Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002028

Physical Location & Seq

Genomic Coordinates Reverse (-)

3367248 .. 3368932

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGAAAGATCGGACCACAGGCCGTGCTCGTGGTTTCGGTTTTGTAGTTTTTTCTGACCCAGCAGTTGCGGACAGCGTCATAATGGAGAAGCATAACATTGATGGAAGGATGGTTGAGGCTAAAAAGGCTGTTCCTAGGGATGACCAAAACATATTGGGTAGAAGCAGTGGCAGCATCCATGGTTCTCCAGGTCCTGGCCGCACAAGAAAGATTTTCGTTGGAGGTTTAGCGTCCACTGTCACAGAGAGTGACTTCAAGAAGTATTTTGAGCAGTTTGGGACAATCACGGATGTTGTAGTGATGTATGATCACAGCACCCAGAGACCAAGAGGCTTTGGATTCATCACTTATGATTCAGAAGAGGCAGTGGACAAGGTTTTGCTTAAGACATTTCATGAACTGAATGGGAAGATGGTTGAAGTCAAGCGTGCAGTTCCCAAAGAGTTATCACCTGGCTCCAGTCGTAGCCCTATTGGTGGATACAACTATGGTCTGAGTAGGGTCAATAGCTTGCTTAATGGCTACACTCAGGGGTATATTCCAAATACAGGTGGAGGCTATGGACTTGGTAGATTCAGTCCAGTTGCTGGTGGTCGTAGTGGATTTCCTCCATTTGGTTCTGGTTATGGAATTGGTATGAATTATGAGCCAGGCTTGAGCCCAGGTTTTGGAGGAAATGCAAATTATAATAATAATAATAATAATATGAACTATGGACGGGGTGGATTGAGTCCTTATTATATCAATAATTCAAATAGGTTTAGCAATCCCATTGGGTATGATGGCGGTAATGGAGGAAACACATCTTCGTTTTTCAGCTCAGTGTCTCGGAACCTGTGGGGGAATGGGGGTGGTGGACCTGATGGTCTTAACTTCACAAATTCTAATGCTTACATTGGATCAGGAAGTGGGACCATTGGAGGAAGTACATTTGGAAATACTGGGGCTAATTGGCCATCTTCAGCAATGTCAGCTCAAGGCGGAGGAAATAATGTTTCTAATAATAGCAGTAATCTTGGTTATGGAGTTGGGGATAACAGTTATGGTCTGGGAACTGGAGGTTATGGAAGAAACAGTGGTGCAAGTGTGCCCCCTACATCTTCATTTGCTGCATCAAATGGTGGTTTCGATGGGTCCTTGGCTGACTTTTACAGCAGTAATTCAATTTATGGAGACCCTACTTGGAGATCATCAAATTCCGAGCGAGATGGGTCTGTCCCTTTCGGTTATGGGCTTGGCGGCACAGCTTCTGATGTTTCAACTAAGAGTTCTCCAGGTTATGTGGGTGGTTATAGTGTTAATAAGAGACAGTCAAACACAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

442

Amino Acids

45.88

Weight (kDa)

9.18

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	69 - 139	2.5e-06	RNA recognition motif
RRM_1	PF00076	71 - 128	6.1e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07810 AT3G07810
fragaria_vesca	FvH4_6g41280 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320
malus_domestica	MD09G1120600.v1.1 MD09G1121100.v1.1 MD17G1111500.v1.1 MD17G1112100.v1.1
prunus_persica	Prupe.3G202600_v2.0.a1 Prupe.3G202600_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1
pyrus_communis	pycom09g04550 pycom17g10350 pycom17g10380
rosa_chinensis	RchiOBHm_Chr2g0156821 RchiOBHm_Chr2g0156871
rosa_laevigata	RLG00000020945 RLG00000020948
rosa_multiflora	Rmu_co8440963.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092640 Rroxscaffold_2G00092680
rosa_rugosa	Rorug02G0456400 Rorug02G0456500 Rorug02G0456800 Rorug02G0456800 Rorug02G0456800 Rorug02G0456900 Rorug02G0456900 Rorug02G0456900
rosa_samantha	Rh2AG522100 Rh2AG522400 Rh2BG535500 Rh2BG535700 Rh2CG507000 Rh2CG507300 Rh2DG544500 Rh2DG544700
rosa_wichuraiana	Rw2G043110 Rw2G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
AasI	GACNNNNNNGTC	1 cut(s)	864
AccB7I	CCANNNNNTGG	3 cut(s)	194, 587, 668
AciI	CCGC	5 cut(s)	68, 199, 786, 981, 1239
AclWI	GGATC	1 cut(s)	907
AcoI	YGGCCR	2 cut(s)	196, 953
AcsI	RAATTY	2 cut(s)	880, 1195
AcuI	CTGAAG	1 cut(s)	945
AfaI	GTAC	1 cut(s)	928
AfiI	CCNNNNNNNGG	6 cut(s)	194, 476, 548, 587, 614, 668
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	256, 419, 753, 1164, 1260
AjnI	CCWGG	6 cut(s)	187, 193, 451, 649, 661, 1273
AluBI	AGCT	4 cut(s)	510, 819, 974, 1247
AluI	AGCT	4 cut(s)	510, 819, 974, 1247
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	4 cut(s)	316, 831, 1167, 1300
AlwI	GGATC	1 cut(s)	907
AlwNI	CAGNNNCTG	3 cut(s)	194, 587, 1250
AoxI	GGCC	3 cut(s)	19, 196, 953
ApeKI	GCWGC	2 cut(s)	171, 1109
ApoI	RAATTY	2 cut(s)	880, 1195
AspA2I	CCTAGG	1 cut(s)	134
AspS9I	GGNCC	5 cut(s)	12, 191, 857, 912, 1134
AsuHPI	GGTGA	1 cut(s)	441
AvaII	GGWCC	5 cut(s)	12, 191, 857, 912, 1134
AvrII	CCTAGG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	1092
BalI	TGGCCA	1 cut(s)	955
BanII	GRGCYC	1 cut(s)	662
BauI	CACGAG	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	183, 1096
BccI	CCATC	8 cut(s)	95, 103, 406, 776, 857, 964, 1124, 1202
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	6 cut(s)	189, 195, 453, 651, 663, 1275
BciVI	GTATCC	1 cut(s)	473
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	4 cut(s)	316, 831, 1167, 1300
BfaI	CTAG	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	383
BfuI	GTATCC	1 cut(s)	473
BisI	GCNGC	4 cut(s)	172, 199, 1110, 1240
BlnI	CCTAGG	1 cut(s)	134
BlsI	GCNGC	4 cut(s)	173, 200, 1111, 1241
Bme1390I	CCNGG	6 cut(s)	189, 195, 453, 651, 663, 1275
Bme18I	GGWCC	5 cut(s)	12, 191, 857, 912, 1134
BmgT120I	GGNCC	5 cut(s)	12, 191, 857, 912, 1134
BmiI	GGNNCC	4 cut(s)	457, 833, 913, 1135
BmrFI	CCNGG	6 cut(s)	189, 195, 453, 651, 663, 1275
BmrI	ACTGGG	1 cut(s)	951
BmsI	GCATC	2 cut(s)	183, 1121
BmuI	ACTGGG	1 cut(s)	951
BpmI	CTGGAG	4 cut(s)	171, 442, 1077, 1257
BpuEI	CTTGAG	2 cut(s)	676, 960
BsaI	GGTCTC	2 cut(s)	316, 1167
BsaJI	CCNNGG	4 cut(s)	134, 178, 661, 1137
Bsc4I	CCNNNNNNNGG	6 cut(s)	194, 476, 548, 587, 614, 668
Bse1I	ACTGG	4 cut(s)	459, 581, 946, 1060
Bse3DI	GCAATG	1 cut(s)	972
BseBI	CCWGG	6 cut(s)	189, 195, 453, 651, 663, 1275
BseDI	CCNNGG	4 cut(s)	134, 178, 661, 1137
BseGI	GGATG	4 cut(s)	114, 145, 174, 295
BseLI	CCNNNNNNNGG	6 cut(s)	194, 476, 548, 587, 614, 668
BseMI	GCAATG	1 cut(s)	972
BseMII	CTCAG	3 cut(s)	485, 542, 834
BseNI	ACTGG	4 cut(s)	459, 581, 946, 1060
BseSI	GKGCMC	1 cut(s)	1092
BseXI	GCAGC	2 cut(s)	183, 1096
BseYI	CCCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	3 cut(s)	21, 198, 955
BsiHKAI	GWGCWC	1 cut(s)	28
BslFI	GGGAC	3 cut(s)	292, 925, 1202
BslI	CCNNNNNNNGG	6 cut(s)	194, 476, 548, 587, 614, 668
BsmAI	GTCTC	4 cut(s)	316, 831, 1167, 1300
BsmFI	GGGAC	3 cut(s)	292, 925, 1202
BsnI	GGCC	3 cut(s)	21, 198, 955
Bso31I	GGTCTC	2 cut(s)	316, 1167
Bsp1286I	GDGCHC	3 cut(s)	28, 662, 1092
Bsp143I	GATC	4 cut(s)	7, 307, 899, 1187
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	5 cut(s)	68, 199, 786, 981, 1239
BspANI	GGCC	3 cut(s)	21, 198, 955
BspCNI	CTCAG	3 cut(s)	486, 541, 833
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	4 cut(s)	457, 833, 913, 1135
BspPI	GGATC	1 cut(s)	907
BspTI	CTTAAG	1 cut(s)	383
BspTNI	GGTCTC	2 cut(s)	316, 1167
BsrDI	GCAATG	1 cut(s)	972
BsrI	ACTGG	4 cut(s)	459, 581, 946, 1060
BssECI	CCNNGG	4 cut(s)	134, 178, 661, 1137
BssMI	GATC	4 cut(s)	7, 307, 899, 1187
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	3 cut(s)	134, 178, 1137
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	6 cut(s)	189, 195, 453, 651, 663, 1275
Bst4CI	ACNGT	4 cut(s)	238, 1040, 1076, 1311
Bst6I	CTCTTC	1 cut(s)	354
BstAFI	CTTAAG	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	429, 512
BstDEI	CTNAG	4 cut(s)	494, 528, 820, 1263
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	4 cut(s)	114, 145, 174, 295
BstKTI	GATC	4 cut(s)	10, 310, 902, 1190
BstMAI	GTCTC	4 cut(s)	316, 831, 1167, 1300
BstMBI	GATC	4 cut(s)	7, 307, 899, 1187
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 171, 971
BstNI	CCWGG	6 cut(s)	189, 195, 453, 651, 663, 1275
BstSCI	CCNGG	6 cut(s)	187, 193, 451, 649, 661, 1273
BstSLI	GKGCMC	1 cut(s)	1092
BstV1I	GCAGC	2 cut(s)	183, 1096
BsuI	GTATCC	1 cut(s)	473
BsuRI	GGCC	3 cut(s)	21, 198, 955
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	4 cut(s)	114, 145, 174, 295
BtsI	GCAGTG	2 cut(s)	172, 372
BtsIMutI	CAGTG	5 cut(s)	172, 234, 372, 828, 1081
Cac8I	GCNNGC	2 cut(s)	429, 512
CaiI	CAGNNNCTG	3 cut(s)	194, 587, 1250
CciI	TCATGA	1 cut(s)	394
Cfr13I	GGNCC	5 cut(s)	12, 191, 857, 912, 1134
CseI	GACGC	2 cut(s)	64, 219
Csp6I	GTAC	1 cut(s)	927
CviAII	CATG	2 cut(s)	179, 395
CviQI	GTAC	1 cut(s)	927
DdeI	CTNAG	4 cut(s)	494, 528, 820, 1263
DpnI	GATC	4 cut(s)	9, 309, 901, 1189
DpnII	GATC	4 cut(s)	7, 307, 899, 1187
DrdI	GACNNNNNNGTC	1 cut(s)	864
DseDI	GACNNNNNNGTC	1 cut(s)	864
EaeI	YGGCCR	2 cut(s)	196, 953
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	996
Eco130I	CCWWGG	3 cut(s)	134, 178, 1137
Eco24I	GRGCYC	1 cut(s)	662
Eco31I	GGTCTC	2 cut(s)	316, 1167
Eco47I	GGWCC	5 cut(s)	12, 191, 857, 912, 1134
Eco57I	CTGAAG	1 cut(s)	945
EcoO109I	RGGNCCY	2 cut(s)	191, 1134
EcoRII	CCWGG	6 cut(s)	187, 193, 451, 649, 661, 1273
EcoT14I	CCWWGG	3 cut(s)	134, 178, 1137
EcoT38I	GRGCYC	1 cut(s)	662
ErhI	CCWWGG	3 cut(s)	134, 178, 1137
FaeI	CATG	2 cut(s)	182, 398
FaqI	GGGAC	3 cut(s)	292, 925, 1202
FatI	CATG	2 cut(s)	178, 394
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	4 cut(s)	172, 199, 1110, 1240
FokI	GGATG	4 cut(s)	121, 152, 161, 302
FriOI	GRGCYC	1 cut(s)	662
Fsp4HI	GCNGC	4 cut(s)	172, 199, 1110, 1240
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	4 cut(s)	172, 199, 1110, 1240
GsaI	CCCAGC	1 cut(s)	62
GsuI	CTGGAG	4 cut(s)	171, 442, 1077, 1257
HaeIII	GGCC	3 cut(s)	21, 198, 955
HgaI	GACGC	2 cut(s)	64, 219
Hin1II	CATG	2 cut(s)	182, 398
HinfI	GANTC	4 cut(s)	339, 353, 573, 730
HphI	GGTGA	1 cut(s)	441
Hpy166II	GTNNAC	3 cut(s)	234, 370, 857
Hpy188I	TCNGA	7 cut(s)	12, 55, 358, 495, 831, 1201, 1252
Hpy188III	TCNNGA	3 cut(s)	256, 395, 903
Hpy8I	GTNNAC	3 cut(s)	234, 370, 857
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	4 cut(s)	238, 1040, 1076, 1311
HpyCH4V	TGCA	4 cut(s)	431, 680, 1082, 1112
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 171, 971
HpyF3I	CTNAG	4 cut(s)	494, 528, 820, 1263
Hsp92II	CATG	2 cut(s)	182, 398
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	7, 307, 899, 1187
LmnI	GCTCC	1 cut(s)	461
Lsp1109I	GCAGC	2 cut(s)	183, 1096
LweI	GCATC	2 cut(s)	183, 1121
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	238, 248
MalI	GATC	4 cut(s)	9, 309, 901, 1189
MboI	GATC	4 cut(s)	7, 307, 899, 1187
MboII	GAAGA	6 cut(s)	371, 421, 798, 951, 1080, 1092
MhlI	GDGCHC	3 cut(s)	28, 662, 1092
MlsI	TGGCCA	1 cut(s)	955
MluCI	AATT	9 cut(s)	630, 640, 682, 748, 880, 949, 1159, 1164, 1195
MluNI	TGGCCA	1 cut(s)	955
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	1 cut(s)	199
Mox20I	TGGCCA	1 cut(s)	955
MscI	TGGCCA	1 cut(s)	955
MseI	TTAA	4 cut(s)	384, 516, 870, 1299
Msp20I	TGGCCA	1 cut(s)	955
MspCI	CTTAAG	1 cut(s)	383
MspR9I	CCNGG	6 cut(s)	189, 195, 453, 651, 663, 1275
MvaI	CCWGG	6 cut(s)	189, 195, 453, 651, 663, 1275
MwoI	GCNNNNNNNGC	3 cut(s)	125, 171, 971
NcoI	CCATGG	1 cut(s)	178
NdeII	GATC	4 cut(s)	7, 307, 899, 1187
NlaIII	CATG	2 cut(s)	182, 398
NlaIV	GGNNCC	4 cut(s)	457, 833, 913, 1135
NmuCI	GTSAC	2 cut(s)	238, 248
PagI	TCATGA	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	339, 353, 573
PflFI	GACNNNGTC	1 cut(s)	74
PflMI	CCANNNNNTGG	3 cut(s)	194, 587, 668
PkrI	GCNGC	4 cut(s)	173, 200, 1111, 1241
PleI	GAGTC	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	738
PpuMI	RGGWCCY	2 cut(s)	191, 1134
PsiI	TTATAA	1 cut(s)	687
Psp5II	RGGWCCY	2 cut(s)	191, 1134
Psp6I	CCWGG	6 cut(s)	187, 193, 451, 649, 661, 1273
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	6 cut(s)	187, 193, 451, 649, 661, 1273
PspN4I	GGNNCC	4 cut(s)	457, 833, 913, 1135
PspPI	GGNCC	5 cut(s)	12, 191, 857, 912, 1134
PspPPI	RGGWCCY	2 cut(s)	191, 1134
PstNI	CAGNNNCTG	3 cut(s)	194, 587, 1250
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	928
RsaNI	GTAC	1 cut(s)	927
SaqAI	TTAA	4 cut(s)	384, 516, 870, 1299
SatI	GCNGC	4 cut(s)	172, 199, 1110, 1240
Sau3AI	GATC	4 cut(s)	7, 307, 899, 1187
Sau96I	GGNCC	5 cut(s)	12, 191, 857, 912, 1134
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	6 cut(s)	189, 195, 453, 651, 663, 1275
SduI	GDGCHC	3 cut(s)	28, 662, 1092
SfaNI	GCATC	2 cut(s)	183, 1121
SinI	GGWCC	5 cut(s)	12, 191, 857, 912, 1134
SmlI	CTYRAG	3 cut(s)	383, 655, 975
SmoI	CTYRAG	3 cut(s)	383, 655, 975
Sse9I	AATT	9 cut(s)	630, 640, 682, 748, 880, 949, 1159, 1164, 1195
SsiI	CCGC	5 cut(s)	68, 199, 786, 981, 1239
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	6 cut(s)	187, 193, 451, 649, 661, 1273
StyI	CCWWGG	3 cut(s)	134, 178, 1137
TaaI	ACNGT	4 cut(s)	238, 1040, 1076, 1311
TaqI	TCGA	1 cut(s)	1128
TasI	AATT	9 cut(s)	630, 640, 682, 748, 880, 949, 1159, 1164, 1195
TatI	WGTACW	1 cut(s)	926
TauI	GCSGC	2 cut(s)	201, 1242
TfiI	GAWTC	3 cut(s)	339, 353, 573
Tru1I	TTAA	4 cut(s)	384, 516, 870, 1299
Tru9I	TTAA	4 cut(s)	384, 516, 870, 1299
TscAI	CASTG	5 cut(s)	172, 241, 372, 828, 1081
TseFI	GTSAC	2 cut(s)	238, 248
TseI	GCWGC	2 cut(s)	171, 1109
Tsp45I	GTSAC	2 cut(s)	238, 248
TspDTI	ATGAA	7 cut(s)	17, 331, 383, 411, 653, 722, 1092
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	5 cut(s)	172, 241, 372, 828, 1081
Tth111I	GACNNNGTC	1 cut(s)	74
Van91I	CCANNNNNTGG	3 cut(s)	194, 587, 668
Vha464I	CTTAAG	1 cut(s)	383
VpaK11BI	GGWCC	5 cut(s)	12, 191, 857, 912, 1134
XapI	RAATTY	2 cut(s)	880, 1195
XmaJI	CCTAGG	1 cut(s)	134
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.