RLG00000020948

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
70430552 .. 70436311
5760 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020948

Sequence Viewer

Length: 1566 bp
ATGATGTTAAGCAATGTAATTCTTACACGAAGACGGTTGGTGTTTATTTCAACATACGAGTGCCTCCTCTCAGATCTTAATTTTCTTCAAGGTTTGGCATCTGGGTTTTCGTTAATCGGTGTGCTGAATTCAAAAGGAAAAATGCAATCCGATAGTGGCAAGTTATTCATTGGTGGCATATCTTGGGACACAAATGAAGAGCGTCTCAAAGAGTATTTCAGTGCTTTTGGGGAGGTGGTAGAAGCAGTGATCATGAAGGATCGGACCACAGGACGTGCTCGTGGATTTGGTTTTGTAGTTTTTGCAGACCCAGCAGTAGCAGACACTGTCATAATGGAAAAGCACAACATTGATGGAAGAATGGTGGAGGCAAAAAAGGCTGTTCCCAGGGATGACCAGAACACTTTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCAGGTCCAGGACGCACAAGAAAAATATTTGTTGGAGGTTTAGCATCTACTGTTACAGAGAGTGACTTCAAGAAGTACTTTGAACAGTTTGGGACAATTACAGATGTTGTGGTGATGTATGATCACAACACCCAGAGGCCGAGAGGCTTTGGATTCATCACTTATGATTCAGAGGAAGCAGTGGACAAGGTTTTGCTAAAGACATTTCATGAACTGAATGGGAAGATGGTTGAGGTCAAGCGTGCAGTTCCAAAAGAGTTATCACCTGGTCCCAGTCGCAGCCCTCTTGGAGGATACAATTATGGTCTGAGTAGGGTCAATAGCTTCCTTACTGGCTATACTCAGGGGTATAATCCAAGTACGGTTGGAGGTTATGGACTTGGTAGGTTCAGTCCAGTTGCTGGTGGTCGAAGTGGATTTCCTCCATTTGGTTCTGGTTATGGAATGGGAATGAACTTTGAGCCAGGGTTGAGCCCAAGTTTTGGAGGAAATGCAAATTTTAATAATAATGTGAGCTATGGACGGGGATTGAGCCCTTATTATATCAATAATTCAAATAGGTTTAGCAATCCCATTGGATATGATGGTAATAATGGAGGAAGCTCATCCTTTTTTAGCTCAGTGACTCGGAATTTGTGGGGTAATGGGGGTCTTAATACAAATTCTACAAATTCCAGTGCAGCTTACATGGGTTCAGGAAGTGGTAGCATTGGAGGAAGTACATTTGGCAATGCTGGAGTTAATTGGCGTTCTTCAGCAATTTCACCTCAAGGTGGAGGAAATAATGTCTCTAACAATAGTGGGACACTTGGCTATGGAGCTGGTGATAACAGTTATGGCTTGGGAACCGGAGGGTATGGAAGAAACAGTGGTGCAACTGTGGGCCCTACATCTTCTTTTGCTGCATCAAATGGTGGTTTTGAGGGCTCCTTTGCTGACTTCTACAGTAGTGGTTCAGTGTACGGAGATCCTACTTGGAGATCATCAAATTCCGAGCGAGATGGGTCTGGCCCCTTTGGGTATGGGCTTGGCAGTGCAGCTTCTGATGTTTCAGCTAAAAGTTCTCCTGGTTATGTTGGTGGTTATAGTGTTAATAAGAGACAGCCAAATACAGGAATTGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

522

Amino Acids

54.79

Weight (kDa)

9.17

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 55 - 115 1.1e-15 RNA recognition motif
RRM_7 PF16367 153 - 223 2e-06 RNA recognition motif
RRM_1 PF00076 155 - 212 3.7e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 839, 920
AclWI GGATC 2 cut(s) 267, 1400
AcsI RAATTY 6 cut(s) 127, 934, 1069, 1099, 1108, 1426
AcuI CTGAAG 1 cut(s) 1176
AfaI GTAC 4 cut(s) 515, 799, 1159, 1400
AfiI CCNNNNNNNGG 7 cut(s) 446, 728, 839, 866, 920, 1211, 1550
AgsI TTSAA 6 cut(s) 51, 89, 132, 508, 521, 993
AjiI CACGTC 1 cut(s) 275
AjnI CCWGG 6 cut(s) 386, 439, 445, 703, 901, 1504
AluBI AGCT 8 cut(s) 762, 954, 1041, 1056, 1121, 1259, 1478, 1493
AluI AGCT 8 cut(s) 762, 954, 1041, 1056, 1121, 1259, 1478, 1493
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 3 cut(s) 209, 1231, 1531
AlwI GGATC 2 cut(s) 267, 1400
AlwNI CAGNNNCTG 3 cut(s) 326, 839, 1481
AoxI GGCC 3 cut(s) 575, 1321, 1447
ApaI GGGCCC 1 cut(s) 1325
ApeKI GCWGC 6 cut(s) 423, 717, 1118, 1340, 1475, 1559
ApoI RAATTY 6 cut(s) 127, 934, 1069, 1099, 1108, 1426
ArsI GACNNNNNNTTYG 2 cut(s) 1054, 1086
AspS9I GGNCC 6 cut(s) 264, 443, 707, 1321, 1322, 1448
AsuHPI GGTGA 4 cut(s) 562, 693, 1194, 1274
AvaII GGWCC 3 cut(s) 264, 443, 707
BaeGI GKGCMC 1 cut(s) 1325
BanII GRGCYC 4 cut(s) 914, 974, 1325, 1367
BauI CACGAG 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 6 cut(s) 435, 729, 1130, 1327, 1487, 1546
BccI CCATC 4 cut(s) 347, 658, 1016, 1433
BciT130I CCWGG 6 cut(s) 388, 441, 447, 705, 903, 1506
BciVI GTATCC 1 cut(s) 725
BclI TGATCA 2 cut(s) 249, 559
BcoDI GTCTC 3 cut(s) 209, 1231, 1531
BfaI CTAG 1 cut(s) 1564
BfmI CTRYAG 1 cut(s) 1381
BfuI GTATCC 1 cut(s) 725
BglII AGATCT 1 cut(s) 73
BisI GCNGC 6 cut(s) 424, 718, 1119, 1341, 1476, 1560
BlsI GCNGC 6 cut(s) 425, 719, 1120, 1342, 1477, 1561
BmcAI AGTACT 1 cut(s) 515
Bme1390I CCNGG 6 cut(s) 388, 441, 447, 705, 903, 1506
Bme18I GGWCC 3 cut(s) 264, 443, 707
BmgBI CACGTC 1 cut(s) 275
BmgT120I GGNCC 6 cut(s) 264, 443, 707, 1321, 1322, 1448
BmiI GGNNCC 5 cut(s) 709, 1285, 1323, 1366, 1450
BmrFI CCNGG 6 cut(s) 388, 441, 447, 705, 903, 1506
BmrI ACTGGG 1 cut(s) 705
BmsI GCATC 4 cut(s) 107, 435, 491, 1352
BmuI ACTGGG 1 cut(s) 705
BpiI GAAGAC 1 cut(s) 37
BpmI CTGGAG 2 cut(s) 423, 1194
BpuEI CTTGAG 1 cut(s) 1191
BsaJI CCNNGG 4 cut(s) 386, 387, 430, 902
BsaWI WCCGGW 1 cut(s) 1286
Bsc4I CCNNNNNNNGG 7 cut(s) 446, 728, 839, 866, 920, 1211, 1550
Bse1I ACTGG 4 cut(s) 711, 775, 833, 1113
Bse3DI GCAATG 2 cut(s) 19, 1174
BseBI CCWGG 6 cut(s) 388, 441, 447, 705, 903, 1506
BseDI CCNNGG 4 cut(s) 386, 387, 430, 902
BseGI GGATG 3 cut(s) 397, 426, 1043
BseLI CCNNNNNNNGG 7 cut(s) 446, 728, 839, 866, 920, 1211, 1550
BseMI GCAATG 2 cut(s) 19, 1174
BseMII CTCAG 4 cut(s) 84, 737, 794, 1071
BseNI ACTGG 4 cut(s) 711, 775, 833, 1113
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 1325
BseXI GCAGC 6 cut(s) 435, 729, 1130, 1327, 1487, 1546
BseYI CCCAGC 1 cut(s) 310
BsgI GTGCAG 3 cut(s) 702, 1137, 1494
BshFI GGCC 3 cut(s) 577, 1323, 1449
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 1 cut(s) 1287
BslFI GGGAC 4 cut(s) 200, 544, 693, 1255
BslI CCNNNNNNNGG 7 cut(s) 446, 728, 839, 866, 920, 1211, 1550
BsmAI GTCTC 3 cut(s) 209, 1231, 1531
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 4 cut(s) 200, 544, 693, 1255
BsnI GGCC 3 cut(s) 577, 1323, 1449
Bsp120I GGGCCC 1 cut(s) 1321
Bsp1286I GDGCHC 5 cut(s) 280, 914, 974, 1325, 1367
Bsp143I GATC 6 cut(s) 73, 249, 259, 559, 1405, 1418
Bsp19I CCATGG 1 cut(s) 430
BspANI GGCC 3 cut(s) 577, 1323, 1449
BspCNI CTCAG 4 cut(s) 83, 738, 793, 1070
BspHI TCATGA 2 cut(s) 252, 646
BspLI GGNNCC 5 cut(s) 709, 1285, 1323, 1366, 1450
BspPI GGATC 2 cut(s) 267, 1400
BspQI GCTCTTC 1 cut(s) 192
BsrDI GCAATG 2 cut(s) 19, 1174
BsrI ACTGG 4 cut(s) 711, 775, 833, 1113
BssECI CCNNGG 4 cut(s) 386, 387, 430, 902
BssMI GATC 6 cut(s) 73, 249, 259, 559, 1405, 1418
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 430
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 6 cut(s) 388, 441, 447, 705, 903, 1506
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 681
BstDEI CTNAG 4 cut(s) 70, 746, 780, 1057
BstDSI CCRYGG 1 cut(s) 430
BstENI CCTNNNNNAGG 1 cut(s) 726
BstF5I GGATG 3 cut(s) 397, 426, 1043
BstKTI GATC 6 cut(s) 76, 252, 262, 562, 1408, 1421
BstMAI GTCTC 3 cut(s) 209, 1231, 1531
BstMBI GATC 6 cut(s) 73, 249, 259, 559, 1405, 1418
BstMWI GCNNNNNNNGC 2 cut(s) 311, 377
BstNI CCWGG 6 cut(s) 388, 441, 447, 705, 903, 1506
BstSCI CCNGG 6 cut(s) 386, 439, 445, 703, 901, 1504
BstSFI CTRYAG 1 cut(s) 1381
BstSLI GKGCMC 1 cut(s) 1325
BstV1I GCAGC 6 cut(s) 435, 729, 1130, 1327, 1487, 1546
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 2 cut(s) 73, 1405
BstYI RGATCY 2 cut(s) 73, 1405
BsuI GTATCC 1 cut(s) 725
BsuRI GGCC 3 cut(s) 577, 1323, 1449
BtgI CCRYGG 1 cut(s) 430
BtrI CACGTC 1 cut(s) 275
BtsCI GGATG 3 cut(s) 397, 426, 1043
BtsI GCAGTG 3 cut(s) 252, 624, 1477
Cac8I GCNNGC 1 cut(s) 681
CaiI CAGNNNCTG 3 cut(s) 326, 839, 1481
CciI TCATGA 2 cut(s) 252, 646
Cfr13I GGNCC 6 cut(s) 264, 443, 707, 1321, 1322, 1448
CseI GACGC 2 cut(s) 191, 459
CsiI ACCWGGT 1 cut(s) 703
Csp6I GTAC 4 cut(s) 514, 798, 1158, 1399
CviAII CATG 4 cut(s) 253, 431, 647, 1126
CviQI GTAC 4 cut(s) 514, 798, 1158, 1399
DdeI CTNAG 4 cut(s) 70, 746, 780, 1057
DpnI GATC 6 cut(s) 75, 251, 261, 561, 1407, 1420
DpnII GATC 6 cut(s) 73, 249, 259, 559, 1405, 1418
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 430
Eco24I GRGCYC 4 cut(s) 914, 974, 1325, 1367
Eco47I GGWCC 3 cut(s) 264, 443, 707
Eco57I CTGAAG 1 cut(s) 1176
EcoNI CCTNNNNNAGG 1 cut(s) 726
EcoO109I RGGNCCY 1 cut(s) 1322
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 6 cut(s) 386, 439, 445, 703, 901, 1504
EcoT14I CCWWGG 1 cut(s) 430
EcoT38I GRGCYC 4 cut(s) 914, 974, 1325, 1367
ErhI CCWWGG 1 cut(s) 430
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 4 cut(s) 256, 434, 650, 1129
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 4 cut(s) 200, 544, 693, 1255
FatI CATG 4 cut(s) 252, 430, 646, 1125
FbaI TGATCA 2 cut(s) 249, 559
Fnu4HI GCNGC 6 cut(s) 424, 718, 1119, 1341, 1476, 1560
FokI GGATG 3 cut(s) 404, 413, 1030
FriOI GRGCYC 4 cut(s) 914, 974, 1325, 1367
Fsp4HI GCNGC 6 cut(s) 424, 718, 1119, 1341, 1476, 1560
FspBI CTAG 1 cut(s) 1564
GluI GCNGC 6 cut(s) 424, 718, 1119, 1341, 1476, 1560
GsaI CCCAGC 1 cut(s) 314
GsuI CTGGAG 2 cut(s) 423, 1194
HaeIII GGCC 3 cut(s) 577, 1323, 1449
HapII CCGG 1 cut(s) 1287
HgaI GACGC 2 cut(s) 191, 459
Hin1II CATG 4 cut(s) 256, 434, 650, 1129
HinfI GANTC 3 cut(s) 591, 605, 1063
HpaII CCGG 1 cut(s) 1287
HphI GGTGA 4 cut(s) 562, 693, 1194, 1274
Hpy166II GTNNAC 2 cut(s) 622, 1399
Hpy188I TCNGA 8 cut(s) 73, 151, 264, 610, 747, 1068, 1432, 1483
Hpy188III TCNNGA 4 cut(s) 253, 508, 647, 1134
Hpy8I GTNNAC 2 cut(s) 622, 1399
HpyAV CCTTC 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 8 cut(s) 145, 305, 683, 932, 1118, 1313, 1343, 1475
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 377
HpyF3I CTNAG 4 cut(s) 70, 746, 780, 1057
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 4 cut(s) 256, 434, 650, 1129
Ksp22I TGATCA 2 cut(s) 249, 559
Kzo9I GATC 6 cut(s) 73, 249, 259, 559, 1405, 1418
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 1256, 1370
Lsp1109I GCAGC 6 cut(s) 435, 729, 1130, 1327, 1487, 1546
LweI GCATC 4 cut(s) 107, 435, 491, 1352
MabI ACCWGGT 1 cut(s) 703
MaeI CTAG 1 cut(s) 1564
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 3 cut(s) 490, 500, 1060
MalI GATC 6 cut(s) 75, 251, 261, 561, 1407, 1420
MboI GATC 6 cut(s) 73, 249, 259, 559, 1405, 1418
MboII GAAGA 8 cut(s) 42, 77, 209, 369, 673, 1182, 1311, 1323
MflI RGATCY 2 cut(s) 73, 1405
MhlI GDGCHC 5 cut(s) 280, 914, 974, 1325, 1367
MlyI GAGTC 1 cut(s) 1057
MmeI TCCRAC 2 cut(s) 451, 784
MseI TTAA 7 cut(s) 8, 78, 113, 939, 1092, 1179, 1530
MslI CAYNNNNRTG 1 cut(s) 58
MspI CCGG 1 cut(s) 1287
MspR9I CCNGG 6 cut(s) 388, 441, 447, 705, 903, 1506
MvaI CCWGG 6 cut(s) 388, 441, 447, 705, 903, 1506
MwoI GCNNNNNNNGC 2 cut(s) 311, 377
NcoI CCATGG 1 cut(s) 430
NdeII GATC 6 cut(s) 73, 249, 259, 559, 1405, 1418
NlaIII CATG 4 cut(s) 256, 434, 650, 1129
NlaIV GGNNCC 5 cut(s) 709, 1285, 1323, 1366, 1450
NmeAIII GCCGAG 1 cut(s) 603
NmuCI GTSAC 2 cut(s) 500, 1060
PagI TCATGA 2 cut(s) 252, 646
PasI CCCWGGG 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 591, 605
PflFI GACNNNGTC 1 cut(s) 326
PflMI CCANNNNNTGG 2 cut(s) 839, 920
PfoI TCCNGGA 1 cut(s) 445
PkrI GCNGC 6 cut(s) 425, 719, 1120, 1342, 1477, 1561
PleI GAGTC 1 cut(s) 1057
PpsI GAGTC 1 cut(s) 1057
Psp6I CCWGG 6 cut(s) 386, 439, 445, 703, 901, 1504
PspFI CCCAGC 1 cut(s) 310
PspGI CCWGG 6 cut(s) 386, 439, 445, 703, 901, 1504
PspN4I GGNNCC 5 cut(s) 709, 1285, 1323, 1366, 1450
PspOMI GGGCCC 1 cut(s) 1321
PspPI GGNCC 6 cut(s) 264, 443, 707, 1321, 1322, 1448
PstNI CAGNNNCTG 3 cut(s) 326, 839, 1481
PsuI RGATCY 2 cut(s) 73, 1405
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 4 cut(s) 515, 799, 1159, 1400
RsaNI GTAC 4 cut(s) 514, 798, 1158, 1399
RseI CAYNNNNRTG 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 7 cut(s) 8, 78, 113, 939, 1092, 1179, 1530
SatI GCNGC 6 cut(s) 424, 718, 1119, 1341, 1476, 1560
Sau3AI GATC 6 cut(s) 73, 249, 259, 559, 1405, 1418
Sau96I GGNCC 6 cut(s) 264, 443, 707, 1321, 1322, 1448
ScaI AGTACT 1 cut(s) 515
SchI GAGTC 1 cut(s) 1057
ScrFI CCNGG 6 cut(s) 388, 441, 447, 705, 903, 1506
SduI GDGCHC 5 cut(s) 280, 914, 974, 1325, 1367
SexAI ACCWGGT 1 cut(s) 703
SfaNI GCATC 4 cut(s) 107, 435, 491, 1352
SfcI CTRYAG 1 cut(s) 1381
SinI GGWCC 3 cut(s) 264, 443, 707
SmiMI CAYNNNNRTG 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 1206
SmoI CTYRAG 1 cut(s) 1206
SspI AATATT 1 cut(s) 465
SspMI CTAG 1 cut(s) 1564
StyD4I CCNGG 6 cut(s) 386, 439, 445, 703, 901, 1504
StyI CCWWGG 1 cut(s) 430
TaiI ACGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 847
TatI WGTACW 2 cut(s) 513, 1157
TfiI GAWTC 2 cut(s) 591, 605
Tru1I TTAA 7 cut(s) 8, 78, 113, 939, 1092, 1179, 1530
Tru9I TTAA 7 cut(s) 8, 78, 113, 939, 1092, 1179, 1530
TseFI GTSAC 2 cut(s) 500, 1060
TseI GCWGC 6 cut(s) 423, 717, 1118, 1340, 1475, 1559
Tsp45I GTSAC 2 cut(s) 500, 1060
TspDTI ATGAA 7 cut(s) 157, 210, 269, 583, 635, 663, 905
TspGWI ACGGA 1 cut(s) 1416
Tth111I GACNNNGTC 1 cut(s) 326
Van91I CCANNNNNTGG 2 cut(s) 839, 920
VpaK11BI GGWCC 3 cut(s) 264, 443, 707
XagI CCTNNNNNAGG 1 cut(s) 726
XapI RAATTY 6 cut(s) 127, 934, 1069, 1099, 1108, 1426
XspI CTAG 1 cut(s) 1564
ZrmI AGTACT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.