Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002028

Physical Location & Seq

Genomic Coordinates Forward (+)

74927573 .. 74931426

Gene Structure 3854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG522100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCGAAAAAGGCTGTCCCTAGGGATGACCAGAACATTTTGAGTAGAGGCAGTGTGAGCATCCAAGGTTCTCCAGGTCCAGGCCGCACAAGAAAGATTTTTGTTGGAGGTTTAGCATCCACTGTCACAGAGGGTGACTTCAAGAAGTACTTTGAACAGTTTGGGACAATCACAGATGTTGTAGTGATGTATGATCATAACACGCAGAGGCCTAGGGGCTTTGGATTCATCACTTATGACTCAGAGGAGGCAGTGGATAAGGTTTTGCTCAAGACTTTTCATGAACTGAATGGGAAGATGGTTGAAGTCAAGCGTGCGGTTCCTAAAGAGTTATCACCTGGACCCAGTCGCAGCCCACTTGGAGGATATAACTATGGTCTGAGTAGGGTCAACAGCTTCCTTAATGGCTATACTCAGGGATATACTCCAAGTACAGTCGGAGGCTTTGGTCTTGGTAGATTTAGTCCAGTTGCTGGTGGTCGAAGTGGGTTTCCTCCATTTGGTTCAGGTTATGGAGTGGGAATGAATTTTGAGCCTGGTTTGAACCCAGGTTTTGGAGGAAGTGCAAATTATAATAGTAATGTCAGCTATGGGCGTGGAGTGAGCCCTTATTATATGAATAATTCAAATAGGTTTAGCAGTCCCATTGGGTATGATGGTGGTAATGGAGGAAACTCATCCTTTTTCAGCTCTGTGACTCGGAGTTTGTGGGGGAATGGGGGGCTTAATACAAATTCTGCAAATTCGAGTGCTTACATGGGTTCAGGAAGTGGGACCATTGGAGGAAGCACATTTGGCAATACTGGGGTTAACTGGCGGTCTTCGGCAATTTCACCTCAAGGTGGAGGAAATAATGTTTCTAACAATAGTGGGAATCTTGGTTATGGAGGCGGTGATAACACTTATGGTTTGGGAACGGGAGGGTATGGAAGGAACAGTGGTACAAGTGTAGGCCCTGCGTCTTCATTTAATGCATCAAATGGTGGTTTTGATGGAGCCTTCAATGACTTTTACAGTAGTGGTTCAGTTTATGGAGATCCCACTTGGCGATCCTCAAATTCCGAGCGAGATGGGCCTGGACCCTTTGGTTATGGACTTGGCAGTGCAGCTTCTGACGTTTCAGCTAAAAGTTCTCCTGGTTATGTTGGTGGATATAGTGTTAATAAGAGACAGTCAAATACAGGAATTGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

409

Amino Acids

42.36

Weight (kDa)

9.31

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	42 - 112	2.5e-06	RNA recognition motif
RRM_1	PF00076	44 - 101	1e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07810 AT3G07810
fragaria_vesca	FvH4_6g41280 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320
malus_domestica	MD09G1120600.v1.1 MD09G1121100.v1.1 MD17G1111500.v1.1 MD17G1112100.v1.1
prunus_persica	Prupe.3G202600_v2.0.a1 Prupe.3G202600_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1
pyrus_communis	pycom09g04550 pycom17g10350 pycom17g10380
rosa_chinensis	RchiOBHm_Chr2g0156821 RchiOBHm_Chr2g0156871
rosa_laevigata	RLG00000020945 RLG00000020948
rosa_multiflora	Rmu_co8440963.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092640 Rroxscaffold_2G00092680
rosa_rugosa	Rorug02G0456400 Rorug02G0456500 Rorug02G0456800 Rorug02G0456800 Rorug02G0456800 Rorug02G0456900 Rorug02G0456900 Rorug02G0456900
rosa_samantha	Rh2AG522100 Rh2AG522400 Rh2BG535500 Rh2BG535700 Rh2CG507000 Rh2CG507300 Rh2DG544500 Rh2DG544700
rosa_wichuraiana	Rw2G043110 Rw2G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AccB7I	CCANNNNNTGG	2 cut(s)	506, 587
AciI	CCGC	4 cut(s)	118, 350, 850, 924
AclWI	GGATC	2 cut(s)	1064, 1077
AcsI	RAATTY	4 cut(s)	559, 766, 775, 1090
AfaI	GTAC	3 cut(s)	182, 466, 976
AfiI	CCNNNNNNNGG	6 cut(s)	113, 395, 506, 533, 587, 875
AgsI	TTSAA	6 cut(s)	175, 188, 338, 577, 660, 1036
AjnI	CCWGG	7 cut(s)	106, 112, 370, 568, 580, 1108, 1168
AluBI	AGCT	5 cut(s)	429, 621, 723, 1142, 1157
AluI	AGCT	5 cut(s)	429, 621, 723, 1142, 1157
Alw26I	GTCTC	1 cut(s)	1195
AlwI	GGATC	2 cut(s)	1064, 1077
AlwNI	CAGNNNCTG	2 cut(s)	506, 1145
AoxI	GGCC	4 cut(s)	115, 242, 985, 1106
ApeKI	GCWGC	3 cut(s)	384, 1139, 1223
ApoI	RAATTY	4 cut(s)	559, 766, 775, 1090
ArsI	GACNNNNNNTTYG	2 cut(s)	721, 753
AspA2I	CCTAGG	2 cut(s)	53, 245
AspS9I	GGNCC	6 cut(s)	110, 374, 807, 986, 1106, 1112
AsuHPI	GGTGA	4 cut(s)	179, 360, 858, 938
AvaII	GGWCC	4 cut(s)	110, 374, 807, 1112
AvrII	CCTAGG	2 cut(s)	53, 245
BaeI	ACNNNNGTAYC	2 cut(s)	966, 999
BanII	GRGCYC	1 cut(s)	641
BbsI	GAAGAC	2 cut(s)	846, 987
BbvI	GCAGC	3 cut(s)	396, 1151, 1210
BccI	CCATC	5 cut(s)	22, 325, 683, 1019, 1097
BciT130I	CCWGG	7 cut(s)	108, 114, 372, 570, 582, 1110, 1170
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	1195
BfaI	CTAG	3 cut(s)	54, 246, 1228
BisI	GCNGC	4 cut(s)	118, 385, 1140, 1224
BlnI	CCTAGG	2 cut(s)	53, 245
BlsI	GCNGC	4 cut(s)	119, 386, 1141, 1225
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	7 cut(s)	108, 114, 372, 570, 582, 1110, 1170
Bme18I	GGWCC	4 cut(s)	110, 374, 807, 1112
BmgT120I	GGNCC	6 cut(s)	110, 374, 807, 986, 1106, 1112
BmiI	GGNNCC	5 cut(s)	354, 376, 808, 1030, 1114
BmrFI	CCNGG	7 cut(s)	108, 114, 372, 570, 582, 1110, 1170
BmrI	ACTGGG	2 cut(s)	372, 846
BmsI	GCATC	3 cut(s)	102, 158, 1016
BmuI	ACTGGG	2 cut(s)	372, 846
BpiI	GAAGAC	2 cut(s)	846, 987
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	287, 855
BsaJI	CCNNGG	4 cut(s)	53, 97, 245, 580
Bsc4I	CCNNNNNNNGG	6 cut(s)	113, 395, 506, 533, 587, 875
Bse1I	ACTGG	4 cut(s)	378, 500, 841, 851
BseBI	CCWGG	7 cut(s)	108, 114, 372, 570, 582, 1110, 1170
BseDI	CCNNGG	4 cut(s)	53, 97, 245, 580
BseGI	GGATG	5 cut(s)	33, 64, 93, 149, 710
BseLI	CCNNNNNNNGG	6 cut(s)	113, 395, 506, 533, 587, 875
BseMII	CTCAG	3 cut(s)	288, 404, 461
BseNI	ACTGG	4 cut(s)	378, 500, 841, 851
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	3 cut(s)	396, 1151, 1210
BsgI	GTGCAG	1 cut(s)	1158
BshFI	GGCC	4 cut(s)	117, 244, 987, 1108
BslFI	GGGAC	4 cut(s)	35, 211, 660, 820
BslI	CCNNNNNNNGG	6 cut(s)	113, 395, 506, 533, 587, 875
BsmAI	GTCTC	1 cut(s)	1195
BsmFI	GGGAC	4 cut(s)	35, 211, 660, 820
BsnI	GGCC	4 cut(s)	117, 244, 987, 1108
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp143I	GATC	3 cut(s)	226, 1069, 1082
BspACI	CCGC	4 cut(s)	118, 350, 850, 924
BspANI	GGCC	4 cut(s)	117, 244, 987, 1108
BspCNI	CTCAG	3 cut(s)	287, 405, 460
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	5 cut(s)	354, 376, 808, 1030, 1114
BspPI	GGATC	2 cut(s)	1064, 1077
BsrI	ACTGG	4 cut(s)	378, 500, 841, 851
BssECI	CCNNGG	4 cut(s)	53, 97, 245, 580
BssMI	GATC	3 cut(s)	226, 1069, 1082
BssT1I	CCWWGG	3 cut(s)	53, 97, 245
Bst2UI	CCWGG	7 cut(s)	108, 114, 372, 570, 582, 1110, 1170
Bst4CI	ACNGT	6 cut(s)	157, 192, 469, 971, 1049, 1206
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	3 cut(s)	274, 413, 447
BstF5I	GGATG	5 cut(s)	33, 64, 93, 149, 710
BstKTI	GATC	3 cut(s)	229, 1072, 1085
BstMAI	GTCTC	1 cut(s)	1195
BstMBI	GATC	3 cut(s)	226, 1069, 1082
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 90, 828, 1105
BstNI	CCWGG	7 cut(s)	108, 114, 372, 570, 582, 1110, 1170
BstSCI	CCNGG	7 cut(s)	106, 112, 370, 568, 580, 1108, 1168
BstV1I	GCAGC	3 cut(s)	396, 1151, 1210
BstV2I	GAAGAC	2 cut(s)	846, 987
BstX2I	RGATCY	1 cut(s)	1069
BstYI	RGATCY	1 cut(s)	1069
BsuRI	GGCC	4 cut(s)	117, 244, 987, 1108
BtsCI	GGATG	5 cut(s)	33, 64, 93, 149, 710
BtsI	GCAGTG	3 cut(s)	91, 291, 1141
BtsIMutI	CAGTG	5 cut(s)	91, 153, 291, 976, 1141
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	2 cut(s)	506, 1145
CciI	TCATGA	1 cut(s)	313
Cfr13I	GGNCC	6 cut(s)	110, 374, 807, 986, 1106, 1112
CseI	GACGC	1 cut(s)	981
Csp6I	GTAC	3 cut(s)	181, 465, 975
CviAII	CATG	2 cut(s)	314, 790
CviQI	GTAC	3 cut(s)	181, 465, 975
DdeI	CTNAG	3 cut(s)	274, 413, 447
DpnI	GATC	3 cut(s)	228, 1071, 1084
DpnII	GATC	3 cut(s)	226, 1069, 1082
Eco130I	CCWWGG	3 cut(s)	53, 97, 245
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	641
Eco47I	GGWCC	4 cut(s)	110, 374, 807, 1112
EcoO109I	RGGNCCY	1 cut(s)	986
EcoRII	CCWGG	7 cut(s)	106, 112, 370, 568, 580, 1108, 1168
EcoT14I	CCWWGG	3 cut(s)	53, 97, 245
EcoT22I	ATGCAT	1 cut(s)	1009
EcoT38I	GRGCYC	1 cut(s)	641
ErhI	CCWWGG	3 cut(s)	53, 97, 245
FaeI	CATG	2 cut(s)	317, 793
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	4 cut(s)	35, 211, 660, 820
FatI	CATG	2 cut(s)	313, 789
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	4 cut(s)	118, 385, 1140, 1224
FokI	GGATG	5 cut(s)	40, 71, 80, 136, 697
FriOI	GRGCYC	1 cut(s)	641
Fsp4HI	GCNGC	4 cut(s)	118, 385, 1140, 1224
FspBI	CTAG	3 cut(s)	54, 246, 1228
GluI	GCNGC	4 cut(s)	118, 385, 1140, 1224
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	4 cut(s)	117, 244, 987, 1108
HgaI	GACGC	1 cut(s)	981
Hin1II	CATG	2 cut(s)	317, 793
HincII	GTYRAC	2 cut(s)	424, 844
HindII	GTYRAC	2 cut(s)	424, 844
HinfI	GANTC	4 cut(s)	258, 272, 730, 907
HpaI	GTTAAC	1 cut(s)	844
HphI	GGTGA	4 cut(s)	179, 360, 858, 938
Hpy166II	GTNNAC	2 cut(s)	424, 844
Hpy188I	TCNGA	6 cut(s)	277, 414, 473, 735, 1096, 1147
Hpy188III	TCNNGA	4 cut(s)	175, 304, 314, 798
Hpy8I	GTNNAC	2 cut(s)	424, 844
HpyAV	CCTTC	3 cut(s)	18, 957, 1042
HpyCH4III	ACNGT	6 cut(s)	157, 192, 469, 971, 1049, 1206
HpyCH4IV	ACGT	1 cut(s)	1149
HpyCH4V	TGCA	4 cut(s)	599, 773, 1007, 1139
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 90, 828, 1105
HpyF3I	CTNAG	3 cut(s)	274, 413, 447
HpySE526I	ACGT	1 cut(s)	1149
Hsp92II	CATG	2 cut(s)	317, 793
Ksp22I	TGATCA	1 cut(s)	226
KspAI	GTTAAC	1 cut(s)	844
Kzo9I	GATC	3 cut(s)	226, 1069, 1082
LmnI	GCTCC	1 cut(s)	1028
Lsp1109I	GCAGC	3 cut(s)	396, 1151, 1210
LweI	GCATC	3 cut(s)	102, 158, 1016
MaeI	CTAG	3 cut(s)	54, 246, 1228
MaeII	ACGT	1 cut(s)	1149
MaeIII	GTNAC	3 cut(s)	157, 167, 727
MalI	GATC	3 cut(s)	228, 1071, 1084
MboI	GATC	3 cut(s)	226, 1069, 1082
MboII	GAAGA	3 cut(s)	340, 846, 987
MflI	RGATCY	1 cut(s)	1069
MhlI	GDGCHC	1 cut(s)	641
MluCI	AATT	8 cut(s)	559, 601, 655, 766, 775, 861, 1090, 1218
MlyI	GAGTC	2 cut(s)	266, 724
MmeI	TCCRAC	2 cut(s)	118, 451
Mph1103I	ATGCAT	1 cut(s)	1009
MseI	TTAA	5 cut(s)	435, 759, 843, 1002, 1194
MspR9I	CCNGG	7 cut(s)	108, 114, 372, 570, 582, 1110, 1170
MvaI	CCWGG	7 cut(s)	108, 114, 372, 570, 582, 1110, 1170
MwoI	GCNNNNNNNGC	4 cut(s)	44, 90, 828, 1105
NdeII	GATC	3 cut(s)	226, 1069, 1082
NlaIII	CATG	2 cut(s)	317, 793
NlaIV	GGNNCC	5 cut(s)	354, 376, 808, 1030, 1114
NmuCI	GTSAC	3 cut(s)	157, 167, 727
NsiI	ATGCAT	1 cut(s)	1009
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	258, 907
PflFI	GACNNNGTC	1 cut(s)	378
PflMI	CCANNNNNTGG	2 cut(s)	506, 587
PkrI	GCNGC	4 cut(s)	119, 386, 1141, 1225
PleI	GAGTC	2 cut(s)	266, 724
PpsI	GAGTC	2 cut(s)	266, 724
PsiI	TTATAA	1 cut(s)	606
Psp6I	CCWGG	7 cut(s)	106, 112, 370, 568, 580, 1108, 1168
PspGI	CCWGG	7 cut(s)	106, 112, 370, 568, 580, 1108, 1168
PspN4I	GGNNCC	5 cut(s)	354, 376, 808, 1030, 1114
PspPI	GGNCC	6 cut(s)	110, 374, 807, 986, 1106, 1112
PstNI	CAGNNNCTG	2 cut(s)	506, 1145
PsuI	RGATCY	1 cut(s)	1069
PsyI	GACNNNGTC	1 cut(s)	378
RsaI	GTAC	3 cut(s)	182, 466, 976
RsaNI	GTAC	3 cut(s)	181, 465, 975
SaqAI	TTAA	5 cut(s)	435, 759, 843, 1002, 1194
SatI	GCNGC	4 cut(s)	118, 385, 1140, 1224
Sau3AI	GATC	3 cut(s)	226, 1069, 1082
Sau96I	GGNCC	6 cut(s)	110, 374, 807, 986, 1106, 1112
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	2 cut(s)	266, 724
ScrFI	CCNGG	7 cut(s)	108, 114, 372, 570, 582, 1110, 1170
SduI	GDGCHC	1 cut(s)	641
SfaNI	GCATC	3 cut(s)	102, 158, 1016
SinI	GGWCC	4 cut(s)	110, 374, 807, 1112
SmlI	CTYRAG	2 cut(s)	302, 870
SmoI	CTYRAG	2 cut(s)	302, 870
Sse9I	AATT	8 cut(s)	559, 601, 655, 766, 775, 861, 1090, 1218
SseBI	AGGCCT	1 cut(s)	244
SsiI	CCGC	4 cut(s)	118, 350, 850, 924
SspMI	CTAG	3 cut(s)	54, 246, 1228
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	7 cut(s)	106, 112, 370, 568, 580, 1108, 1168
StyI	CCWWGG	3 cut(s)	53, 97, 245
TaaI	ACNGT	6 cut(s)	157, 192, 469, 971, 1049, 1206
TaiI	ACGT	1 cut(s)	1152
TaqI	TCGA	2 cut(s)	514, 779
TasI	AATT	8 cut(s)	559, 601, 655, 766, 775, 861, 1090, 1218
TatI	WGTACW	2 cut(s)	180, 464
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	258, 907
Tru1I	TTAA	5 cut(s)	435, 759, 843, 1002, 1194
Tru9I	TTAA	5 cut(s)	435, 759, 843, 1002, 1194
TscAI	CASTG	5 cut(s)	91, 160, 291, 976, 1141
TseFI	GTSAC	3 cut(s)	157, 167, 727
TseI	GCWGC	3 cut(s)	384, 1139, 1223
Tsp45I	GTSAC	3 cut(s)	157, 167, 727
TspDTI	ATGAA	6 cut(s)	250, 302, 330, 572, 665, 987
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	5 cut(s)	91, 160, 291, 976, 1141
Tth111I	GACNNNGTC	1 cut(s)	378
Van91I	CCANNNNNTGG	2 cut(s)	506, 587
VpaK11BI	GGWCC	4 cut(s)	110, 374, 807, 1112
XapI	RAATTY	4 cut(s)	559, 766, 775, 1090
XmaJI	CCTAGG	2 cut(s)	53, 245
XspI	CTAG	3 cut(s)	54, 246, 1228
ZrmI	AGTACT	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.