Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002028

Physical Location & Seq

Genomic Coordinates Reverse (-)

14173010 .. 14178892

Gene Structure 5883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAAAAGCACAACATTGATGGAAGAATGGTGGAGGCAAAAAAGGCTGTTCCCAGGGATGACCAGAACACTTTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCAGGTCCAGGACGCACAAGAAAAATATTTGTTGGAGGTTTAGCATCTACTGTTACAGAGGGTGACTTCAAGAAGTACTTTGAACAGTTTGGGACAATTACAGATGTTGTGGTGATGTATGATCACAACACCCAGAGGCCGAGAGGCTTTGGATTCATCACTTATGATTCAGAGGAAGCAGTGGATAAGGTTTTGCTAAAGACATTTCATGAACTGAATGGGAAGATGGTTGAGGTCAAGCGTGCAGTTCCAAAAGAGTTATCACCTGGTCCCAGTCGCAGCCCTCTTGGTGGATACAATTATGGTCTGAGTAGGGTCAATAGCTTCCTTGCTGGCTATACTCAGGGGTATAATCCAACTACGGTTGGAGGTTATGGACTTGGTAGGTTCAGTCCAGTTGCTGGTGGTCGAAGTGGATTTCCTCCATTTGGTTCTGGTTATGGAATGGGAATGAACTTTGAGCCAGGGTTGAGCCCAAGCTTTGGAGGAAATGCAAATTTTAATAATAATGTGAGCTATGGACGGGGATTGAGCCCTTATTATATCAATAATTCAAGTAGGTTTAGCAATCCCATTGGATATGATGGTAATAATGGAGGAAGCTCATCCTTTTTTAGCTCAGTGACTCGGAATTTGTGGGGTAATGGGGGTCTTAATACAAATTCTGCAAATTCCAGTGCTTACATGGGTTCAGGAAGTGGTAGCATTGGAGGAAGTACATTTGGCAATGCTGGAGTTAATTGGCGTTCTTCAGCAATTTCACCTCAAGGTGGAGGAAATAATGTCTCTAACAATAGTGGGACACTTGGCTATGGAGCTGGTGATAATAGTTATGGCTTGGGAACCGGAGGTTATGGAAGAAACAGTGGTGCAACTGCGGGCCCTACATCTTCTTTTGCTGCATCAAATGGTGGTTTTGAGGGCTCCTTAGCTGACTTCTACAGTAGTGGTTCAGTGTACGGAGATCCTACTTGGAGATCATCAAATTCTGAGCGAGATGGGTCTGGCCCCTTTGGGTATGGGCTTGGCAGTGCAGCTTCTGATGTTTCAGCTAAAAGTTCTCCTGGTTATGTTGGTGGTTATAGTGTTAATAAGAGACAGCCGAATACAGGTGATGACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

409

Amino Acids

42.44

Weight (kDa)

9.21

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	42 - 112	2.5e-06	RNA recognition motif
RRM_1	PF00076	44 - 101	1e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07810 AT3G07810
fragaria_vesca	FvH4_6g41280 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320
malus_domestica	MD09G1120600.v1.1 MD09G1121100.v1.1 MD17G1111500.v1.1 MD17G1112100.v1.1
prunus_persica	Prupe.3G202600_v2.0.a1 Prupe.3G202600_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1
pyrus_communis	pycom09g04550 pycom17g10350 pycom17g10380
rosa_chinensis	RchiOBHm_Chr2g0156821 RchiOBHm_Chr2g0156871
rosa_laevigata	RLG00000020945 RLG00000020948
rosa_multiflora	Rmu_co8440963.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092640 Rroxscaffold_2G00092680
rosa_rugosa	Rorug02G0456400 Rorug02G0456500 Rorug02G0456800 Rorug02G0456800 Rorug02G0456800 Rorug02G0456900 Rorug02G0456900 Rorug02G0456900
rosa_samantha	Rh2AG522100 Rh2AG522400 Rh2BG535500 Rh2BG535700 Rh2CG507000 Rh2CG507300 Rh2DG544500 Rh2DG544700
rosa_wichuraiana	Rw2G043110 Rw2G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	506, 587
AciI	CCGC	1 cut(s)	983
AclWI	GGATC	1 cut(s)	1064
AcsI	RAATTY	5 cut(s)	601, 736, 766, 775, 1090
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	3 cut(s)	182, 823, 1064
AfiI	CCNNNNNNNGG	7 cut(s)	113, 395, 506, 533, 587, 875, 1214
AgsI	TTSAA	3 cut(s)	175, 188, 660
AjnI	CCWGG	6 cut(s)	53, 106, 112, 370, 568, 1168
AluBI	AGCT	9 cut(s)	429, 585, 621, 708, 723, 923, 1037, 1142, 1157
AluI	AGCT	9 cut(s)	429, 585, 621, 708, 723, 923, 1037, 1142, 1157
Alw26I	GTCTC	2 cut(s)	895, 1195
AlwI	GGATC	1 cut(s)	1064
AlwNI	CAGNNNCTG	2 cut(s)	506, 1145
AoxI	GGCC	3 cut(s)	242, 985, 1111
ApaI	GGGCCC	1 cut(s)	989
ApeKI	GCWGC	4 cut(s)	90, 384, 1004, 1139
ApoI	RAATTY	5 cut(s)	601, 736, 766, 775, 1090
ArsI	GACNNNNNNTTYG	2 cut(s)	721, 753
AspS9I	GGNCC	5 cut(s)	110, 374, 985, 986, 1112
AsuHPI	GGTGA	6 cut(s)	179, 229, 360, 858, 938, 1229
AvaII	GGWCC	2 cut(s)	110, 374
BaeGI	GKGCMC	1 cut(s)	989
BanII	GRGCYC	4 cut(s)	581, 641, 989, 1031
BbvI	GCAGC	4 cut(s)	102, 396, 991, 1151
BccI	CCATC	4 cut(s)	14, 325, 683, 1097
BciT130I	CCWGG	6 cut(s)	55, 108, 114, 372, 570, 1170
BciVI	GTATCC	1 cut(s)	392
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	895, 1195
BfmI	CTRYAG	1 cut(s)	1045
BfuI	GTATCC	1 cut(s)	392
BisI	GCNGC	4 cut(s)	91, 385, 1005, 1140
BlsI	GCNGC	4 cut(s)	92, 386, 1006, 1141
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	6 cut(s)	55, 108, 114, 372, 570, 1170
Bme18I	GGWCC	2 cut(s)	110, 374
BmgT120I	GGNCC	5 cut(s)	110, 374, 985, 986, 1112
BmiI	GGNNCC	5 cut(s)	376, 949, 987, 1030, 1114
BmrFI	CCNGG	6 cut(s)	55, 108, 114, 372, 570, 1170
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	3 cut(s)	102, 158, 1016
BmuI	ACTGGG	1 cut(s)	372
BpmI	CTGGAG	2 cut(s)	90, 858
Bpu10I	CCTNAGC	1 cut(s)	1033
BpuEI	CTTGAG	1 cut(s)	855
BsaJI	CCNNGG	4 cut(s)	53, 54, 97, 569
BsaWI	WCCGGW	1 cut(s)	950
Bsc4I	CCNNNNNNNGG	7 cut(s)	113, 395, 506, 533, 587, 875, 1214
Bse1I	ACTGG	3 cut(s)	378, 500, 780
Bse3DI	GCAATG	1 cut(s)	838
BseBI	CCWGG	6 cut(s)	55, 108, 114, 372, 570, 1170
BseDI	CCNNGG	4 cut(s)	53, 54, 97, 569
BseGI	GGATG	3 cut(s)	64, 93, 710
BseLI	CCNNNNNNNGG	7 cut(s)	113, 395, 506, 533, 587, 875, 1214
BseMI	GCAATG	1 cut(s)	838
BseMII	CTCAG	4 cut(s)	404, 461, 738, 1086
BseNI	ACTGG	3 cut(s)	378, 500, 780
BseSI	GKGCMC	1 cut(s)	989
BseXI	GCAGC	4 cut(s)	102, 396, 991, 1151
BsgI	GTGCAG	2 cut(s)	369, 1158
BshFI	GGCC	3 cut(s)	244, 987, 1113
BsiSI	CCGG	1 cut(s)	951
BslFI	GGGAC	3 cut(s)	211, 360, 919
BslI	CCNNNNNNNGG	7 cut(s)	113, 395, 506, 533, 587, 875, 1214
BsmAI	GTCTC	2 cut(s)	895, 1195
BsmFI	GGGAC	3 cut(s)	211, 360, 919
BsnI	GGCC	3 cut(s)	244, 987, 1113
Bsp120I	GGGCCC	1 cut(s)	985
Bsp1286I	GDGCHC	4 cut(s)	581, 641, 989, 1031
Bsp143I	GATC	3 cut(s)	226, 1069, 1082
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	1 cut(s)	983
BspANI	GGCC	3 cut(s)	244, 987, 1113
BspCNI	CTCAG	4 cut(s)	405, 460, 737, 1087
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	5 cut(s)	376, 949, 987, 1030, 1114
BspPI	GGATC	1 cut(s)	1064
BsrDI	GCAATG	1 cut(s)	838
BsrI	ACTGG	3 cut(s)	378, 500, 780
BssECI	CCNNGG	4 cut(s)	53, 54, 97, 569
BssMI	GATC	3 cut(s)	226, 1069, 1082
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	6 cut(s)	55, 108, 114, 372, 570, 1170
Bst4CI	ACNGT	6 cut(s)	86, 157, 192, 469, 971, 1049
BstC8I	GCNNGC	3 cut(s)	348, 439, 985
BstDEI	CTNAG	5 cut(s)	413, 447, 724, 1033, 1095
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	3 cut(s)	64, 93, 710
BstKTI	GATC	3 cut(s)	229, 1072, 1085
BstMAI	GTCTC	2 cut(s)	895, 1195
BstMBI	GATC	3 cut(s)	226, 1069, 1082
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	6 cut(s)	55, 108, 114, 372, 570, 1170
BstSCI	CCNGG	6 cut(s)	53, 106, 112, 370, 568, 1168
BstSFI	CTRYAG	1 cut(s)	1045
BstSLI	GKGCMC	1 cut(s)	989
BstV1I	GCAGC	4 cut(s)	102, 396, 991, 1151
BstX2I	RGATCY	1 cut(s)	1069
BstYI	RGATCY	1 cut(s)	1069
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	244, 987, 1113
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	3 cut(s)	64, 93, 710
BtsI	GCAGTG	2 cut(s)	291, 1141
BtsIMutI	CAGTG	7 cut(s)	91, 291, 732, 787, 976, 1065, 1141
Cac8I	GCNNGC	3 cut(s)	348, 439, 985
CaiI	CAGNNNCTG	2 cut(s)	506, 1145
CciI	TCATGA	1 cut(s)	313
Cfr13I	GGNCC	5 cut(s)	110, 374, 985, 986, 1112
CseI	GACGC	1 cut(s)	126
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	3 cut(s)	181, 822, 1063
CviAII	CATG	3 cut(s)	98, 314, 790
CviQI	GTAC	3 cut(s)	181, 822, 1063
DdeI	CTNAG	5 cut(s)	413, 447, 724, 1033, 1095
DpnI	GATC	3 cut(s)	228, 1071, 1084
DpnII	GATC	3 cut(s)	226, 1069, 1082
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	4 cut(s)	581, 641, 989, 1031
Eco47I	GGWCC	2 cut(s)	110, 374
Eco57I	CTGAAG	1 cut(s)	840
EcoO109I	RGGNCCY	1 cut(s)	986
EcoRII	CCWGG	6 cut(s)	53, 106, 112, 370, 568, 1168
EcoT14I	CCWWGG	1 cut(s)	97
EcoT38I	GRGCYC	4 cut(s)	581, 641, 989, 1031
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	3 cut(s)	101, 317, 793
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	3 cut(s)	211, 360, 919
FatI	CATG	3 cut(s)	97, 313, 789
FauI	CCCGC	1 cut(s)	976
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	4 cut(s)	91, 385, 1005, 1140
FokI	GGATG	3 cut(s)	71, 80, 697
FriOI	GRGCYC	4 cut(s)	581, 641, 989, 1031
Fsp4HI	GCNGC	4 cut(s)	91, 385, 1005, 1140
GluI	GCNGC	4 cut(s)	91, 385, 1005, 1140
GsuI	CTGGAG	2 cut(s)	90, 858
HaeIII	GGCC	3 cut(s)	244, 987, 1113
HapII	CCGG	1 cut(s)	951
HgaI	GACGC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	101, 317, 793
HindIII	AAGCTT	1 cut(s)	583
HinfI	GANTC	3 cut(s)	258, 272, 730
HpaII	CCGG	1 cut(s)	951
HphI	GGTGA	6 cut(s)	179, 229, 360, 858, 938, 1229
Hpy166II	GTNNAC	1 cut(s)	1063
Hpy188I	TCNGA	5 cut(s)	277, 414, 735, 1096, 1147
Hpy188III	TCNNGA	3 cut(s)	175, 314, 798
Hpy8I	GTNNAC	1 cut(s)	1063
HpyCH4III	ACNGT	6 cut(s)	86, 157, 192, 469, 971, 1049
HpyCH4V	TGCA	6 cut(s)	350, 599, 773, 977, 1007, 1139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	5 cut(s)	413, 447, 724, 1033, 1095
Hsp92II	CATG	3 cut(s)	101, 317, 793
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	226, 1069, 1082
LmnI	GCTCC	2 cut(s)	920, 1034
Lsp1109I	GCAGC	4 cut(s)	102, 396, 991, 1151
LweI	GCATC	3 cut(s)	102, 158, 1016
MabI	ACCWGGT	1 cut(s)	370
MaeIII	GTNAC	3 cut(s)	157, 167, 727
MalI	GATC	3 cut(s)	228, 1071, 1084
MboI	GATC	3 cut(s)	226, 1069, 1082
MboII	GAAGA	5 cut(s)	36, 340, 846, 975, 987
MflI	RGATCY	1 cut(s)	1069
MhlI	GDGCHC	4 cut(s)	581, 641, 989, 1031
MlyI	GAGTC	1 cut(s)	724
MmeI	TCCRAC	3 cut(s)	118, 451, 485
MseI	TTAA	4 cut(s)	606, 759, 843, 1194
MspI	CCGG	1 cut(s)	951
MspR9I	CCNGG	6 cut(s)	55, 108, 114, 372, 570, 1170
MvaI	CCWGG	6 cut(s)	55, 108, 114, 372, 570, 1170
MwoI	GCNNNNNNNGC	1 cut(s)	44
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	3 cut(s)	226, 1069, 1082
NlaIII	CATG	3 cut(s)	101, 317, 793
NlaIV	GGNNCC	5 cut(s)	376, 949, 987, 1030, 1114
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	2 cut(s)	167, 727
PagI	TCATGA	1 cut(s)	313
PasI	CCCWGGG	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	258, 272
PflMI	CCANNNNNTGG	2 cut(s)	506, 587
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	92, 386, 1006, 1141
PleI	GAGTC	1 cut(s)	724
PpsI	GAGTC	1 cut(s)	724
Psp6I	CCWGG	6 cut(s)	53, 106, 112, 370, 568, 1168
PspGI	CCWGG	6 cut(s)	53, 106, 112, 370, 568, 1168
PspN4I	GGNNCC	5 cut(s)	376, 949, 987, 1030, 1114
PspOMI	GGGCCC	1 cut(s)	985
PspPI	GGNCC	5 cut(s)	110, 374, 985, 986, 1112
PstNI	CAGNNNCTG	2 cut(s)	506, 1145
PsuI	RGATCY	1 cut(s)	1069
RsaI	GTAC	3 cut(s)	182, 823, 1064
RsaNI	GTAC	3 cut(s)	181, 822, 1063
SaqAI	TTAA	4 cut(s)	606, 759, 843, 1194
SatI	GCNGC	4 cut(s)	91, 385, 1005, 1140
Sau3AI	GATC	3 cut(s)	226, 1069, 1082
Sau96I	GGNCC	5 cut(s)	110, 374, 985, 986, 1112
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	1 cut(s)	724
ScrFI	CCNGG	6 cut(s)	55, 108, 114, 372, 570, 1170
SduI	GDGCHC	4 cut(s)	581, 641, 989, 1031
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	3 cut(s)	102, 158, 1016
SfcI	CTRYAG	1 cut(s)	1045
SinI	GGWCC	2 cut(s)	110, 374
SmlI	CTYRAG	1 cut(s)	870
SmoI	CTYRAG	1 cut(s)	870
SsiI	CCGC	1 cut(s)	983
SspI	AATATT	1 cut(s)	132
StyD4I	CCNGG	6 cut(s)	53, 106, 112, 370, 568, 1168
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	6 cut(s)	86, 157, 192, 469, 971, 1049
TaqI	TCGA	1 cut(s)	514
TatI	WGTACW	2 cut(s)	180, 821
TfiI	GAWTC	2 cut(s)	258, 272
Tru1I	TTAA	4 cut(s)	606, 759, 843, 1194
Tru9I	TTAA	4 cut(s)	606, 759, 843, 1194
TscAI	CASTG	7 cut(s)	91, 291, 732, 787, 976, 1065, 1141
TseFI	GTSAC	2 cut(s)	167, 727
TseI	GCWGC	4 cut(s)	90, 384, 1004, 1139
Tsp45I	GTSAC	2 cut(s)	167, 727
TspDTI	ATGAA	4 cut(s)	250, 302, 330, 572
TspGWI	ACGGA	1 cut(s)	1080
TspRI	CASTG	7 cut(s)	91, 291, 732, 787, 976, 1065, 1141
Van91I	CCANNNNNTGG	2 cut(s)	506, 587
VpaK11BI	GGWCC	2 cut(s)	110, 374
XapI	RAATTY	5 cut(s)	601, 736, 766, 775, 1090
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.