MD17G1111500.v1.1

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
9563478 .. 9568900
5423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1111500.v1.1.491

Sequence Viewer

Length: 1455 bp
ATGCAATCCGACAGTGGTAAGTTGTTTATCGGCGGCATATCTTGGGATACAAATGAGGAGCGGCTGAAAGAGTATTTCAGCAGCTTCGGGGAGGTGGTAGAGGCTGTGATCATGAAGGATCGGACCACAGGCCGTGCTCGTGGGTTTGGTTTTGTAGTATTTTCTGACCCAGCTGTGGCGGACAATGTTATAATGGAGAAGCACAACATCGGTGGAAGGATGGTTGAGGCAAAGAAGGCTGTTCCCAGGGATGACCAGAATATTTTGGGTAGAAGCAGTGGCAGCATCCAGGGTTCTCCAGGTCCAGGTCGCACAAGAAAGATTTTTGTTGGAGGTTTAGCATCCACTGTCACGGAGAGTGACTTCAAGAAGTACTTTGAACAGTTTGGAACAATCACGGATGTTGTGGTGATGTATGATCACAACACCCAGAGGCCGAGAGGCTTTGGATTCATCACTTACGATTCTGAGGATGCAGTGGACAAGGTTTTGCTTAAGACATTTCATGAACTGAATGGGAAAATGGTTGAGGTCAAGCGAGCAGTTCCGAAGGAGTTATCACCTGGTCCCAGTCGCAGCCCTCTTGGAGGATACAACTATGGTCTGAGTAGGGTCAATAGCTTCCTTAATGGCTACACTCAGGGGTATAATCCAAGTACAGTTGGAGGCTATGGACTTGGAAGATACAGTCCAGTTGCAGGTGGTCGAACTGGATTTCCTCCATATGGTTCTGGTTATGGAATTGGTATCAATTATGAGCCAGGTTTGAGCCCAGGATTTGGTGGAAATGCAAACTTTAATAGTACTATGAGCTACGGGCGGGGTTTGAGTCCTTATTATATCAATGTTTCAAATAGGTTTAGCAGCCCCATTGGGTATGATGGCAATAATGGAGGAAACACATCTTCGTTTTTCAGCTCAGAGACTCAGAACTTGTGGGGGAATGGGAATGGGAATGGGAATGGGGGTGGTCTTAATTATGGAACAAACTCCACAAATGGCAATGCTTACATTGGATCAGGAAGTGGGACCATTGGAGGACGTACGTTTGGAAATTCTGGAGCTAATTGGCCTTCTTCAGCAATGTCAGCTCAAGGCGGAGGAAATAATGTTACTAACAATAGCAGGAATCTTGGTTACGGAGTCAGGGATAGCAGTTACGGTCTGGGAAGTGGAGGGTATGGAAGAAACAGTGGTGCAAGTGTGGCCCCAACGTCTTCATTTGCTGCATCAAATGGTGGTGGTTTTGATGGTTCCTTGGCTGACTTTTACAGTAGTAATTCCGTTTATGGAGACCCTACTTGGAGATCATCAAATTCTGATCAAGATGGACCTGGTCCCTTTGGTTATGGGCTTGGCAGAGCAGCCTCTGATGTTTCAGCTAAAAGTTCTCCTGGTTATGTTGGTGGTTATAGTGTTAATAAGAGACAGCCAAATACAGGAATTGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

485

Amino Acids

50.62

Weight (kDa)

9.01

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 8 - 68 1.2e-15 RNA recognition motif
RRM_7 PF16367 106 - 176 1.9e-06 RNA recognition motif
RRM_1 PF00076 108 - 165 5.1e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 191
AarI CACCTGC 1 cut(s) 689
Acc36I ACCTGC 1 cut(s) 689
AccB7I CCANNNNNTGG 1 cut(s) 779
AccBSI CCGCTC 1 cut(s) 61
AciI CCGC 5 cut(s) 33, 61, 179, 820, 1098
AclWI GGATC 2 cut(s) 126, 1024
AcsI RAATTY 2 cut(s) 1054, 1315
AcuI CTGAAG 1 cut(s) 1062
AfaI GTAC 4 cut(s) 374, 658, 805, 1045
AfiI CCNNNNNNNGG 7 cut(s) 175, 305, 587, 698, 725, 779, 1439
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 3 cut(s) 367, 380, 852
AjnI CCWGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1333, 1393
AloI GAACNNNNNNTCC 2 cut(s) 700, 732
AluBI AGCT 8 cut(s) 84, 173, 621, 813, 918, 1064, 1091, 1382
AluI AGCT 8 cut(s) 84, 173, 621, 813, 918, 1064, 1091, 1382
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 3 cut(s) 917, 1287, 1420
AlwI GGATC 2 cut(s) 126, 1024
AlwNI CAGNNNCTG 1 cut(s) 1370
AoxI GGCC 4 cut(s) 130, 434, 1070, 1206
ApeKI GCWGC 7 cut(s) 81, 282, 576, 864, 1226, 1364, 1448
ApoI RAATTY 2 cut(s) 1054, 1315
AspS9I GGNCC 7 cut(s) 123, 302, 566, 1029, 1207, 1331, 1337
AsuHPI GGTGA 2 cut(s) 421, 552
AvaII GGWCC 6 cut(s) 123, 302, 566, 1029, 1331, 1337
BanII GRGCYC 1 cut(s) 773
BauI CACGAG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 1209
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 7 cut(s) 93, 294, 588, 876, 1213, 1376, 1435
BccI CCATC 4 cut(s) 214, 875, 1244, 1322
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1335, 1395
BciVI GTATCC 2 cut(s) 40, 584
BclI TGATCA 3 cut(s) 108, 418, 1321
BcoDI GTCTC 3 cut(s) 917, 1287, 1420
BfaI CTAG 1 cut(s) 1453
BfrI CTTAAG 1 cut(s) 494
BfuAI ACCTGC 1 cut(s) 689
BfuI GTATCC 2 cut(s) 40, 584
BisI GCNGC 9 cut(s) 34, 62, 82, 283, 577, 865, 1227, 1365, 1449
BlsI GCNGC 9 cut(s) 35, 63, 83, 284, 578, 866, 1228, 1366, 1450
BmcAI AGTACT 2 cut(s) 374, 805
Bme1390I CCNGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1335, 1395
Bme18I GGWCC 6 cut(s) 123, 302, 566, 1029, 1331, 1337
BmgT120I GGNCC 7 cut(s) 123, 302, 566, 1029, 1207, 1331, 1337
BmiI GGNNCC 5 cut(s) 568, 1030, 1209, 1255, 1339
BmrFI CCNGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1335, 1395
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 4 cut(s) 294, 350, 463, 1238
BmuI ACTGGG 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 1209
BpmI CTGGAG 2 cut(s) 282, 1080
BpuEI CTTGAG 1 cut(s) 1077
BsaI GGTCTC 1 cut(s) 1287
BsaJI CCNNGG 5 cut(s) 245, 246, 289, 772, 1257
Bsc4I CCNNNNNNNGG 7 cut(s) 175, 305, 587, 698, 725, 779, 1439
Bse1I ACTGG 3 cut(s) 570, 692, 715
Bse3DI GCAATG 2 cut(s) 1009, 1089
BseBI CCWGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1335, 1395
BseDI CCNNGG 5 cut(s) 245, 246, 289, 772, 1257
BseGI GGATG 6 cut(s) 225, 256, 285, 341, 406, 478
BseLI CCNNNNNNNGG 7 cut(s) 175, 305, 587, 698, 725, 779, 1439
BseMI GCAATG 2 cut(s) 1009, 1089
BseMII CTCAG 5 cut(s) 459, 596, 653, 933, 941
BseNI ACTGG 3 cut(s) 570, 692, 715
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 7 cut(s) 93, 294, 588, 876, 1213, 1376, 1435
BseYI CCCAGC 1 cut(s) 169
BshFI GGCC 4 cut(s) 132, 436, 1072, 1208
BsiHKAI GWGCWC 1 cut(s) 139
BsiWI CGTACG 1 cut(s) 1043
BslFI GGGAC 3 cut(s) 552, 1042, 1323
BslI CCNNNNNNNGG 7 cut(s) 175, 305, 587, 698, 725, 779, 1439
BsmAI GTCTC 3 cut(s) 917, 1287, 1420
BsmFI GGGAC 3 cut(s) 552, 1042, 1323
BsnI GGCC 4 cut(s) 132, 436, 1072, 1208
Bso31I GGTCTC 1 cut(s) 1287
Bsp1286I GDGCHC 2 cut(s) 139, 773
Bsp143I GATC 6 cut(s) 108, 118, 418, 1016, 1307, 1321
BspACI CCGC 5 cut(s) 33, 61, 179, 820, 1098
BspANI GGCC 4 cut(s) 132, 436, 1072, 1208
BspCNI CTCAG 5 cut(s) 460, 597, 652, 932, 940
BspHI TCATGA 2 cut(s) 111, 505
BspLI GGNNCC 5 cut(s) 568, 1030, 1209, 1255, 1339
BspMI ACCTGC 1 cut(s) 689
BspPI GGATC 2 cut(s) 126, 1024
BspTI CTTAAG 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 1287
BsrBI CCGCTC 1 cut(s) 61
BsrDI GCAATG 2 cut(s) 1009, 1089
BsrI ACTGG 3 cut(s) 570, 692, 715
BssECI CCNNGG 5 cut(s) 245, 246, 289, 772, 1257
BssMI GATC 6 cut(s) 108, 118, 418, 1016, 1307, 1321
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 1257
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1335, 1395
Bst4CI ACNGT 8 cut(s) 14, 349, 384, 661, 689, 1163, 1193, 1274
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 5 cut(s) 468, 605, 639, 919, 927
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 6 cut(s) 225, 256, 285, 341, 406, 478
BstKTI GATC 6 cut(s) 111, 121, 421, 1019, 1310, 1324
BstMAI GTCTC 3 cut(s) 917, 1287, 1420
BstMBI GATC 6 cut(s) 108, 118, 418, 1016, 1307, 1321
BstMWI GCNNNNNNNGC 4 cut(s) 236, 282, 1088, 1205
BstNI CCWGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1335, 1395
BstSCI CCNGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1333, 1393
BstV1I GCAGC 7 cut(s) 93, 294, 588, 876, 1213, 1376, 1435
BstV2I GAAGAC 1 cut(s) 1209
BsuI GTATCC 2 cut(s) 40, 584
BsuRI GGCC 4 cut(s) 132, 436, 1072, 1208
BtsCI GGATG 6 cut(s) 225, 256, 285, 341, 406, 478
BtsI GCAGTG 2 cut(s) 283, 483
BtsIMutI CAGTG 5 cut(s) 19, 283, 345, 483, 1198
BveI ACCTGC 1 cut(s) 689
Cac8I GCNNGC 1 cut(s) 540
CaiI CAGNNNCTG 1 cut(s) 1370
CciI TCATGA 2 cut(s) 111, 505
Cfr13I GGNCC 7 cut(s) 123, 302, 566, 1029, 1207, 1331, 1337
CsiI ACCWGGT 2 cut(s) 562, 1333
Csp6I GTAC 4 cut(s) 373, 657, 804, 1044
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 2 cut(s) 112, 506
CviQI GTAC 4 cut(s) 373, 657, 804, 1044
DdeI CTNAG 5 cut(s) 468, 605, 639, 919, 927
DpnI GATC 6 cut(s) 110, 120, 420, 1018, 1309, 1323
DpnII GATC 6 cut(s) 108, 118, 418, 1016, 1307, 1321
EciI GGCGGA 2 cut(s) 194, 1113
Eco130I CCWWGG 1 cut(s) 1257
Eco24I GRGCYC 1 cut(s) 773
Eco31I GGTCTC 1 cut(s) 1287
Eco47I GGWCC 6 cut(s) 123, 302, 566, 1029, 1331, 1337
Eco57I CTGAAG 1 cut(s) 1062
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoRII CCWGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1333, 1393
EcoT14I CCWWGG 1 cut(s) 1257
EcoT38I GRGCYC 1 cut(s) 773
ErhI CCWWGG 1 cut(s) 1257
FaeI CATG 2 cut(s) 115, 509
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 3 cut(s) 552, 1042, 1323
FatI CATG 2 cut(s) 111, 505
FauI CCCGC 1 cut(s) 813
FauNDI CATATG 1 cut(s) 724
FbaI TGATCA 3 cut(s) 108, 418, 1321
Fnu4HI GCNGC 9 cut(s) 34, 62, 82, 283, 577, 865, 1227, 1365, 1449
FokI GGATG 6 cut(s) 232, 263, 272, 328, 413, 485
FriOI GRGCYC 1 cut(s) 773
Fsp4HI GCNGC 9 cut(s) 34, 62, 82, 283, 577, 865, 1227, 1365, 1449
FspBI CTAG 1 cut(s) 1453
GluI GCNGC 9 cut(s) 34, 62, 82, 283, 577, 865, 1227, 1365, 1449
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 2 cut(s) 282, 1080
HaeIII GGCC 4 cut(s) 132, 436, 1072, 1208
Hin1II CATG 2 cut(s) 115, 509
HinfI GANTC 6 cut(s) 450, 464, 829, 925, 1129, 1143
HphI GGTGA 2 cut(s) 421, 552
Hpy166II GTNNAC 1 cut(s) 481
Hpy188III TCNNGA 6 cut(s) 112, 367, 506, 1020, 1059, 1325
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 5 cut(s) 109, 210, 229, 544, 1083
HpyCH4III ACNGT 8 cut(s) 14, 349, 384, 661, 689, 1163, 1193, 1274
HpyCH4IV ACGT 3 cut(s) 1042, 1046, 1214
HpyCH4V TGCA 6 cut(s) 4, 476, 698, 791, 1199, 1229
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 282, 1088, 1205
HpyF3I CTNAG 5 cut(s) 468, 605, 639, 919, 927
HpySE526I ACGT 3 cut(s) 1042, 1046, 1214
Hsp92II CATG 2 cut(s) 115, 509
Ksp22I TGATCA 3 cut(s) 108, 418, 1321
Kzo9I GATC 6 cut(s) 108, 118, 418, 1016, 1307, 1321
LmnI GCTCC 2 cut(s) 58, 1061
Lsp1109I GCAGC 7 cut(s) 93, 294, 588, 876, 1213, 1376, 1435
LweI GCATC 4 cut(s) 294, 350, 463, 1238
MabI ACCWGGT 2 cut(s) 562, 1333
MaeI CTAG 1 cut(s) 1453
MaeII ACGT 3 cut(s) 1042, 1046, 1214
MaeIII GTNAC 5 cut(s) 349, 359, 1111, 1136, 1157
MalI GATC 6 cut(s) 110, 120, 420, 1018, 1309, 1323
MbiI CCGCTC 1 cut(s) 61
MboI GATC 6 cut(s) 108, 118, 418, 1016, 1307, 1321
MboII GAAGA 5 cut(s) 693, 897, 1068, 1197, 1209
MhlI GDGCHC 2 cut(s) 139, 773
MluCI AATT 8 cut(s) 741, 751, 976, 1054, 1066, 1279, 1315, 1443
MlyI GAGTC 3 cut(s) 838, 919, 1152
MmeI TCCRAC 3 cut(s) 33, 310, 643
MseI TTAA 5 cut(s) 495, 627, 798, 975, 1419
MspA1I CMGCKG 1 cut(s) 173
MspCI CTTAAG 1 cut(s) 494
MspR9I CCNGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1335, 1395
MvaI CCWGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1335, 1395
MwoI GCNNNNNNNGC 4 cut(s) 236, 282, 1088, 1205
NdeI CATATG 1 cut(s) 724
NdeII GATC 6 cut(s) 108, 118, 418, 1016, 1307, 1321
NlaIII CATG 2 cut(s) 115, 509
NlaIV GGNNCC 5 cut(s) 568, 1030, 1209, 1255, 1339
NmeAIII GCCGAG 1 cut(s) 462
NmuCI GTSAC 2 cut(s) 349, 359
PagI TCATGA 2 cut(s) 111, 505
PaqCI CACCTGC 1 cut(s) 689
PasI CCCWGGG 1 cut(s) 246
PfeI GAWTC 3 cut(s) 450, 464, 1129
Pfl23II CGTACG 1 cut(s) 1043
PflFI GACNNNGTC 1 cut(s) 1335
PflMI CCANNNNNTGG 1 cut(s) 779
PkrI GCNGC 9 cut(s) 35, 63, 83, 284, 578, 866, 1228, 1366, 1450
PleI GAGTC 3 cut(s) 837, 919, 1151
PpsI GAGTC 3 cut(s) 837, 919, 1151
PsiI TTATAA 1 cut(s) 191
Psp6I CCWGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1333, 1393
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1333, 1393
PspLI CGTACG 1 cut(s) 1043
PspN4I GGNNCC 5 cut(s) 568, 1030, 1209, 1255, 1339
PspPI GGNCC 7 cut(s) 123, 302, 566, 1029, 1207, 1331, 1337
PstNI CAGNNNCTG 1 cut(s) 1370
PsyI GACNNNGTC 1 cut(s) 1335
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 4 cut(s) 374, 658, 805, 1045
RsaNI GTAC 4 cut(s) 373, 657, 804, 1044
SaqAI TTAA 5 cut(s) 495, 627, 798, 975, 1419
SatI GCNGC 9 cut(s) 34, 62, 82, 283, 577, 865, 1227, 1365, 1449
Sau3AI GATC 6 cut(s) 108, 118, 418, 1016, 1307, 1321
Sau96I GGNCC 7 cut(s) 123, 302, 566, 1029, 1207, 1331, 1337
ScaI AGTACT 2 cut(s) 374, 805
SchI GAGTC 3 cut(s) 838, 919, 1152
ScrFI CCNGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1335, 1395
SduI GDGCHC 2 cut(s) 139, 773
SexAI ACCWGGT 2 cut(s) 562, 1333
SfaNI GCATC 4 cut(s) 294, 350, 463, 1238
SinI GGWCC 6 cut(s) 123, 302, 566, 1029, 1331, 1337
SmlI CTYRAG 2 cut(s) 494, 1092
SmoI CTYRAG 2 cut(s) 494, 1092
Sse9I AATT 8 cut(s) 741, 751, 976, 1054, 1066, 1279, 1315, 1443
SsiI CCGC 5 cut(s) 33, 61, 179, 820, 1098
SspI AATATT 1 cut(s) 262
SspMI CTAG 1 cut(s) 1453
StyD4I CCNGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1333, 1393
StyI CCWWGG 1 cut(s) 1257
TaaI ACNGT 8 cut(s) 14, 349, 384, 661, 689, 1163, 1193, 1274
TaiI ACGT 3 cut(s) 1045, 1049, 1217
TaqI TCGA 1 cut(s) 706
TasI AATT 8 cut(s) 741, 751, 976, 1054, 1066, 1279, 1315, 1443
TatI WGTACW 3 cut(s) 372, 656, 803
TauI GCSGC 2 cut(s) 36, 64
TfiI GAWTC 3 cut(s) 450, 464, 1129
Tru1I TTAA 5 cut(s) 495, 627, 798, 975, 1419
Tru9I TTAA 5 cut(s) 495, 627, 798, 975, 1419
TscAI CASTG 5 cut(s) 19, 283, 352, 483, 1198
TseFI GTSAC 2 cut(s) 349, 359
TseI GCWGC 7 cut(s) 81, 282, 576, 864, 1226, 1364, 1448
Tsp45I GTSAC 2 cut(s) 349, 359
TspDTI ATGAA 5 cut(s) 128, 442, 494, 522, 1209
TspGWI ACGGA 4 cut(s) 368, 413, 1155, 1273
TspRI CASTG 5 cut(s) 19, 283, 352, 483, 1198
Tth111I GACNNNGTC 1 cut(s) 1335
Van91I CCANNNNNTGG 1 cut(s) 779
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 6 cut(s) 123, 302, 566, 1029, 1331, 1337
XagI CCTNNNNNAGG 1 cut(s) 585
XapI RAATTY 2 cut(s) 1054, 1315
XspI CTAG 1 cut(s) 1453
ZrmI AGTACT 2 cut(s) 374, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.