTTTAGCAATCCCATTGGGTATGATGGTGGTAATGGAGGAAACACATCTTCGTTTTTCAGCTCAATGTCTCGGAACTTGTGGGGGAATGGGGGTGGTGGACCTGATGGTCTTAACTCCACAAATTCTAATGCTTACATCGGATCAGGAAGTGGGACCATTGGAGGAAGTACATTTGGAAATACTGGAGCTAATTGGCCATCTTCAGCAATGTCAGCTCAAGGCGGAGGAAATAATGTTTCTAATAATAGCAGGAGTCTTGGTTATGGAGTTGGGGATAACAGTTACGGTCTGGGAACTGGAGGTTATGGAAGAAACAGTGGTGCAAGTGTGCCCCCTGCATCTTCATTTGCTGCATCAAATGGTGGTTTCGATGGGTCCTTGGCTGACTTTTACAGCAGTAATTCAATTTATGGAGACCCTACTTGGAGATCATCAAATTCCGAGCGAGATGGGTCTGTTCCTTTCGGTTATGAGCTTGGCGGCACAGCTTCGGATGTTTCAGCTAAGAGTTCTCCTGGTTATGTGGGTGGTTATAGTGTTAATAAGAGACAGTCAAACACAGGAATTGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

484

Amino Acids

50.59

Weight (kDa)

8.42

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 8 - 69 9.6e-16 RNA recognition motif
RRM_7 PF16367 106 - 176 1.8e-06 RNA recognition motif
RRM_1 PF00076 108 - 165 3.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AasI GACNNNNNNGTC 1 cut(s) 981
AccB7I CCANNNNNTGG 3 cut(s) 305, 698, 779
AccI GTMKAC 1 cut(s) 647
AciI CCGC 5 cut(s) 33, 179, 310, 1098, 1356
AclWI GGATC 1 cut(s) 1024
AcoI YGGCCR 2 cut(s) 307, 1070
AcsI RAATTY 2 cut(s) 997, 1312
AcuI CTGAAG 1 cut(s) 1062
AfaI GTAC 1 cut(s) 1045
AfiI CCNNNNNNNGG 6 cut(s) 305, 587, 659, 698, 725, 779
AgsI TTSAA 4 cut(s) 367, 530, 870, 1281
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 6 cut(s) 298, 304, 562, 760, 772, 1390
AluBI AGCT 7 cut(s) 621, 936, 1064, 1091, 1351, 1364, 1379
AluI AGCT 7 cut(s) 621, 936, 1064, 1091, 1351, 1364, 1379
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 4 cut(s) 427, 948, 1284, 1417
AlwI GGATC 1 cut(s) 1024
AlwNI CAGNNNCTG 2 cut(s) 305, 698
AoxI GGCC 5 cut(s) 130, 228, 307, 565, 1070
ApeKI GCWGC 3 cut(s) 282, 1226, 1445
ApoI RAATTY 2 cut(s) 997, 1312
AspA2I CCTAGG 1 cut(s) 245
AspS9I GGNCC 6 cut(s) 123, 302, 566, 974, 1029, 1251
AsuHPI GGTGA 1 cut(s) 552
AvaII GGWCC 5 cut(s) 123, 302, 974, 1029, 1251
AvrII CCTAGG 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 1209
BalI TGGCCA 1 cut(s) 1072
BanII GRGCYC 1 cut(s) 773
BauI CACGAG 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 294, 1213, 1432
BccI CCATC 8 cut(s) 206, 214, 517, 893, 974, 1081, 1241, 1319
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 6 cut(s) 300, 306, 564, 762, 774, 1392
BciVI GTATCC 2 cut(s) 40, 584
BclI TGATCA 2 cut(s) 108, 418
BcoDI GTCTC 4 cut(s) 427, 948, 1284, 1417
BfaI CTAG 2 cut(s) 246, 1450
BfuI GTATCC 2 cut(s) 40, 584
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 6 cut(s) 34, 283, 310, 1227, 1357, 1446
BlnI CCTAGG 1 cut(s) 245
BlsI GCNGC 6 cut(s) 35, 284, 311, 1228, 1358, 1447
Bme1390I CCNGG 6 cut(s) 300, 306, 564, 762, 774, 1392
Bme18I GGWCC 5 cut(s) 123, 302, 974, 1029, 1251
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 6 cut(s) 123, 302, 566, 974, 1029, 1251
BmiI GGNNCC 3 cut(s) 568, 1030, 1252
BmrFI CCNGG 6 cut(s) 300, 306, 564, 762, 774, 1392
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 3 cut(s) 294, 1223, 1238
BmuI ACTGGG 1 cut(s) 564
BpmI CTGGAG 3 cut(s) 282, 1080, 1194
BpuEI CTTGAG 2 cut(s) 787, 1077
BsaI GGTCTC 2 cut(s) 427, 1284
BsaJI CCNNGG 4 cut(s) 245, 289, 772, 1254
BsaXI ACNNNNNCTCC 2 cut(s) 1120, 1150
Bsc4I CCNNNNNNNGG 6 cut(s) 305, 587, 659, 698, 725, 779
Bse1I ACTGG 4 cut(s) 570, 692, 1063, 1177
Bse3DI GCAATG 1 cut(s) 1089
BseBI CCWGG 6 cut(s) 300, 306, 564, 762, 774, 1392
BseDI CCNNGG 4 cut(s) 245, 289, 772, 1254
BseGI GGATG 4 cut(s) 225, 256, 285, 1375
BseLI CCNNNNNNNGG 6 cut(s) 305, 587, 659, 698, 725, 779
BseMI GCAATG 1 cut(s) 1089
BseMII CTCAG 2 cut(s) 596, 653
BseNI ACTGG 4 cut(s) 570, 692, 1063, 1177
BseSI GKGCMC 1 cut(s) 1209
BseXI GCAGC 3 cut(s) 294, 1213, 1432
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 561
BshFI GGCC 5 cut(s) 132, 230, 309, 567, 1072
BsiHKAI GWGCWC 1 cut(s) 139
BslFI GGGAC 3 cut(s) 104, 403, 1042
BslI CCNNNNNNNGG 6 cut(s) 305, 587, 659, 698, 725, 779
BsmAI GTCTC 4 cut(s) 427, 948, 1284, 1417
BsmFI GGGAC 3 cut(s) 104, 403, 1042
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 5 cut(s) 132, 230, 309, 567, 1072
Bso31I GGTCTC 2 cut(s) 427, 1284
Bsp1286I GDGCHC 3 cut(s) 139, 773, 1209
Bsp143I GATC 5 cut(s) 108, 118, 418, 1016, 1304
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 5 cut(s) 33, 179, 310, 1098, 1356
BspANI GGCC 5 cut(s) 132, 230, 309, 567, 1072
BspCNI CTCAG 2 cut(s) 597, 652
BspHI TCATGA 2 cut(s) 111, 505
BspLI GGNNCC 3 cut(s) 568, 1030, 1252
BspPI GGATC 1 cut(s) 1024
BspQI GCTCTTC 1 cut(s) 51
BspTNI GGTCTC 2 cut(s) 427, 1284
BsrDI GCAATG 1 cut(s) 1089
BsrI ACTGG 4 cut(s) 570, 692, 1063, 1177
BssECI CCNNGG 4 cut(s) 245, 289, 772, 1254
BssMI GATC 5 cut(s) 108, 118, 418, 1016, 1304
BssNAI GTATAC 1 cut(s) 648
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 3 cut(s) 245, 289, 1254
Bst1107I GTATAC 1 cut(s) 648
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 6 cut(s) 300, 306, 564, 762, 774, 1392
Bst4CI ACNGT 5 cut(s) 349, 1157, 1163, 1193, 1428
Bst6I CTCTTC 2 cut(s) 51, 465
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 3 cut(s) 605, 639, 1380
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 4 cut(s) 225, 256, 285, 1375
BstKTI GATC 5 cut(s) 111, 121, 421, 1019, 1307
BstMAI GTCTC 4 cut(s) 427, 948, 1284, 1417
BstMBI GATC 5 cut(s) 108, 118, 418, 1016, 1304
BstMWI GCNNNNNNNGC 3 cut(s) 236, 282, 1088
BstNI CCWGG 6 cut(s) 300, 306, 564, 762, 774, 1392
BstSCI CCNGG 6 cut(s) 298, 304, 562, 760, 772, 1390
BstSLI GKGCMC 1 cut(s) 1209
BstV1I GCAGC 3 cut(s) 294, 1213, 1432
BstZ17I GTATAC 1 cut(s) 648
BsuI GTATCC 2 cut(s) 40, 584
BsuRI GGCC 5 cut(s) 132, 230, 309, 567, 1072
BtgI CCRYGG 1 cut(s) 289
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 4 cut(s) 225, 256, 285, 1375
BtsI GCAGTG 3 cut(s) 111, 283, 483
BtsIMutI CAGTG 5 cut(s) 111, 283, 345, 483, 1198
Cac8I GCNNGC 1 cut(s) 540
CaiI CAGNNNCTG 2 cut(s) 305, 698
CciI TCATGA 2 cut(s) 111, 505
Cfr13I GGNCC 6 cut(s) 123, 302, 566, 974, 1029, 1251
CseI GACGC 3 cut(s) 50, 175, 330
Csp6I GTAC 1 cut(s) 1044
CviAII CATG 3 cut(s) 112, 290, 506
CviQI GTAC 1 cut(s) 1044
DdeI CTNAG 3 cut(s) 605, 639, 1380
DpnI GATC 5 cut(s) 110, 120, 420, 1018, 1306
DpnII GATC 5 cut(s) 108, 118, 418, 1016, 1304
DrdI GACNNNNNNGTC 1 cut(s) 981
DseDI GACNNNNNNGTC 1 cut(s) 981
EaeI YGGCCR 2 cut(s) 307, 1070
Eam1104I CTCTTC 2 cut(s) 51, 465
EarI CTCTTC 2 cut(s) 51, 465
EciI GGCGGA 1 cut(s) 1113
Eco130I CCWWGG 3 cut(s) 245, 289, 1254
Eco24I GRGCYC 1 cut(s) 773
Eco31I GGTCTC 2 cut(s) 427, 1284
Eco47I GGWCC 5 cut(s) 123, 302, 974, 1029, 1251
Eco57I CTGAAG 1 cut(s) 1062
EcoO109I RGGNCCY 2 cut(s) 302, 1251
EcoRII CCWGG 6 cut(s) 298, 304, 562, 760, 772, 1390
EcoT14I CCWWGG 3 cut(s) 245, 289, 1254
EcoT38I GRGCYC 1 cut(s) 773
ErhI CCWWGG 3 cut(s) 245, 289, 1254
FaeI CATG 3 cut(s) 115, 293, 509
FaqI GGGAC 3 cut(s) 104, 403, 1042
FatI CATG 3 cut(s) 111, 289, 505
FbaI TGATCA 2 cut(s) 108, 418
FblI GTMKAC 1 cut(s) 647
Fnu4HI GCNGC 6 cut(s) 34, 283, 310, 1227, 1357, 1446
FokI GGATG 4 cut(s) 232, 263, 272, 1382
FriOI GRGCYC 1 cut(s) 773
Fsp4HI GCNGC 6 cut(s) 34, 283, 310, 1227, 1357, 1446
FspBI CTAG 2 cut(s) 246, 1450
GluI GCNGC 6 cut(s) 34, 283, 310, 1227, 1357, 1446
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 3 cut(s) 282, 1080, 1194
HaeIII GGCC 5 cut(s) 132, 230, 309, 567, 1072
HgaI GACGC 3 cut(s) 50, 175, 330
Hin1II CATG 3 cut(s) 115, 293, 509
HinfI GANTC 5 cut(s) 450, 464, 684, 847, 1129
HphI GGTGA 1 cut(s) 552
Hpy166II GTNNAC 4 cut(s) 345, 481, 648, 974
Hpy188III TCNNGA 4 cut(s) 112, 367, 506, 1020
Hpy8I GTNNAC 4 cut(s) 345, 481, 648, 974
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 5 cut(s) 349, 1157, 1163, 1193, 1428
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 6 cut(s) 4, 542, 791, 1199, 1214, 1229
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 282, 1088
HpyF3I CTNAG 3 cut(s) 605, 639, 1380
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 3 cut(s) 115, 293, 509
Ksp22I TGATCA 2 cut(s) 108, 418
Kzo9I GATC 5 cut(s) 108, 118, 418, 1016, 1304
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 1061
Lsp1109I GCAGC 3 cut(s) 294, 1213, 1432
LweI GCATC 3 cut(s) 294, 1223, 1238
MaeI CTAG 2 cut(s) 246, 1450
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 349, 359, 1157
MalI GATC 5 cut(s) 110, 120, 420, 1018, 1306
MboI GATC 5 cut(s) 108, 118, 418, 1016, 1304
MboII GAAGA 7 cut(s) 68, 482, 532, 915, 1068, 1197, 1209
MhlI GDGCHC 3 cut(s) 139, 773, 1209
MlsI TGGCCA 1 cut(s) 1072
MluNI TGGCCA 1 cut(s) 1072
MlyI GAGTC 2 cut(s) 856, 1138
MmeI TCCRAC 1 cut(s) 310
Mox20I TGGCCA 1 cut(s) 1072
MscI TGGCCA 1 cut(s) 1072
MseI TTAA 4 cut(s) 495, 627, 987, 1416
Msp20I TGGCCA 1 cut(s) 1072
MspR9I CCNGG 6 cut(s) 300, 306, 564, 762, 774, 1392
Mva1269I GAATGC 1 cut(s) 793
MvaI CCWGG 6 cut(s) 300, 306, 564, 762, 774, 1392
MwoI GCNNNNNNNGC 3 cut(s) 236, 282, 1088
NcoI CCATGG 1 cut(s) 289
NdeII GATC 5 cut(s) 108, 118, 418, 1016, 1304
NlaIII CATG 3 cut(s) 115, 293, 509
NlaIV GGNNCC 3 cut(s) 568, 1030, 1252
NmuCI GTSAC 2 cut(s) 349, 359
PagI TCATGA 2 cut(s) 111, 505
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 1 cut(s) 793
PfeI GAWTC 3 cut(s) 450, 464, 684
PflFI GACNNNGTC 1 cut(s) 185
PflMI CCANNNNNTGG 3 cut(s) 305, 698, 779
PkrI GCNGC 6 cut(s) 35, 284, 311, 1228, 1358, 1447
PleI GAGTC 2 cut(s) 855, 1137
PpsI GAGTC 2 cut(s) 855, 1137
PpuMI RGGWCCY 2 cut(s) 302, 1251
PsiI TTATAA 1 cut(s) 798
Psp5II RGGWCCY 2 cut(s) 302, 1251
Psp6I CCWGG 6 cut(s) 298, 304, 562, 760, 772, 1390
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 6 cut(s) 298, 304, 562, 760, 772, 1390
PspN4I GGNNCC 3 cut(s) 568, 1030, 1252
PspPI GGNCC 6 cut(s) 123, 302, 566, 974, 1029, 1251
PspPPI RGGWCCY 2 cut(s) 302, 1251
PstNI CAGNNNCTG 2 cut(s) 305, 698
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 1 cut(s) 1045
RsaNI GTAC 1 cut(s) 1044
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 4 cut(s) 495, 627, 987, 1416
SatI GCNGC 6 cut(s) 34, 283, 310, 1227, 1357, 1446
Sau3AI GATC 5 cut(s) 108, 118, 418, 1016, 1304
Sau96I GGNCC 6 cut(s) 123, 302, 566, 974, 1029, 1251
SchI GAGTC 2 cut(s) 856, 1138
ScrFI CCNGG 6 cut(s) 300, 306, 564, 762, 774, 1392
SduI GDGCHC 3 cut(s) 139, 773, 1209
SfaNI GCATC 3 cut(s) 294, 1223, 1238
SinI GGWCC 5 cut(s) 123, 302, 974, 1029, 1251
SmlI CTYRAG 2 cut(s) 766, 1092
SmoI CTYRAG 2 cut(s) 766, 1092
SsiI CCGC 5 cut(s) 33, 179, 310, 1098, 1356
SspMI CTAG 2 cut(s) 246, 1450
StyD4I CCNGG 6 cut(s) 298, 304, 562, 760, 772, 1390
StyI CCWWGG 3 cut(s) 245, 289, 1254
TaaI ACNGT 5 cut(s) 349, 1157, 1163, 1193, 1428
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 1245
TatI WGTACW 1 cut(s) 1043
TauI GCSGC 3 cut(s) 36, 312, 1359
TfiI GAWTC 3 cut(s) 450, 464, 684
Tru1I TTAA 4 cut(s) 495, 627, 987, 1416
Tru9I TTAA 4 cut(s) 495, 627, 987, 1416
TscAI CASTG 5 cut(s) 111, 283, 352, 483, 1198
TseFI GTSAC 2 cut(s) 349, 359
TseI GCWGC 3 cut(s) 282, 1226, 1445
Tsp45I GTSAC 2 cut(s) 349, 359
TspDTI ATGAA 8 cut(s) 69, 128, 442, 494, 522, 764, 839, 1209
TspRI CASTG 5 cut(s) 111, 283, 352, 483, 1198
Tth111I GACNNNGTC 1 cut(s) 185
Van91I CCANNNNNTGG 3 cut(s) 305, 698, 779
VpaK11BI GGWCC 5 cut(s) 123, 302, 974, 1029, 1251
XapI RAATTY 2 cut(s) 997, 1312
XmaJI CCTAGG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 647
XspI CTAG 2 cut(s) 246, 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.