Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002028

Physical Location & Seq

Genomic Coordinates Reverse (-)

7965378 .. 7968555

Gene Structure 3178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGTTGAGGTCAAGCGAGCAGTTCCGAAGGAGTTATCACCTGGTCCCAGTCGCAGCCCTCTTGGAGGATACAACTATGGTCTGAGTAGGTTCAATAGCTTCCTTAATGGCTACACTCAGGGGTATAATCCAAGTACAGTTGGAGGCTATGGACTTGGTAGATACAGTCCAGTTGCAGGTGGTCGAAGTGGATTTCCTCCATATGGTTCTGGTTATGGAATTGGTATCAATTATGAGCCAGGGTTGAGCCCAGGATTTGGTGGAAATGCAAACTTTAATAGTACTATGAGCTACGGGCGGGGTTTGAGTCCTTATTATATCAATGTTTCAAATAGGTTTAGCAGCCCCATTGGGTATGATGGCAATAATGGAGGAAACACGTCTTCGTTTTTCAGCTCAGTGACTCAGAACTTGTGGGGGAATGGGAATGGGAATGGGAGTGGGAGTGGGAGTGGTCTTAATTATGGAACAAGCTCCACAAATGGCAATGCTTACATCGGATCAGGAAGTGGGACCATTGGAGGAAGTACGTTTGGAAATTCTGGAGCTAATTGGCCTTCTTCAGCAATGTCAGCTCAAGGCGGAGGAAATAATGTTACTAACAATAGCAGGAATCTTGGTTATGGAGTCGGGGATAACAGTTATGGTCTGGGAACTGGAGGGTATGGAAGAAACAGTGGTGCAAGTGTGGCCCCTACAACTTCATTTGCTGCATCAAATGGTGGTGGTTTTGATGGTTCCTTGGCTGACTTTTACAGTAGTAATTCAGTTTATGGAGACCCTACTTGGAGATCATCAAATTCTGATCGAGATGGACCTGGTCCCTTTGGTTATGGGCTTGGCAGTGCAGCCTCTGATGTTTCAGCTAAAAGTTCTCCTGGTTATGTTGGTGGTTATAGTGTTAATAAGAGACAGCCAAATACAGGAATTGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

313

Amino Acids

31.32

Weight (kDa)

9.24

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07810 AT3G07810
fragaria_vesca	FvH4_6g41280 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320
malus_domestica	MD09G1120600.v1.1 MD09G1121100.v1.1 MD17G1111500.v1.1 MD17G1112100.v1.1
prunus_persica	Prupe.3G202600_v2.0.a1 Prupe.3G202600_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1
pyrus_communis	pycom09g04550 pycom17g10350 pycom17g10380
rosa_chinensis	RchiOBHm_Chr2g0156821 RchiOBHm_Chr2g0156871
rosa_laevigata	RLG00000020945 RLG00000020948
rosa_multiflora	Rmu_co8440963.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092640 Rroxscaffold_2G00092680
rosa_rugosa	Rorug02G0456400 Rorug02G0456500 Rorug02G0456800 Rorug02G0456800 Rorug02G0456800 Rorug02G0456900 Rorug02G0456900 Rorug02G0456900
rosa_samantha	Rh2AG522100 Rh2AG522400 Rh2BG535500 Rh2BG535700 Rh2CG507000 Rh2CG507300 Rh2DG544500 Rh2DG544700
rosa_wichuraiana	Rw2G043110 Rw2G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	2 cut(s)	298, 582
AclWI	GGATC	1 cut(s)	508
AcsI	RAATTY	2 cut(s)	538, 799
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	3 cut(s)	136, 283, 529
AfiI	CCNNNNNNNGG	5 cut(s)	65, 176, 203, 257, 923
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	2 cut(s)	94, 330
AjiI	CACGTC	1 cut(s)	381
AjnI	CCWGG	5 cut(s)	40, 238, 250, 817, 877
AluBI	AGCT	7 cut(s)	99, 291, 396, 474, 548, 575, 866
AluI	AGCT	7 cut(s)	99, 291, 396, 474, 548, 575, 866
Alw26I	GTCTC	2 cut(s)	771, 904
AlwI	GGATC	1 cut(s)	508
AlwNI	CAGNNNCTG	1 cut(s)	854
AoxI	GGCC	2 cut(s)	554, 690
ApeKI	GCWGC	5 cut(s)	54, 342, 710, 848, 932
ApoI	RAATTY	2 cut(s)	538, 799
AspS9I	GGNCC	5 cut(s)	44, 513, 691, 815, 821
AsuHPI	GGTGA	1 cut(s)	30
AvaII	GGWCC	4 cut(s)	44, 513, 815, 821
BanII	GRGCYC	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	5 cut(s)	66, 354, 697, 860, 919
BccI	CCATC	3 cut(s)	353, 728, 806
BciT130I	CCWGG	5 cut(s)	42, 240, 252, 819, 879
BciVI	GTATCC	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	771, 904
BfaI	CTAG	1 cut(s)	937
BfuAI	ACCTGC	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	62
BisI	GCNGC	5 cut(s)	55, 343, 711, 849, 933
BlsI	GCNGC	5 cut(s)	56, 344, 712, 850, 934
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	5 cut(s)	42, 240, 252, 819, 879
Bme18I	GGWCC	4 cut(s)	44, 513, 815, 821
BmgBI	CACGTC	1 cut(s)	381
BmgT120I	GGNCC	5 cut(s)	44, 513, 691, 815, 821
BmiI	GGNNCC	5 cut(s)	46, 514, 693, 739, 823
BmrFI	CCNGG	5 cut(s)	42, 240, 252, 819, 879
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	722
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	2 cut(s)	564, 678
BpuEI	CTTGAG	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	771
BsaJI	CCNNGG	3 cut(s)	239, 250, 741
BsaXI	ACNNNNNCTCC	4 cut(s)	430, 436, 460, 466
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 176, 203, 257, 923
Bse1I	ACTGG	3 cut(s)	48, 170, 661
Bse3DI	GCAATG	2 cut(s)	493, 573
BseBI	CCWGG	5 cut(s)	42, 240, 252, 819, 879
BseDI	CCNNGG	3 cut(s)	239, 250, 741
BseLI	CCNNNNNNNGG	5 cut(s)	65, 176, 203, 257, 923
BseMI	GCAATG	2 cut(s)	493, 573
BseMII	CTCAG	4 cut(s)	74, 131, 411, 419
BseNI	ACTGG	3 cut(s)	48, 170, 661
BseXI	GCAGC	5 cut(s)	66, 354, 697, 860, 919
BsgI	GTGCAG	1 cut(s)	867
BshFI	GGCC	2 cut(s)	556, 692
BslFI	GGGAC	3 cut(s)	30, 526, 807
BslI	CCNNNNNNNGG	5 cut(s)	65, 176, 203, 257, 923
BsmAI	GTCTC	2 cut(s)	771, 904
BsmFI	GGGAC	3 cut(s)	30, 526, 807
BsnI	GGCC	2 cut(s)	556, 692
Bso31I	GGTCTC	1 cut(s)	771
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	500, 791, 805
BspACI	CCGC	2 cut(s)	298, 582
BspANI	GGCC	2 cut(s)	556, 692
BspCNI	CTCAG	4 cut(s)	75, 130, 410, 418
BspLI	GGNNCC	5 cut(s)	46, 514, 693, 739, 823
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	508
BspTNI	GGTCTC	1 cut(s)	771
BsrDI	GCAATG	2 cut(s)	493, 573
BsrI	ACTGG	3 cut(s)	48, 170, 661
BssECI	CCNNGG	3 cut(s)	239, 250, 741
BssMI	GATC	3 cut(s)	500, 791, 805
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	5 cut(s)	42, 240, 252, 819, 879
Bst4CI	ACNGT	5 cut(s)	139, 167, 641, 677, 758
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	4 cut(s)	83, 117, 397, 405
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstKTI	GATC	3 cut(s)	503, 794, 808
BstMAI	GTCTC	2 cut(s)	771, 904
BstMBI	GATC	3 cut(s)	500, 791, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	572, 689
BstNI	CCWGG	5 cut(s)	42, 240, 252, 819, 879
BstSCI	CCNGG	5 cut(s)	40, 238, 250, 817, 877
BstV1I	GCAGC	5 cut(s)	66, 354, 697, 860, 919
BstV2I	GAAGAC	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	556, 692
BtrI	CACGTC	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	850
BtsIMutI	CAGTG	3 cut(s)	405, 682, 850
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	854
Cfr13I	GGNCC	5 cut(s)	44, 513, 691, 815, 821
CsiI	ACCWGGT	2 cut(s)	40, 817
Csp6I	GTAC	3 cut(s)	135, 282, 528
CviQI	GTAC	3 cut(s)	135, 282, 528
DdeI	CTNAG	4 cut(s)	83, 117, 397, 405
DpnI	GATC	3 cut(s)	502, 793, 807
DpnII	GATC	3 cut(s)	500, 791, 805
EciI	GGCGGA	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	771
Eco47I	GGWCC	4 cut(s)	44, 513, 815, 821
Eco57I	CTGAAG	1 cut(s)	546
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoRII	CCWGG	5 cut(s)	40, 238, 250, 817, 877
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	741
FaqI	GGGAC	3 cut(s)	30, 526, 807
FauI	CCCGC	1 cut(s)	291
FauNDI	CATATG	1 cut(s)	202
Fnu4HI	GCNGC	5 cut(s)	55, 343, 711, 849, 933
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	5 cut(s)	55, 343, 711, 849, 933
FspBI	CTAG	1 cut(s)	937
GluI	GCNGC	5 cut(s)	55, 343, 711, 849, 933
GsuI	CTGGAG	2 cut(s)	564, 678
HaeIII	GGCC	2 cut(s)	556, 692
HinfI	GANTC	4 cut(s)	307, 403, 613, 627
HphI	GGTGA	1 cut(s)	30
Hpy188I	TCNGA	6 cut(s)	27, 84, 408, 500, 805, 856
Hpy188III	TCNNGA	3 cut(s)	504, 543, 809
HpyAV	CCTTC	2 cut(s)	22, 567
HpyCH4III	ACNGT	5 cut(s)	139, 167, 641, 677, 758
HpyCH4IV	ACGT	2 cut(s)	380, 530
HpyCH4V	TGCA	5 cut(s)	176, 269, 683, 713, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	572, 689
HpyF3I	CTNAG	4 cut(s)	83, 117, 397, 405
HpySE526I	ACGT	2 cut(s)	380, 530
Kzo9I	GATC	3 cut(s)	500, 791, 805
LmnI	GCTCC	2 cut(s)	479, 545
Lsp1109I	GCAGC	5 cut(s)	66, 354, 697, 860, 919
LweI	GCATC	1 cut(s)	722
MabI	ACCWGGT	2 cut(s)	40, 817
MaeI	CTAG	1 cut(s)	937
MaeII	ACGT	2 cut(s)	380, 530
MaeIII	GTNAC	2 cut(s)	400, 595
MalI	GATC	3 cut(s)	502, 793, 807
MboI	GATC	3 cut(s)	500, 791, 805
MboII	GAAGA	3 cut(s)	375, 552, 681
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	8 cut(s)	219, 229, 460, 538, 550, 763, 799, 927
MlyI	GAGTC	3 cut(s)	316, 397, 636
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	9 cut(s)	59, 69, 137, 207, 365, 515, 578, 653, 862
MseI	TTAA	4 cut(s)	105, 276, 459, 903
MspR9I	CCNGG	5 cut(s)	42, 240, 252, 819, 879
MvaI	CCWGG	5 cut(s)	42, 240, 252, 819, 879
MwoI	GCNNNNNNNGC	2 cut(s)	572, 689
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	3 cut(s)	500, 791, 805
NlaIV	GGNNCC	5 cut(s)	46, 514, 693, 739, 823
NmuCI	GTSAC	1 cut(s)	400
PaqCI	CACCTGC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	613
PflFI	GACNNNGTC	1 cut(s)	819
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	5 cut(s)	56, 344, 712, 850, 934
PleI	GAGTC	3 cut(s)	315, 397, 635
PpsI	GAGTC	3 cut(s)	315, 397, 635
Psp6I	CCWGG	5 cut(s)	40, 238, 250, 817, 877
PspGI	CCWGG	5 cut(s)	40, 238, 250, 817, 877
PspN4I	GGNNCC	5 cut(s)	46, 514, 693, 739, 823
PspPI	GGNCC	5 cut(s)	44, 513, 691, 815, 821
PstNI	CAGNNNCTG	1 cut(s)	854
PsyI	GACNNNGTC	1 cut(s)	819
RsaI	GTAC	3 cut(s)	136, 283, 529
RsaNI	GTAC	3 cut(s)	135, 282, 528
SaqAI	TTAA	4 cut(s)	105, 276, 459, 903
SatI	GCNGC	5 cut(s)	55, 343, 711, 849, 933
Sau3AI	GATC	3 cut(s)	500, 791, 805
Sau96I	GGNCC	5 cut(s)	44, 513, 691, 815, 821
ScaI	AGTACT	1 cut(s)	283
SchI	GAGTC	3 cut(s)	316, 397, 636
ScrFI	CCNGG	5 cut(s)	42, 240, 252, 819, 879
SduI	GDGCHC	1 cut(s)	251
SexAI	ACCWGGT	2 cut(s)	40, 817
SfaNI	GCATC	1 cut(s)	722
SinI	GGWCC	4 cut(s)	44, 513, 815, 821
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	8 cut(s)	219, 229, 460, 538, 550, 763, 799, 927
SsiI	CCGC	2 cut(s)	298, 582
SspMI	CTAG	1 cut(s)	937
StyD4I	CCNGG	5 cut(s)	40, 238, 250, 817, 877
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	5 cut(s)	139, 167, 641, 677, 758
TaiI	ACGT	2 cut(s)	383, 533
TaqI	TCGA	2 cut(s)	184, 808
TasI	AATT	8 cut(s)	219, 229, 460, 538, 550, 763, 799, 927
TatI	WGTACW	2 cut(s)	134, 281
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	4 cut(s)	105, 276, 459, 903
Tru9I	TTAA	4 cut(s)	105, 276, 459, 903
TscAI	CASTG	3 cut(s)	405, 682, 850
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	5 cut(s)	54, 342, 710, 848, 932
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	693
TspRI	CASTG	3 cut(s)	405, 682, 850
Tth111I	GACNNNGTC	1 cut(s)	819
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	4 cut(s)	44, 513, 815, 821
XagI	CCTNNNNNAGG	1 cut(s)	63
XapI	RAATTY	2 cut(s)	538, 799
XspI	CTAG	1 cut(s)	937
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.