MD09G1120600.v1.1

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
9329024 .. 9334782
5759 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1120600.v1.1.491

Sequence Viewer

Length: 1446 bp
ATGCAATCCGATAGTGGTAAGTTGTTTATCGGCGGCATATCTTGGGATACAAATGAGGAGCGGCTAAAAGAGTATTTCAGCAGTTTCGGGGAGGTGGTAGAAGCAGTGATAATGAAGGATCGGACCACAGGCCGTGCTCGTGGTTTTGGTTTTGTAGTTTTTTCTGACCCAGCTGTGGCGGACAGTGTCATAATGGAGAAGCACAACATCGATGGAAGGATGGTTGAAGCGAAAAAGGCTGTTCCCAGGGATGACCAGAATATTTTGGGTAGAAGCAGTGGCAGCATCCAGGGTTCTCCAGGTCCAGGTCGCACAAGAAAGATTTTTGTTGGAGGTTTAGCATCCACTGTCACGGAGAGTGACTTTAAGAAGTACTTTGAACAGTTTGGAACAATCACGGATGTTGTGGTGATGTATGATCACAACACCCAGAGGCCGAGAGGCTTTGGATTCATCACTTATGATTCAGAGGAGGCAGTGGACAGGGTTTTGCTTAAGACATTTCATGAACTGAACGGGAAAATGGTTGAGGTAAAGCGAGCAGTTCCGAAAGAGTTATCACCTGGTCCCAGTCGCAGCCCTCTTGCAGGATACAACTATGGTCTCAGTAGGGTCAGTAGCTTCCTTAGTGGCTACACTCAGGGGTATAATCCAAGTACAGTTGGAGGCTATGGCCTTGGTAGATTCAGTTCAGTTGCAGGTGGTCGAAGTGGATTTCCTCCATATGGTTCTGGTTATGGAATTGGTATGAATTATGAGCCAGGGTTGAGTCCAGGATTTAGTGGAAATGCAAATTTTAATAGTACTATGAGCTATGGGCGGGGTTTGAGTCCTTATTATATCAATAATTCAAATAGGTTTAGCAGCCCCATTGGGTATGATGGCGGTAATGGAGGAAACACATCTTCGTTTTTCAGCTCAGTCACTCGGAACTTGTGGGAGAATGGGAATGGGAATGACGGTGGTCTTAATTATGGAACAAACTCCACAAATGCCAATTCTTACATCGGATCAGGAAGTGGGACCATTGGAGGAAGTACGTTTGGAAATACTGGAAATAATTGGCCTTCTTCAGCAATGTCAGCTCAAGTCGGAGGAAATAATGTTTCTAACAATAGCAGGAATCTTGGTTATGGAGTTGGGGATAACAGTTACAATCTGGGAACTGGAGGGTATGGAAGAAACAGTGGTGCAAGTGTGGCCCCTACATCTTCATTTGCTGCATCAAATGGTGGTTTTGATGGGACCTTCACTGACTTTTACAGTAGCGGTTCAGTATATGGAGATCCTACTTGGCGTTCATCAAATTCCGATCGAGATGGACCTGGTCCCTTTGGTTATGGGCTTGGCGGTGCAGGCTCTGATGTATCAGCTAAAAGTTCTCCTGGTTATGTTGGTGGTTATAGTGTTAATAAGAGACAGCCAAATACAGGTTATCTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

482

Amino Acids

50.66

Weight (kDa)

8.41

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 8 - 69 1e-15 RNA recognition motif
RRM_7 PF16367 106 - 175 2.5e-06 RNA recognition motif
RRM_1 PF00076 108 - 165 6.6e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 689
Acc36I ACCTGC 1 cut(s) 689
AccBSI CCGCTC 1 cut(s) 61
AciI CCGC 7 cut(s) 33, 61, 179, 820, 885, 1269, 1350
AclWI GGATC 3 cut(s) 126, 1018, 1280
AcsI RAATTY 2 cut(s) 793, 1306
AcuI CTGAAG 1 cut(s) 1056
AfaI GTAC 4 cut(s) 374, 658, 805, 1039
AfiI CCNNNNNNNGG 5 cut(s) 175, 305, 587, 725, 1430
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 3 cut(s) 227, 380, 852
AjnI CCWGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1324, 1384
AluBI AGCT 6 cut(s) 173, 621, 813, 918, 1085, 1373
AluI AGCT 6 cut(s) 173, 621, 813, 918, 1085, 1373
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 608, 1411
AlwI GGATC 3 cut(s) 126, 1018, 1280
AlwNI CAGNNNCTG 1 cut(s) 1361
AoxI GGCC 5 cut(s) 130, 434, 673, 1064, 1200
ApeKI GCWGC 4 cut(s) 282, 576, 864, 1220
ApoI RAATTY 2 cut(s) 793, 1306
AspS9I GGNCC 8 cut(s) 123, 302, 566, 1023, 1201, 1245, 1322, 1328
AsuHPI GGTGA 2 cut(s) 421, 552
AvaII GGWCC 7 cut(s) 123, 302, 566, 1023, 1245, 1322, 1328
BauI CACGAG 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 4 cut(s) 294, 588, 876, 1207
BccI CCATC 5 cut(s) 206, 214, 875, 1235, 1313
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1326, 1386
BciVI GTATCC 2 cut(s) 40, 584
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 608, 1411
BfaI CTAG 1 cut(s) 1444
BfrI CTTAAG 1 cut(s) 494
BfuAI ACCTGC 1 cut(s) 689
BfuI GTATCC 2 cut(s) 40, 584
BisI GCNGC 6 cut(s) 34, 62, 283, 577, 865, 1221
BlsI GCNGC 6 cut(s) 35, 63, 284, 578, 866, 1222
BmcAI AGTACT 2 cut(s) 374, 805
Bme1390I CCNGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1326, 1386
Bme18I GGWCC 7 cut(s) 123, 302, 566, 1023, 1245, 1322, 1328
BmgT120I GGNCC 8 cut(s) 123, 302, 566, 1023, 1201, 1245, 1322, 1328
BmiI GGNNCC 5 cut(s) 568, 1024, 1203, 1246, 1330
BmrFI CCNGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1326, 1386
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 3 cut(s) 294, 350, 1232
BmuI ACTGGG 1 cut(s) 564
BoxI GACNNNNGTC 1 cut(s) 963
BpmI CTGGAG 2 cut(s) 282, 1188
BpuEI CTTGAG 1 cut(s) 1071
Bsa29I ATCGAT 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 5 cut(s) 245, 246, 289, 676, 761
Bsc4I CCNNNNNNNGG 5 cut(s) 175, 305, 587, 725, 1430
Bse1I ACTGG 3 cut(s) 570, 1057, 1171
Bse3DI GCAATG 1 cut(s) 1083
BseBI CCWGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1326, 1386
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 5 cut(s) 245, 246, 289, 676, 761
BseGI GGATG 5 cut(s) 225, 256, 285, 341, 406
BseLI CCNNNNNNNGG 5 cut(s) 175, 305, 587, 725, 1430
BseMI GCAATG 1 cut(s) 1083
BseMII CTCAG 3 cut(s) 619, 653, 933
BseNI ACTGG 3 cut(s) 570, 1057, 1171
BseRI GAGGAG 2 cut(s) 71, 485
BseXI GCAGC 4 cut(s) 294, 588, 876, 1207
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 1374
Bsh1285I CGRYCG 1 cut(s) 1315
BshFI GGCC 5 cut(s) 132, 436, 675, 1066, 1202
BshVI ATCGAT 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 1315
BsiHKAI GWGCWC 1 cut(s) 139
BslFI GGGAC 4 cut(s) 552, 1036, 1258, 1314
BslI CCNNNNNNNGG 5 cut(s) 175, 305, 587, 725, 1430
BsmAI GTCTC 2 cut(s) 608, 1411
BsmFI GGGAC 4 cut(s) 552, 1036, 1258, 1314
BsnI GGCC 5 cut(s) 132, 436, 675, 1066, 1202
Bso31I GGTCTC 1 cut(s) 608
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 5 cut(s) 118, 418, 1010, 1285, 1312
BspACI CCGC 7 cut(s) 33, 61, 179, 820, 885, 1269, 1350
BspANI GGCC 5 cut(s) 132, 436, 675, 1066, 1202
BspCNI CTCAG 3 cut(s) 618, 652, 932
BspDI ATCGAT 1 cut(s) 210
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 5 cut(s) 568, 1024, 1203, 1246, 1330
BspMI ACCTGC 1 cut(s) 689
BspPI GGATC 3 cut(s) 126, 1018, 1280
BspTI CTTAAG 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 608
BsrBI CCGCTC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 1083
BsrI ACTGG 3 cut(s) 570, 1057, 1171
BssECI CCNNGG 5 cut(s) 245, 246, 289, 676, 761
BssMI GATC 5 cut(s) 118, 418, 1010, 1285, 1312
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 676
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1326, 1386
Bst4CI ACNGT 8 cut(s) 185, 349, 384, 661, 962, 1151, 1187, 1265
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 540, 1357
BstDEI CTNAG 4 cut(s) 605, 626, 639, 919
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 5 cut(s) 225, 256, 285, 341, 406
BstKTI GATC 5 cut(s) 121, 421, 1013, 1288, 1315
BstMAI GTCTC 2 cut(s) 608, 1411
BstMBI GATC 5 cut(s) 118, 418, 1010, 1285, 1312
BstMCI CGRYCG 1 cut(s) 1315
BstMWI GCNNNNNNNGC 5 cut(s) 236, 282, 1082, 1199, 1356
BstNI CCWGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1326, 1386
BstPAI GACNNNNGTC 1 cut(s) 963
BstSCI CCNGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1324, 1384
BstV1I GCAGC 4 cut(s) 294, 588, 876, 1207
BstX2I RGATCY 1 cut(s) 1285
BstYI RGATCY 1 cut(s) 1285
Bsu15I ATCGAT 1 cut(s) 210
BsuI GTATCC 2 cut(s) 40, 584
BsuRI GGCC 5 cut(s) 132, 436, 675, 1066, 1202
BsuTUI ATCGAT 1 cut(s) 210
BtsCI GGATG 5 cut(s) 225, 256, 285, 341, 406
BtsI GCAGTG 3 cut(s) 111, 283, 483
BtsIMutI CAGTG 7 cut(s) 111, 190, 283, 345, 483, 1192, 1251
BveI ACCTGC 1 cut(s) 689
Cac8I GCNNGC 2 cut(s) 540, 1357
CaiI CAGNNNCTG 1 cut(s) 1361
CciI TCATGA 1 cut(s) 505
Cfr13I GGNCC 8 cut(s) 123, 302, 566, 1023, 1201, 1245, 1322, 1328
ClaI ATCGAT 1 cut(s) 210
CsiI ACCWGGT 2 cut(s) 562, 1324
Csp6I GTAC 4 cut(s) 373, 657, 804, 1038
CviAII CATG 1 cut(s) 506
CviQI GTAC 4 cut(s) 373, 657, 804, 1038
DdeI CTNAG 4 cut(s) 605, 626, 639, 919
DpnI GATC 5 cut(s) 120, 420, 1012, 1287, 1314
DpnII GATC 5 cut(s) 118, 418, 1010, 1285, 1312
EciI GGCGGA 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 676
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 7 cut(s) 123, 302, 566, 1023, 1245, 1322, 1328
Eco57I CTGAAG 1 cut(s) 1056
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 1245
EcoRII CCWGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1324, 1384
EcoT14I CCWWGG 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 1 cut(s) 509
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 4 cut(s) 552, 1036, 1258, 1314
FatI CATG 1 cut(s) 505
FauI CCCGC 1 cut(s) 813
FauNDI CATATG 1 cut(s) 724
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 6 cut(s) 34, 62, 283, 577, 865, 1221
FokI GGATG 5 cut(s) 232, 263, 272, 328, 413
Fsp4HI GCNGC 6 cut(s) 34, 62, 283, 577, 865, 1221
FspBI CTAG 1 cut(s) 1444
GluI GCNGC 6 cut(s) 34, 62, 283, 577, 865, 1221
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 2 cut(s) 282, 1188
HaeIII GGCC 5 cut(s) 132, 436, 675, 1066, 1202
Hin1II CATG 1 cut(s) 509
HinfI GANTC 6 cut(s) 450, 464, 684, 769, 829, 1123
HphI GGTGA 2 cut(s) 421, 552
Hpy166II GTNNAC 1 cut(s) 481
Hpy188III TCNNGA 3 cut(s) 506, 1014, 1316
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 4 cut(s) 109, 210, 1077, 1258
HpyCH4III ACNGT 8 cut(s) 185, 349, 384, 661, 962, 1151, 1187, 1265
HpyCH4IV ACGT 1 cut(s) 1040
HpyCH4V TGCA 7 cut(s) 4, 587, 698, 791, 1193, 1223, 1355
HpyF10VI GCNNNNNNNGC 5 cut(s) 236, 282, 1082, 1199, 1356
HpyF3I CTNAG 4 cut(s) 605, 626, 639, 919
HpySE526I ACGT 1 cut(s) 1040
Hsp92II CATG 1 cut(s) 509
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 5 cut(s) 118, 418, 1010, 1285, 1312
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 4 cut(s) 294, 588, 876, 1207
LweI GCATC 3 cut(s) 294, 350, 1232
MabI ACCWGGT 2 cut(s) 562, 1324
MaeI CTAG 1 cut(s) 1444
MaeII ACGT 1 cut(s) 1040
MaeIII GTNAC 4 cut(s) 349, 359, 922, 1151
MalI GATC 5 cut(s) 120, 420, 1012, 1287, 1314
MbiI CCGCTC 1 cut(s) 61
MboI GATC 5 cut(s) 118, 418, 1010, 1285, 1312
MboII GAAGA 5 cut(s) 897, 1062, 1191, 1203, 1430
MflI RGATCY 1 cut(s) 1285
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 8 cut(s) 741, 751, 793, 847, 970, 997, 1060, 1306
MlyI GAGTC 2 cut(s) 778, 838
MmeI TCCRAC 3 cut(s) 310, 643, 1072
MseI TTAA 5 cut(s) 366, 495, 798, 969, 1410
MspA1I CMGCKG 1 cut(s) 173
MspCI CTTAAG 1 cut(s) 494
MspR9I CCNGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1326, 1386
MvaI CCWGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1326, 1386
MwoI GCNNNNNNNGC 5 cut(s) 236, 282, 1082, 1199, 1356
NdeI CATATG 1 cut(s) 724
NdeII GATC 5 cut(s) 118, 418, 1010, 1285, 1312
NlaIII CATG 1 cut(s) 509
NlaIV GGNNCC 5 cut(s) 568, 1024, 1203, 1246, 1330
NmeAIII GCCGAG 1 cut(s) 462
NmuCI GTSAC 3 cut(s) 349, 359, 922
PagI TCATGA 1 cut(s) 505
PaqCI CACCTGC 1 cut(s) 689
PasI CCCWGGG 1 cut(s) 246
PfeI GAWTC 4 cut(s) 450, 464, 684, 1123
PflFI GACNNNGTC 2 cut(s) 185, 1326
PfoI TCCNGGA 1 cut(s) 772
PkrI GCNGC 6 cut(s) 35, 63, 284, 578, 866, 1222
Ple19I CGATCG 1 cut(s) 1315
PleI GAGTC 2 cut(s) 777, 837
PpsI GAGTC 2 cut(s) 777, 837
PpuMI RGGWCCY 1 cut(s) 1245
PshAI GACNNNNGTC 1 cut(s) 963
Psp5II RGGWCCY 1 cut(s) 1245
Psp6I CCWGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1324, 1384
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1324, 1384
PspN4I GGNNCC 5 cut(s) 568, 1024, 1203, 1246, 1330
PspPI GGNCC 8 cut(s) 123, 302, 566, 1023, 1201, 1245, 1322, 1328
PspPPI RGGWCCY 1 cut(s) 1245
PsrI GAACNNNNNNTAC 2 cut(s) 673, 705
PstNI CAGNNNCTG 1 cut(s) 1361
PsuI RGATCY 1 cut(s) 1285
PsyI GACNNNGTC 2 cut(s) 185, 1326
PvuI CGATCG 1 cut(s) 1315
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 4 cut(s) 374, 658, 805, 1039
RsaNI GTAC 4 cut(s) 373, 657, 804, 1038
SaqAI TTAA 5 cut(s) 366, 495, 798, 969, 1410
SatI GCNGC 6 cut(s) 34, 62, 283, 577, 865, 1221
Sau3AI GATC 5 cut(s) 118, 418, 1010, 1285, 1312
Sau96I GGNCC 8 cut(s) 123, 302, 566, 1023, 1201, 1245, 1322, 1328
ScaI AGTACT 2 cut(s) 374, 805
SchI GAGTC 2 cut(s) 778, 838
ScrFI CCNGG 9 cut(s) 247, 290, 300, 306, 564, 762, 774, 1326, 1386
SduI GDGCHC 1 cut(s) 139
SexAI ACCWGGT 2 cut(s) 562, 1324
SfaNI GCATC 3 cut(s) 294, 350, 1232
SinI GGWCC 7 cut(s) 123, 302, 566, 1023, 1245, 1322, 1328
SmlI CTYRAG 2 cut(s) 494, 1086
SmoI CTYRAG 2 cut(s) 494, 1086
Sse9I AATT 8 cut(s) 741, 751, 793, 847, 970, 997, 1060, 1306
SsiI CCGC 7 cut(s) 33, 61, 179, 820, 885, 1269, 1350
SspI AATATT 1 cut(s) 262
SspMI CTAG 1 cut(s) 1444
StyD4I CCNGG 9 cut(s) 245, 288, 298, 304, 562, 760, 772, 1324, 1384
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 8 cut(s) 185, 349, 384, 661, 962, 1151, 1187, 1265
TaiI ACGT 1 cut(s) 1043
TaqI TCGA 3 cut(s) 210, 706, 1315
TasI AATT 8 cut(s) 741, 751, 793, 847, 970, 997, 1060, 1306
TatI WGTACW 3 cut(s) 372, 656, 803
TauI GCSGC 2 cut(s) 36, 64
TfiI GAWTC 4 cut(s) 450, 464, 684, 1123
Tru1I TTAA 5 cut(s) 366, 495, 798, 969, 1410
Tru9I TTAA 5 cut(s) 366, 495, 798, 969, 1410
TscAI CASTG 7 cut(s) 111, 190, 283, 352, 483, 1192, 1258
TseFI GTSAC 3 cut(s) 349, 359, 922
TseI GCWGC 4 cut(s) 282, 576, 864, 1220
Tsp45I GTSAC 3 cut(s) 349, 359, 922
TspDTI ATGAA 7 cut(s) 128, 442, 494, 522, 764, 1203, 1290
TspGWI ACGGA 2 cut(s) 368, 413
TspRI CASTG 7 cut(s) 111, 190, 283, 352, 483, 1192, 1258
Tth111I GACNNNGTC 2 cut(s) 185, 1326
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 7 cut(s) 123, 302, 566, 1023, 1245, 1322, 1328
XagI CCTNNNNNAGG 1 cut(s) 585
XapI RAATTY 2 cut(s) 793, 1306
XspI CTAG 1 cut(s) 1444
ZrmI AGTACT 2 cut(s) 374, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.