Prupe.3G202600_v2.0.a1

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
21053625 .. 21059257
5633 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G202600.2

Sequence Viewer

Length: 1431 bp
ATGCAATCCGATAGTGGTAAGTTATTTATTGGCGGCATATCTTGGGACACAAATGAAGAGCGCCTGAAAGAGTATTTCAGTACTTTTGGAGAGGTGGTAGAAGCAGTGATCATGAAGGATCGGACCACAGGCCGTGCTCGTGGTTTCGGTTTTGTAGTTTTTGCTGACCCAGCAGTGGCAGACAGCGTCATAATGGAGAAGCACAACATCGATGGAAGGATGGTTGAGGCCAAAAAGGCTGTTCCCAGGGATGACCAGAACATTTTGGGTAGAAGCAGTGGCAGCATCCATGGTTCTCCAGGTCCAGGCCGCACAAGAAAGATTTTTGTTGGAGGTTTAGCATCCACTGTCACAGAGAGTGACTTCAAGAAGTACTTTGAACAGTTTGGGACAATCACTGATGTTGTGGTGATGTATGATCACAACACCCAGAGGCCGAGAGGCTTTGGGTTCATCACTTATGATTCAGAGGAGGCAGTGGACAAGGTTTTGCTTAAGACATTTCATGAACTGAACGGGAAGATGGTTGAAGTCAAGCGTGCAGTTCCTAAAGAGTTATCACCTGGTCCCAGTCGCAGCCCTATTGGAGGATACAACTATGGTCTGAGTAGGGTCAATAGCTTCCTTAATGGCTACACTCAGGGATATACTCCAAATACAGTTGGAGGCTATGGGCTTGGTAGGTTCAGTCCAGTTGCTGGTGGTCGAAGTGGATTTCCTCCATTTAATTCTGGTTATGGAATGGGTATGAATTATGAGCCAGGGTTGAGCCCAGGTTTTGGAGGAAATACAAACTTTAATAGTAATATCAGCTACCCACGGGGAGTGAGTCCTTATTATATCAATAATTCAAATAGATTTAGCAGTCCCGTTGGGTATGATGGTGGTAATGGAGGAAACACATCATCTTTTTTTAGCTCGGTGACTCGGAACTTGTGGGGCAATGGGGGGCTTAATTATGGAACAAATTCCCAAAGTTCCAGTGCTTACATGGGATCAGGAAGTGGGACCATTGGAGGAAGTACGTTTGGCAATACTGGAGTTAATTGGCGTTCTTCGGCAATTTCAGCTCAAGGTGGAGGAAATAATGTTTCTAACAATAGTGGGAATCTTGGTTATGGAGTTGGTGATAACAGTTATGGTTTGGGAACCGGAGGTTATGGAAGAAACAGTGGTACAAGTGTGGCCCCTACATCTTCATTTGCTGTGTCAAATGGTGGTTTCGATGGGTCCTTCTCTGACTTTTACAATGGTAATTCTGTTTATGGAGATCCTACTTGGCGATCATCGAATTCCGAGCGAGAAGGGTCTGTTCCCTTTGGTTATGGTCTTGGCGGTGCAACTTCTGATGTTTCAGCAAAAAGTTCGCCTGGTTATGTTGGTGGTTATAGTGTTAATAAGAGACAGTCAAACACAGGAATTGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

477

Amino Acids

50.08

Weight (kDa)

8.9

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 698, 779
AciI CCGC 3 cut(s) 33, 310, 1335
AclWI GGATC 3 cut(s) 126, 1003, 1265
AcsI RAATTY 2 cut(s) 967, 1291
AfaI GTAC 4 cut(s) 82, 374, 1024, 1177
AfiI CCNNNNNNNGG 5 cut(s) 175, 305, 587, 698, 779
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 4 cut(s) 367, 380, 530, 852
AjnI CCWGG 7 cut(s) 245, 298, 304, 562, 760, 772, 1369
AluBI AGCT 4 cut(s) 621, 813, 918, 1070
AluI AGCT 4 cut(s) 621, 813, 918, 1070
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 1396
AlwI GGATC 3 cut(s) 126, 1003, 1265
AlwNI CAGNNNCTG 1 cut(s) 698
AoxI GGCC 5 cut(s) 130, 228, 307, 434, 1185
ApeKI GCWGC 3 cut(s) 282, 576, 1424
ApoI RAATTY 2 cut(s) 967, 1291
Asp700I GAANNNNTTC 1 cut(s) 967
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 6 cut(s) 123, 302, 566, 1008, 1186, 1230
AsuHPI GGTGA 4 cut(s) 421, 552, 934, 1139
AvaII GGWCC 5 cut(s) 123, 302, 566, 1008, 1230
BaeI ACNNNNGTAYC 2 cut(s) 1167, 1200
BanII GRGCYC 1 cut(s) 773
BauI CACGAG 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 294, 588, 1411
BccI CCATC 5 cut(s) 206, 214, 517, 875, 1220
BceAI ACGGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 1347, 1381
BciT130I CCWGG 7 cut(s) 247, 300, 306, 564, 762, 774, 1371
BciVI GTATCC 1 cut(s) 584
BclI TGATCA 2 cut(s) 108, 418
BcoDI GTCTC 1 cut(s) 1396
BfaI CTAG 1 cut(s) 1429
BfoI RGCGCY 1 cut(s) 64
BfrI CTTAAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 584
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 5 cut(s) 34, 283, 310, 577, 1425
BlsI GCNGC 5 cut(s) 35, 284, 311, 578, 1426
BmcAI AGTACT 2 cut(s) 82, 374
Bme1390I CCNGG 7 cut(s) 247, 300, 306, 564, 762, 774, 1371
Bme18I GGWCC 5 cut(s) 123, 302, 566, 1008, 1230
BmgT120I GGNCC 6 cut(s) 123, 302, 566, 1008, 1186, 1230
BmiI GGNNCC 5 cut(s) 568, 1009, 1150, 1188, 1231
BmrFI CCNGG 7 cut(s) 247, 300, 306, 564, 762, 774, 1371
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 2 cut(s) 294, 350
BmuI ACTGGG 1 cut(s) 564
BpmI CTGGAG 2 cut(s) 282, 1059
BpuEI CTTGAG 1 cut(s) 1056
Bsa29I ATCGAT 1 cut(s) 210
BsaJI CCNNGG 6 cut(s) 245, 246, 289, 761, 772, 818
BsaWI WCCGGW 1 cut(s) 1151
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 5 cut(s) 175, 305, 587, 698, 779
Bse1I ACTGG 4 cut(s) 570, 692, 981, 1042
Bse3DI GCAATG 1 cut(s) 949
BseBI CCWGG 7 cut(s) 247, 300, 306, 564, 762, 774, 1371
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 6 cut(s) 245, 246, 289, 761, 772, 818
BseGI GGATG 4 cut(s) 225, 256, 285, 341
BseLI CCNNNNNNNGG 5 cut(s) 175, 305, 587, 698, 779
BseMI GCAATG 1 cut(s) 949
BseMII CTCAG 2 cut(s) 596, 653
BseNI ACTGG 4 cut(s) 570, 692, 981, 1042
BseRI GAGGAG 1 cut(s) 485
BseXI GCAGC 3 cut(s) 294, 588, 1411
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 561
BshFI GGCC 5 cut(s) 132, 230, 309, 436, 1187
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 1152
BslFI GGGAC 5 cut(s) 59, 403, 552, 852, 1021
BslI CCNNNNNNNGG 5 cut(s) 175, 305, 587, 698, 779
BsmAI GTCTC 1 cut(s) 1396
BsmFI GGGAC 5 cut(s) 59, 403, 552, 852, 1021
BsnI GGCC 5 cut(s) 132, 230, 309, 436, 1187
Bsp1286I GDGCHC 2 cut(s) 139, 773
Bsp143I GATC 6 cut(s) 108, 118, 418, 995, 1270, 1283
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 3 cut(s) 33, 310, 1335
BspANI GGCC 5 cut(s) 132, 230, 309, 436, 1187
BspCNI CTCAG 2 cut(s) 597, 652
BspDI ATCGAT 1 cut(s) 210
BspHI TCATGA 2 cut(s) 111, 505
BspLI GGNNCC 5 cut(s) 568, 1009, 1150, 1188, 1231
BspPI GGATC 3 cut(s) 126, 1003, 1265
BspQI GCTCTTC 1 cut(s) 51
BspTI CTTAAG 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 949
BsrI ACTGG 4 cut(s) 570, 692, 981, 1042
BssECI CCNNGG 6 cut(s) 245, 246, 289, 761, 772, 818
BssMI GATC 6 cut(s) 108, 118, 418, 995, 1270, 1283
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 7 cut(s) 247, 300, 306, 564, 762, 774, 1371
Bst4CI ACNGT 6 cut(s) 349, 384, 661, 1136, 1172, 1407
Bst6I CTCTTC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 2 cut(s) 605, 639
BstDSI CCRYGG 2 cut(s) 289, 818
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 4 cut(s) 225, 256, 285, 341
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 6 cut(s) 111, 121, 421, 998, 1273, 1286
BstMAI GTCTC 1 cut(s) 1396
BstMBI GATC 6 cut(s) 108, 118, 418, 995, 1270, 1283
BstMWI GCNNNNNNNGC 4 cut(s) 170, 236, 282, 1067
BstNI CCWGG 7 cut(s) 247, 300, 306, 564, 762, 774, 1371
BstSCI CCNGG 7 cut(s) 245, 298, 304, 562, 760, 772, 1369
BstV1I GCAGC 3 cut(s) 294, 588, 1411
BstX2I RGATCY 1 cut(s) 1270
BstYI RGATCY 1 cut(s) 1270
Bsu15I ATCGAT 1 cut(s) 210
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 5 cut(s) 132, 230, 309, 436, 1187
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 2 cut(s) 289, 818
BtsCI GGATG 4 cut(s) 225, 256, 285, 341
BtsI GCAGTG 4 cut(s) 111, 180, 283, 483
BtsIMutI CAGTG 8 cut(s) 111, 180, 283, 345, 396, 483, 988, 1177
Cac8I GCNNGC 1 cut(s) 540
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 2 cut(s) 111, 505
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 6 cut(s) 123, 302, 566, 1008, 1186, 1230
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 1 cut(s) 175
CsiI ACCWGGT 1 cut(s) 562
Csp6I GTAC 4 cut(s) 81, 373, 1023, 1176
CviAII CATG 4 cut(s) 112, 290, 506, 991
CviQI GTAC 4 cut(s) 81, 373, 1023, 1176
DdeI CTNAG 2 cut(s) 605, 639
DpnI GATC 6 cut(s) 110, 120, 420, 997, 1272, 1285
DpnII GATC 6 cut(s) 108, 118, 418, 995, 1270, 1283
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 773
Eco47I GGWCC 5 cut(s) 123, 302, 566, 1008, 1230
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 1230
EcoRI GAATTC 1 cut(s) 1291
EcoRII CCWGG 7 cut(s) 245, 298, 304, 562, 760, 772, 1369
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 773
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 4 cut(s) 115, 293, 509, 994
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 5 cut(s) 59, 403, 552, 852, 1021
FatI CATG 4 cut(s) 111, 289, 505, 990
FbaI TGATCA 2 cut(s) 108, 418
Fnu4HI GCNGC 5 cut(s) 34, 283, 310, 577, 1425
FokI GGATG 4 cut(s) 232, 263, 272, 328
FriOI GRGCYC 1 cut(s) 773
Fsp4HI GCNGC 5 cut(s) 34, 283, 310, 577, 1425
FspBI CTAG 1 cut(s) 1429
GlaI GCGC 1 cut(s) 62
GluI GCNGC 5 cut(s) 34, 283, 310, 577, 1425
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 2 cut(s) 282, 1059
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 5 cut(s) 132, 230, 309, 436, 1187
HapII CCGG 1 cut(s) 1152
HgaI GACGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 63
Hin1II CATG 4 cut(s) 115, 293, 509, 994
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 4 cut(s) 464, 829, 925, 1108
HpaII CCGG 1 cut(s) 1152
HphI GGTGA 4 cut(s) 421, 552, 934, 1139
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 8 cut(s) 10, 123, 469, 606, 930, 1240, 1297, 1348
Hpy188III TCNNGA 4 cut(s) 112, 367, 506, 999
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 4 cut(s) 109, 210, 1243, 1298
HpyCH4III ACNGT 6 cut(s) 349, 384, 661, 1136, 1172, 1407
HpyCH4IV ACGT 1 cut(s) 1025
HpyCH4V TGCA 3 cut(s) 4, 542, 1340
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 236, 282, 1067
HpyF3I CTNAG 2 cut(s) 605, 639
HpySE526I ACGT 1 cut(s) 1025
Hsp92II CATG 4 cut(s) 115, 293, 509, 994
HspAI GCGC 1 cut(s) 61
Ksp22I TGATCA 2 cut(s) 108, 418
Kzo9I GATC 6 cut(s) 108, 118, 418, 995, 1270, 1283
LguI GCTCTTC 1 cut(s) 51
Lsp1109I GCAGC 3 cut(s) 294, 588, 1411
LweI GCATC 2 cut(s) 294, 350
MabI ACCWGGT 1 cut(s) 562
MaeI CTAG 1 cut(s) 1429
MaeII ACGT 1 cut(s) 1025
MaeIII GTNAC 3 cut(s) 349, 359, 922
MalI GATC 6 cut(s) 110, 120, 420, 997, 1272, 1285
MboI GATC 6 cut(s) 108, 118, 418, 995, 1270, 1283
MboII GAAGA 5 cut(s) 68, 532, 1047, 1176, 1188
MflI RGATCY 1 cut(s) 1270
MhlI GDGCHC 2 cut(s) 139, 773
MlyI GAGTC 2 cut(s) 838, 919
MmeI TCCRAC 2 cut(s) 310, 643
MroXI GAANNNNTTC 1 cut(s) 967
MseI TTAA 7 cut(s) 495, 627, 726, 798, 954, 1044, 1395
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 1 cut(s) 1152
MspR9I CCNGG 7 cut(s) 247, 300, 306, 564, 762, 774, 1371
MvaI CCWGG 7 cut(s) 247, 300, 306, 564, 762, 774, 1371
MwoI GCNNNNNNNGC 4 cut(s) 170, 236, 282, 1067
NcoI CCATGG 1 cut(s) 289
NdeII GATC 6 cut(s) 108, 118, 418, 995, 1270, 1283
NlaIII CATG 4 cut(s) 115, 293, 509, 994
NlaIV GGNNCC 5 cut(s) 568, 1009, 1150, 1188, 1231
NmeAIII GCCGAG 1 cut(s) 462
NmuCI GTSAC 3 cut(s) 349, 359, 922
PagI TCATGA 2 cut(s) 111, 505
PasI CCCWGGG 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 967
PfeI GAWTC 2 cut(s) 464, 1108
PflFI GACNNNGTC 1 cut(s) 185
PflMI CCANNNNNTGG 2 cut(s) 698, 779
PkrI GCNGC 5 cut(s) 35, 284, 311, 578, 1426
PleI GAGTC 2 cut(s) 837, 919
PpsI GAGTC 2 cut(s) 837, 919
PpuMI RGGWCCY 1 cut(s) 1230
Psp5II RGGWCCY 1 cut(s) 1230
Psp6I CCWGG 7 cut(s) 245, 298, 304, 562, 760, 772, 1369
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 7 cut(s) 245, 298, 304, 562, 760, 772, 1369
PspN4I GGNNCC 5 cut(s) 568, 1009, 1150, 1188, 1231
PspPI GGNCC 6 cut(s) 123, 302, 566, 1008, 1186, 1230
PspPPI RGGWCCY 1 cut(s) 1230
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 1270
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 4 cut(s) 82, 374, 1024, 1177
RsaNI GTAC 4 cut(s) 81, 373, 1023, 1176
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 7 cut(s) 495, 627, 726, 798, 954, 1044, 1395
SatI GCNGC 5 cut(s) 34, 283, 310, 577, 1425
Sau3AI GATC 6 cut(s) 108, 118, 418, 995, 1270, 1283
Sau96I GGNCC 6 cut(s) 123, 302, 566, 1008, 1186, 1230
ScaI AGTACT 2 cut(s) 82, 374
SchI GAGTC 2 cut(s) 838, 919
ScrFI CCNGG 7 cut(s) 247, 300, 306, 564, 762, 774, 1371
SduI GDGCHC 2 cut(s) 139, 773
SexAI ACCWGGT 1 cut(s) 562
SfaNI GCATC 2 cut(s) 294, 350
SinI GGWCC 5 cut(s) 123, 302, 566, 1008, 1230
SmlI CTYRAG 2 cut(s) 494, 1071
SmoI CTYRAG 2 cut(s) 494, 1071
SsiI CCGC 3 cut(s) 33, 310, 1335
SspMI CTAG 1 cut(s) 1429
StyD4I CCNGG 7 cut(s) 245, 298, 304, 562, 760, 772, 1369
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 6 cut(s) 349, 384, 661, 1136, 1172, 1407
TaiI ACGT 1 cut(s) 1028
TaqI TCGA 4 cut(s) 210, 706, 1224, 1289
TatI WGTACW 2 cut(s) 80, 372
TauI GCSGC 2 cut(s) 36, 312
TfiI GAWTC 2 cut(s) 464, 1108
Tru1I TTAA 7 cut(s) 495, 627, 726, 798, 954, 1044, 1395
Tru9I TTAA 7 cut(s) 495, 627, 726, 798, 954, 1044, 1395
TscAI CASTG 8 cut(s) 111, 180, 283, 352, 403, 483, 988, 1177
TseFI GTSAC 3 cut(s) 349, 359, 922
TseI GCWGC 3 cut(s) 282, 576, 1424
Tsp45I GTSAC 3 cut(s) 349, 359, 922
TspDTI ATGAA 7 cut(s) 69, 128, 442, 494, 522, 764, 1188
TspRI CASTG 8 cut(s) 111, 180, 283, 352, 403, 483, 988, 1177
Tth111I GACNNNGTC 1 cut(s) 185
Van91I CCANNNNNTGG 2 cut(s) 698, 779
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 5 cut(s) 123, 302, 566, 1008, 1230
XagI CCTNNNNNAGG 1 cut(s) 585
XapI RAATTY 2 cut(s) 967, 1291
XcmI CCANNNNNNNNNTGG 1 cut(s) 988
XmnI GAANNNNTTC 1 cut(s) 967
XspI CTAG 1 cut(s) 1429
ZrmI AGTACT 2 cut(s) 82, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.