Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002028

Physical Location & Seq

Genomic Coordinates Forward (+)

73390290 .. 73396221

Gene Structure 5932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52563

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGCAATCCGATAGTGGCAAGTTATTCATTGGTGGCATATCTTGGGACACAAATGAAGAGCGTCTCAAAGAGTATTTCAGTGCTTTTGGGGAGGTGGTAGAAGCAGTGATCATGAAGGATCGGACCACAGGACGTGCTCGTGGATTTGGTTTTGTAGTTTTTGCAGACCCAGCAGTAGCAGACACTGTCATAATGGAAAAGCACAACATTGATGGAAGAATGGTGGAGGCAAAAAAGGCTGTTCCCAGGGATGACCAGAACACTTTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCAGGTCCAGGACGCACAAGAAAAATATTTGTTGGAGGTTTAGCATCTACTGTTACAGAGGGTGACTTCAAGAAGTACTTTGAACAGTTTGGGACAATTACAGATGTTGTGGTGATGTATGATCACAACACCCAGAGGCCGAGAGGCTTCGGATTCATCACTTATGATTCAGAGGAAGCAGTGGACAAGGTTTTGCTAAAGACATTTCATGAACTGAATGGGAAGATGGTTGAGGTCAAGCGTGCAGTTCCAAAAGAGTTATCACCCGGTCCCAGTCGCAGCCCTCTTGGTGGATACAATTATGGTCTGAGTAGGGTCAATAACTTCCTTACTGGCTATACTCAGGGGTATAATCCAAGTACGGTTGGAGGTTATGGACTTGGTAGGTTCAGTCCAGTTGCTGGTGGTCGAAGTGGATTTCCTCCATTTGGTTCTGGTTATGGAATGGGAATGAACTTTGAGCCAGGGTTGAGCCCAAGTTTTGGAGGAAATGCAAATTTTAATAATAATGTGAGCTATGGACGGGGATTGAGCCCTTATTATATCAATAATTCAAATAGGTTTAGCAATCCCATTGGATATGATGGTAATAATGGAGGAAGCTCATCCTTTTTTAGCTCAGTGACTCGGAATTTGTGGGGTAATGGGGGTCTTAATACAAATTCTGCAAATTCCAGTGCTTACATGGGTTCAGGAAGTGGTAGCATTGGAGGAAGTACATTTGGCAATGCTGGAGTTAATTGGCGTTCTTCAGCAATTTCACCTCAAGGTGGAGGAAATAATGTCTCTAACAATAGTGGGACACTTGGCTATGGAGCTGGTGATAACAGTTATGGCTTGGGAACCGGAGGGTATGGAAGAAACAGTGGTGCAACTGTGGGCCCTACATCTTCTTTTGCTGCATCAAATGGTGGTTTTGAGGGCTCCTTTACTGACTTCTACAGTAGTGGTTCAGTGTACGGAGATCCTACTTGGAGATCATCAAATTCTGAGCGAGATGGGTCTGGCCCCTTTGGGTATGGGCTTGGCAGTGCAGCTTCTGATGTTTCAGCTAAAAGTTCTCCTGGTTATGTTGGTGGTTATAGTGTTAATAAGAGACAGCCGAATACAGGAATTGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

473

Amino Acids

49.52

Weight (kDa)

8.92

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	8 - 68	9.7e-16	RNA recognition motif
RRM_7	PF16367	106 - 176	3.1e-06	RNA recognition motif
RRM_1	PF00076	108 - 165	1.3e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07810 AT3G07810
fragaria_vesca	FvH4_6g41280 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320
malus_domestica	MD09G1120600.v1.1 MD09G1121100.v1.1 MD17G1111500.v1.1 MD17G1112100.v1.1
prunus_persica	Prupe.3G202600_v2.0.a1 Prupe.3G202600_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1
pyrus_communis	pycom09g04550 pycom17g10350 pycom17g10380
rosa_chinensis	RchiOBHm_Chr2g0156821 RchiOBHm_Chr2g0156871
rosa_laevigata	RLG00000020945 RLG00000020948
rosa_multiflora	Rmu_co8440963.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092640 Rroxscaffold_2G00092680
rosa_rugosa	Rorug02G0456400 Rorug02G0456500 Rorug02G0456800 Rorug02G0456800 Rorug02G0456800 Rorug02G0456900 Rorug02G0456900 Rorug02G0456900
rosa_samantha	Rh2AG522100 Rh2AG522400 Rh2BG535500 Rh2BG535700 Rh2CG507000 Rh2CG507300 Rh2DG544500 Rh2DG544700
rosa_wichuraiana	Rw2G043110 Rw2G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	698, 779
AclWI	GGATC	2 cut(s)	126, 1256
AcsI	RAATTY	5 cut(s)	793, 928, 958, 967, 1282
AcuI	CTGAAG	1 cut(s)	1032
AfaI	GTAC	4 cut(s)	374, 658, 1015, 1256
AfiI	CCNNNNNNNGG	7 cut(s)	305, 587, 698, 725, 779, 1067, 1406
AgsI	TTSAA	3 cut(s)	367, 380, 852
AjiI	CACGTC	1 cut(s)	134
AjnI	CCWGG	5 cut(s)	245, 298, 304, 760, 1360
AluBI	AGCT	6 cut(s)	813, 900, 915, 1115, 1334, 1349
AluI	AGCT	6 cut(s)	813, 900, 915, 1115, 1334, 1349
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	3 cut(s)	68, 1087, 1387
AlwI	GGATC	2 cut(s)	126, 1256
AlwNI	CAGNNNCTG	3 cut(s)	185, 698, 1337
AoxI	GGCC	3 cut(s)	434, 1177, 1303
ApaI	GGGCCC	1 cut(s)	1181
ApeKI	GCWGC	5 cut(s)	282, 576, 1196, 1331, 1415
ApoI	RAATTY	5 cut(s)	793, 928, 958, 967, 1282
ArsI	GACNNNNNNTTYG	2 cut(s)	913, 945
AspS9I	GGNCC	6 cut(s)	123, 302, 566, 1177, 1178, 1304
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	5 cut(s)	371, 421, 552, 1050, 1130
AvaII	GGWCC	3 cut(s)	123, 302, 566
BaeGI	GKGCMC	1 cut(s)	1181
BanII	GRGCYC	4 cut(s)	773, 833, 1181, 1223
BauI	CACGAG	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	5 cut(s)	294, 588, 1183, 1343, 1402
BccI	CCATC	4 cut(s)	206, 517, 875, 1289
BciT130I	CCWGG	5 cut(s)	247, 300, 306, 762, 1362
BciVI	GTATCC	1 cut(s)	584
BclI	TGATCA	2 cut(s)	108, 418
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	3 cut(s)	68, 1087, 1387
BfaI	CTAG	1 cut(s)	1420
BfmI	CTRYAG	1 cut(s)	1237
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	5 cut(s)	283, 577, 1197, 1332, 1416
BlsI	GCNGC	5 cut(s)	284, 578, 1198, 1333, 1417
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	6 cut(s)	247, 300, 306, 564, 762, 1362
Bme18I	GGWCC	3 cut(s)	123, 302, 566
BmgBI	CACGTC	1 cut(s)	134
BmgT120I	GGNCC	6 cut(s)	123, 302, 566, 1177, 1178, 1304
BmiI	GGNNCC	5 cut(s)	568, 1141, 1179, 1222, 1306
BmrFI	CCNGG	6 cut(s)	247, 300, 306, 564, 762, 1362
BmrI	ACTGGG	1 cut(s)	564
BmsI	GCATC	3 cut(s)	294, 350, 1208
BmuI	ACTGGG	1 cut(s)	564
BpmI	CTGGAG	2 cut(s)	282, 1050
BpuEI	CTTGAG	1 cut(s)	1047
BpuMI	CCSGG	1 cut(s)	564
BsaJI	CCNNGG	4 cut(s)	245, 246, 289, 761
BsaWI	WCCGGW	1 cut(s)	1142
Bsc4I	CCNNNNNNNGG	7 cut(s)	305, 587, 698, 725, 779, 1067, 1406
Bse1I	ACTGG	4 cut(s)	570, 634, 692, 972
Bse3DI	GCAATG	1 cut(s)	1030
BseBI	CCWGG	5 cut(s)	247, 300, 306, 762, 1362
BseDI	CCNNGG	4 cut(s)	245, 246, 289, 761
BseGI	GGATG	3 cut(s)	256, 285, 902
BseLI	CCNNNNNNNGG	7 cut(s)	305, 587, 698, 725, 779, 1067, 1406
BseMI	GCAATG	1 cut(s)	1030
BseMII	CTCAG	4 cut(s)	596, 653, 930, 1278
BseNI	ACTGG	4 cut(s)	570, 634, 692, 972
BseSI	GKGCMC	1 cut(s)	1181
BseXI	GCAGC	5 cut(s)	294, 588, 1183, 1343, 1402
BseYI	CCCAGC	1 cut(s)	169
BsgI	GTGCAG	2 cut(s)	561, 1350
BshFI	GGCC	3 cut(s)	436, 1179, 1305
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	564, 1143
BslFI	GGGAC	4 cut(s)	59, 403, 552, 1111
BslI	CCNNNNNNNGG	7 cut(s)	305, 587, 698, 725, 779, 1067, 1406
BsmAI	GTCTC	3 cut(s)	68, 1087, 1387
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	4 cut(s)	59, 403, 552, 1111
BsnI	GGCC	3 cut(s)	436, 1179, 1305
Bsp120I	GGGCCC	1 cut(s)	1177
Bsp1286I	GDGCHC	5 cut(s)	139, 773, 833, 1181, 1223
Bsp143I	GATC	5 cut(s)	108, 118, 418, 1261, 1274
Bsp19I	CCATGG	1 cut(s)	289
BspANI	GGCC	3 cut(s)	436, 1179, 1305
BspCNI	CTCAG	4 cut(s)	597, 652, 929, 1279
BspHI	TCATGA	2 cut(s)	111, 505
BspLI	GGNNCC	5 cut(s)	568, 1141, 1179, 1222, 1306
BspPI	GGATC	2 cut(s)	126, 1256
BspQI	GCTCTTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	1030
BsrI	ACTGG	4 cut(s)	570, 634, 692, 972
BssECI	CCNNGG	4 cut(s)	245, 246, 289, 761
BssMI	GATC	5 cut(s)	108, 118, 418, 1261, 1274
BssSI	CACGAG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	5 cut(s)	247, 300, 306, 762, 1362
Bst4CI	ACNGT	9 cut(s)	187, 278, 349, 384, 661, 1127, 1163, 1174, 1241
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	4 cut(s)	605, 639, 916, 1287
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	3 cut(s)	256, 285, 902
BstKTI	GATC	5 cut(s)	111, 121, 421, 1264, 1277
BstMAI	GTCTC	3 cut(s)	68, 1087, 1387
BstMBI	GATC	5 cut(s)	108, 118, 418, 1261, 1274
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 236
BstNI	CCWGG	5 cut(s)	247, 300, 306, 762, 1362
BstSCI	CCNGG	6 cut(s)	245, 298, 304, 562, 760, 1360
BstSFI	CTRYAG	1 cut(s)	1237
BstSLI	GKGCMC	1 cut(s)	1181
BstV1I	GCAGC	5 cut(s)	294, 588, 1183, 1343, 1402
BstX2I	RGATCY	1 cut(s)	1261
BstYI	RGATCY	1 cut(s)	1261
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	3 cut(s)	436, 1179, 1305
BtgI	CCRYGG	1 cut(s)	289
BtrI	CACGTC	1 cut(s)	134
BtsCI	GGATG	3 cut(s)	256, 285, 902
BtsI	GCAGTG	3 cut(s)	111, 483, 1333
Cac8I	GCNNGC	1 cut(s)	540
CaiI	CAGNNNCTG	3 cut(s)	185, 698, 1337
CciI	TCATGA	2 cut(s)	111, 505
Cfr13I	GGNCC	6 cut(s)	123, 302, 566, 1177, 1178, 1304
CseI	GACGC	2 cut(s)	50, 318
Csp6I	GTAC	4 cut(s)	373, 657, 1014, 1255
CviAII	CATG	4 cut(s)	112, 290, 506, 982
CviQI	GTAC	4 cut(s)	373, 657, 1014, 1255
DdeI	CTNAG	4 cut(s)	605, 639, 916, 1287
DpnI	GATC	5 cut(s)	110, 120, 420, 1263, 1276
DpnII	GATC	5 cut(s)	108, 118, 418, 1261, 1274
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	289
Eco24I	GRGCYC	4 cut(s)	773, 833, 1181, 1223
Eco47I	GGWCC	3 cut(s)	123, 302, 566
Eco57I	CTGAAG	1 cut(s)	1032
EcoO109I	RGGNCCY	1 cut(s)	1178
EcoRII	CCWGG	5 cut(s)	245, 298, 304, 760, 1360
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	4 cut(s)	773, 833, 1181, 1223
ErhI	CCWWGG	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	4 cut(s)	115, 293, 509, 985
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	4 cut(s)	59, 403, 552, 1111
FatI	CATG	4 cut(s)	111, 289, 505, 981
FbaI	TGATCA	2 cut(s)	108, 418
Fnu4HI	GCNGC	5 cut(s)	283, 577, 1197, 1332, 1416
FokI	GGATG	3 cut(s)	263, 272, 889
FriOI	GRGCYC	4 cut(s)	773, 833, 1181, 1223
Fsp4HI	GCNGC	5 cut(s)	283, 577, 1197, 1332, 1416
FspBI	CTAG	1 cut(s)	1420
GluI	GCNGC	5 cut(s)	283, 577, 1197, 1332, 1416
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	2 cut(s)	282, 1050
HaeIII	GGCC	3 cut(s)	436, 1179, 1305
HapII	CCGG	2 cut(s)	564, 1143
HgaI	GACGC	2 cut(s)	50, 318
Hin1II	CATG	4 cut(s)	115, 293, 509, 985
HinfI	GANTC	3 cut(s)	450, 464, 922
HpaII	CCGG	2 cut(s)	564, 1143
HphI	GGTGA	5 cut(s)	371, 421, 552, 1050, 1130
Hpy166II	GTNNAC	2 cut(s)	481, 1255
Hpy188I	TCNGA	8 cut(s)	10, 123, 449, 469, 606, 927, 1288, 1339
Hpy188III	TCNNGA	4 cut(s)	112, 367, 506, 990
Hpy8I	GTNNAC	2 cut(s)	481, 1255
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	9 cut(s)	187, 278, 349, 384, 661, 1127, 1163, 1174, 1241
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	8 cut(s)	4, 164, 542, 791, 965, 1169, 1199, 1331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 236
HpyF3I	CTNAG	4 cut(s)	605, 639, 916, 1287
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	4 cut(s)	115, 293, 509, 985
Ksp22I	TGATCA	2 cut(s)	108, 418
Kzo9I	GATC	5 cut(s)	108, 118, 418, 1261, 1274
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	1112, 1226
Lsp1109I	GCAGC	5 cut(s)	294, 588, 1183, 1343, 1402
LweI	GCATC	3 cut(s)	294, 350, 1208
MaeI	CTAG	1 cut(s)	1420
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	3 cut(s)	349, 359, 919
MalI	GATC	5 cut(s)	110, 120, 420, 1263, 1276
MboI	GATC	5 cut(s)	108, 118, 418, 1261, 1274
MboII	GAAGA	6 cut(s)	68, 228, 532, 1038, 1167, 1179
MflI	RGATCY	1 cut(s)	1261
MhlI	GDGCHC	5 cut(s)	139, 773, 833, 1181, 1223
MlyI	GAGTC	1 cut(s)	916
MmeI	TCCRAC	2 cut(s)	310, 643
MseI	TTAA	4 cut(s)	798, 951, 1035, 1386
MspI	CCGG	2 cut(s)	564, 1143
MspR9I	CCNGG	6 cut(s)	247, 300, 306, 564, 762, 1362
MvaI	CCWGG	5 cut(s)	247, 300, 306, 762, 1362
MwoI	GCNNNNNNNGC	2 cut(s)	170, 236
NciI	CCSGG	1 cut(s)	564
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	5 cut(s)	108, 118, 418, 1261, 1274
NlaIII	CATG	4 cut(s)	115, 293, 509, 985
NlaIV	GGNNCC	5 cut(s)	568, 1141, 1179, 1222, 1306
NmeAIII	GCCGAG	1 cut(s)	462
NmuCI	GTSAC	2 cut(s)	359, 919
PagI	TCATGA	2 cut(s)	111, 505
PasI	CCCWGGG	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	450, 464
PflFI	GACNNNGTC	1 cut(s)	185
PflMI	CCANNNNNTGG	2 cut(s)	698, 779
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	5 cut(s)	284, 578, 1198, 1333, 1417
PleI	GAGTC	1 cut(s)	916
PpsI	GAGTC	1 cut(s)	916
Psp6I	CCWGG	5 cut(s)	245, 298, 304, 760, 1360
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	5 cut(s)	245, 298, 304, 760, 1360
PspN4I	GGNNCC	5 cut(s)	568, 1141, 1179, 1222, 1306
PspOMI	GGGCCC	1 cut(s)	1177
PspPI	GGNCC	6 cut(s)	123, 302, 566, 1177, 1178, 1304
PstNI	CAGNNNCTG	3 cut(s)	185, 698, 1337
PsuI	RGATCY	1 cut(s)	1261
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	4 cut(s)	374, 658, 1015, 1256
RsaNI	GTAC	4 cut(s)	373, 657, 1014, 1255
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	4 cut(s)	798, 951, 1035, 1386
SatI	GCNGC	5 cut(s)	283, 577, 1197, 1332, 1416
Sau3AI	GATC	5 cut(s)	108, 118, 418, 1261, 1274
Sau96I	GGNCC	6 cut(s)	123, 302, 566, 1177, 1178, 1304
ScaI	AGTACT	1 cut(s)	374
SchI	GAGTC	1 cut(s)	916
ScrFI	CCNGG	6 cut(s)	247, 300, 306, 564, 762, 1362
SduI	GDGCHC	5 cut(s)	139, 773, 833, 1181, 1223
SfaNI	GCATC	3 cut(s)	294, 350, 1208
SfcI	CTRYAG	1 cut(s)	1237
SinI	GGWCC	3 cut(s)	123, 302, 566
SmlI	CTYRAG	1 cut(s)	1062
SmoI	CTYRAG	1 cut(s)	1062
SspI	AATATT	1 cut(s)	324
SspMI	CTAG	1 cut(s)	1420
StyD4I	CCNGG	6 cut(s)	245, 298, 304, 562, 760, 1360
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	9 cut(s)	187, 278, 349, 384, 661, 1127, 1163, 1174, 1241
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	706
TatI	WGTACW	2 cut(s)	372, 1013
TfiI	GAWTC	2 cut(s)	450, 464
Tru1I	TTAA	4 cut(s)	798, 951, 1035, 1386
Tru9I	TTAA	4 cut(s)	798, 951, 1035, 1386
TseFI	GTSAC	2 cut(s)	359, 919
TseI	GCWGC	5 cut(s)	282, 576, 1196, 1331, 1415
Tsp45I	GTSAC	2 cut(s)	359, 919
TspDTI	ATGAA	7 cut(s)	16, 69, 128, 442, 494, 522, 764
TspGWI	ACGGA	1 cut(s)	1272
Tth111I	GACNNNGTC	1 cut(s)	185
Van91I	CCANNNNNTGG	2 cut(s)	698, 779
VpaK11BI	GGWCC	3 cut(s)	123, 302, 566
XapI	RAATTY	5 cut(s)	793, 928, 958, 967, 1282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	979
XspI	CTAG	1 cut(s)	1420
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.