FvH4_6g41280

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
32497775 .. 32504609
6835 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41280.t1

Sequence Viewer

Length: 1416 bp
ATGCAATCCGACAGTGGTAAATTGTTTATTGGTGGCATATCTTGGGACACAAATGAAGATCGTCTGAAAGAGTATTTTAGTACCTTTGGGGAGGTGGTAGAAGCAGTGATCATGAAGGATCGAACTACAGGCCGTGCTCGTGGTTTTGGTTTTGTAGTTTTTGCTGACCCTACCATTGCGGACACTGTCATAATGGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCTAAAAAAGCTGTCCCTAGGGATGACCAGAACATTTTGAGTAGAAGCACTGTGAGCATCCAAGGTTCTCCAGGTCCAGGCCGAACAAGAAAGATTTTTGTTGGAGGTTTAGCATCCACTGTCACAGAGGGTGACTTCAAGAGTTACTTTGAACAGTTTGGGACAATCACAGATGTTGTAGTGATGTATGATCATAACACGCAGAGGCCTAGAGGCTTTGGTTTCATCACTTATGACTCAGAGGAAGCAGTGGATAAGGTTTTGCTTAAGACTTTTCATGAACTGAATGGGAAGATGGTTGAAGTCAAGCGTGCAGTTCCTAAAGAGTTATCACCTGGACCCAGTCGCAGCCCACTTGGAGGATATAACTATGGTCTGAGCAGGGTCAACAGCTTCCTTAATGGCTATACTCAGGGATATACTCCAAGTACAGTTGGAGGCTATGGTCTTGGTAGATTTAGTCCAGTTTCTGGTGGTCGAAGTGGGTTTCCTCCATTTGGTTCAGGTTATGGAGTGGGAATGAACTTTGAGCCTGGTCTGAACCCAGGTTTTGGAGGAAGTGCAAATTATAATAGTAATGTCAGCTATGGGCGTGGAGTGAGCCCTTATTATATCAATAATTCAAATAGGTTTAGCAGTCCCATTGGATATGATGGTGGTAATGGAGGAAACTCATCCTTTTTCAGCTCCATGACACGGAGTTTGTGGGGGAATGGGGAGCTCAATACAAATTCTTCAAATTCCAATGCTTACATGGGTTCAGGAAGTGGCAGCATTGGTGGAAGCACATTTGGCAATACTGGAGTTAACTGGCGGTCTTCGGCAATTTCACCTCAAGGTGGAGGAAATAATGTTTCTAACAATAGTGCGAATCTTGGTTATGGAGCCGGTGACAACAGTTACGGTTTGGGAGCGGGAGGGTATGGAAGGAACAGTGGTACAGCCCCTGCGTCATCGTTTGCTGCATCAAATGGTGGGTTTGATGGAGCCTTCAATGACTTTTACAGTAGTGGTTCAGTTTATGGAGATCCCACTTGGCGATCATCAAATTCCGAGCGAGATGGTCCCGGACCCTTTGGTTATGGACTTGGCAGTGCAGCTTCTGACGTTTCAGCTAAAAGCTCTCCTGGTTATGTTGGTGGATATAGTGTTAATAAGAGACAGTCAAATACAGGAATTGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

49.36

Weight (kDa)

8.44

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 8 - 68 1.1e-15 RNA recognition motif
RRM_7 PF16367 106 - 176 4e-06 RNA recognition motif
RRM_1 PF00076 108 - 165 2.3e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AccB7I CCANNNNNTGG 2 cut(s) 698, 779
AccBSI CCGCTC 1 cut(s) 1142
AciI CCGC 3 cut(s) 179, 1042, 1142
AclWI GGATC 2 cut(s) 126, 1250
AcsI RAATTY 3 cut(s) 958, 967, 1276
AfaI GTAC 3 cut(s) 82, 658, 1168
AfiI CCNNNNNNNGG 7 cut(s) 305, 587, 698, 725, 779, 924, 1067
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 6 cut(s) 367, 380, 530, 852, 966, 1222
AjnI CCWGG 6 cut(s) 298, 304, 562, 760, 772, 1354
AluBI AGCT 8 cut(s) 239, 621, 813, 915, 949, 1328, 1343, 1350
AluI AGCT 8 cut(s) 239, 621, 813, 915, 949, 1328, 1343, 1350
Alw21I GWGCWC 2 cut(s) 139, 951
Alw26I GTCTC 1 cut(s) 1381
AlwI GGATC 2 cut(s) 126, 1250
AlwNI CAGNNNCTG 3 cut(s) 698, 1175, 1331
AoxI GGCC 3 cut(s) 130, 307, 434
ApeKI GCWGC 5 cut(s) 576, 999, 1190, 1325, 1409
ApoI RAATTY 3 cut(s) 958, 967, 1276
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
AspA2I CCTAGG 1 cut(s) 245
AspS9I GGNCC 4 cut(s) 302, 566, 1292, 1298
AsuC2I CCSGG 1 cut(s) 1296
AsuHPI GGTGA 4 cut(s) 371, 552, 1050, 1130
AvaII GGWCC 4 cut(s) 302, 566, 1292, 1298
AvrII CCTAGG 1 cut(s) 245
BanII GRGCYC 2 cut(s) 833, 951
BauI CACGAG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 1038
Bbv12I GWGCWC 2 cut(s) 139, 951
BbvI GCAGC 5 cut(s) 588, 1011, 1177, 1337, 1396
BccI CCATC 5 cut(s) 214, 517, 875, 1205, 1283
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 6 cut(s) 300, 306, 564, 762, 774, 1356
BclI TGATCA 2 cut(s) 108, 418
BcnI CCSGG 1 cut(s) 1296
BcoDI GTCTC 1 cut(s) 1381
BfaI CTAG 3 cut(s) 246, 438, 1414
BfmI CTRYAG 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 494
BisI GCNGC 5 cut(s) 577, 1000, 1191, 1326, 1410
BlnI CCTAGG 1 cut(s) 245
BlsI GCNGC 5 cut(s) 578, 1001, 1192, 1327, 1411
Bme1390I CCNGG 7 cut(s) 300, 306, 564, 762, 774, 1296, 1356
Bme18I GGWCC 4 cut(s) 302, 566, 1292, 1298
BmgT120I GGNCC 4 cut(s) 302, 566, 1292, 1298
BmiI GGNNCC 5 cut(s) 568, 1114, 1216, 1294, 1300
BmrFI CCNGG 7 cut(s) 300, 306, 564, 762, 774, 1296, 1356
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 3 cut(s) 294, 350, 1202
BmuI ACTGGG 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 1038
BpmI CTGGAG 2 cut(s) 282, 1050
BpuEI CTTGAG 1 cut(s) 1047
BpuMI CCSGG 1 cut(s) 1296
BsaJI CCNNGG 3 cut(s) 245, 289, 772
Bsc4I CCNNNNNNNGG 7 cut(s) 305, 587, 698, 725, 779, 924, 1067
Bse118I RCCGGY 1 cut(s) 1115
Bse1I ACTGG 4 cut(s) 570, 692, 1033, 1043
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 6 cut(s) 300, 306, 564, 762, 774, 1356
BseDI CCNNGG 3 cut(s) 245, 289, 772
BseGI GGATG 5 cut(s) 225, 256, 285, 341, 902
BseLI CCNNNNNNNGG 7 cut(s) 305, 587, 698, 725, 779, 924, 1067
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 3 cut(s) 480, 596, 653
BseNI ACTGG 4 cut(s) 570, 692, 1033, 1043
BseXI GCAGC 5 cut(s) 588, 1011, 1177, 1337, 1396
BsgI GTGCAG 2 cut(s) 561, 1344
BshFI GGCC 3 cut(s) 132, 309, 436
BsiHKAI GWGCWC 2 cut(s) 139, 951
BsiSI CCGG 2 cut(s) 1116, 1296
BslFI GGGAC 5 cut(s) 59, 227, 403, 852, 1278
BslI CCNNNNNNNGG 7 cut(s) 305, 587, 698, 725, 779, 924, 1067
BsmAI GTCTC 1 cut(s) 1381
BsmFI GGGAC 5 cut(s) 59, 227, 403, 852, 1278
BsnI GGCC 3 cut(s) 132, 309, 436
Bsp1286I GDGCHC 3 cut(s) 139, 833, 951
Bsp143I GATC 6 cut(s) 58, 108, 118, 418, 1255, 1268
BspACI CCGC 3 cut(s) 179, 1042, 1142
BspANI GGCC 3 cut(s) 132, 309, 436
BspCNI CTCAG 3 cut(s) 479, 597, 652
BspHI TCATGA 2 cut(s) 111, 505
BspLI GGNNCC 5 cut(s) 568, 1114, 1216, 1294, 1300
BspPI GGATC 2 cut(s) 126, 1250
BspTI CTTAAG 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 1142
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 1115
BsrI ACTGG 4 cut(s) 570, 692, 1033, 1043
BssAI RCCGGY 1 cut(s) 1115
BssECI CCNNGG 3 cut(s) 245, 289, 772
BssMI GATC 6 cut(s) 58, 108, 118, 418, 1255, 1268
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 2 cut(s) 245, 289
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 6 cut(s) 300, 306, 564, 762, 774, 1356
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 3 cut(s) 466, 605, 639
BstF5I GGATG 5 cut(s) 225, 256, 285, 341, 902
BstKTI GATC 6 cut(s) 61, 111, 121, 421, 1258, 1271
BstMAI GTCTC 1 cut(s) 1381
BstMBI GATC 6 cut(s) 58, 108, 118, 418, 1255, 1268
BstMWI GCNNNNNNNGC 3 cut(s) 236, 282, 1020
BstNI CCWGG 6 cut(s) 300, 306, 564, 762, 774, 1356
BstSCI CCNGG 7 cut(s) 298, 304, 562, 760, 772, 1294, 1354
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 5 cut(s) 588, 1011, 1177, 1337, 1396
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 1 cut(s) 1255
BstYI RGATCY 1 cut(s) 1255
BsuRI GGCC 3 cut(s) 132, 309, 436
BtsCI GGATG 5 cut(s) 225, 256, 285, 341, 902
BtsI GCAGTG 3 cut(s) 111, 483, 1327
BtsIMutI CAGTG 8 cut(s) 19, 111, 183, 276, 345, 483, 1168, 1327
Cac8I GCNNGC 1 cut(s) 540
CaiI CAGNNNCTG 3 cut(s) 698, 1175, 1331
CciI TCATGA 2 cut(s) 111, 505
Cfr10I RCCGGY 1 cut(s) 1115
Cfr13I GGNCC 4 cut(s) 302, 566, 1292, 1298
CseI GACGC 1 cut(s) 1167
Csp6I GTAC 3 cut(s) 81, 657, 1167
CviAII CATG 4 cut(s) 112, 506, 919, 982
CviQI GTAC 3 cut(s) 81, 657, 1167
DdeI CTNAG 3 cut(s) 466, 605, 639
DpnI GATC 6 cut(s) 60, 110, 120, 420, 1257, 1270
DpnII GATC 6 cut(s) 58, 108, 118, 418, 1255, 1268
Ecl136II GAGCTC 1 cut(s) 949
Eco130I CCWWGG 2 cut(s) 245, 289
Eco147I AGGCCT 1 cut(s) 436
Eco24I GRGCYC 2 cut(s) 833, 951
Eco47I GGWCC 4 cut(s) 302, 566, 1292, 1298
Eco53kI GAGCTC 1 cut(s) 949
EcoICRI GAGCTC 1 cut(s) 949
EcoRII CCWGG 6 cut(s) 298, 304, 562, 760, 772, 1354
EcoT14I CCWWGG 2 cut(s) 245, 289
EcoT38I GRGCYC 2 cut(s) 833, 951
ErhI CCWWGG 2 cut(s) 245, 289
FaeI CATG 4 cut(s) 115, 509, 922, 985
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 5 cut(s) 59, 227, 403, 852, 1278
FatI CATG 4 cut(s) 111, 505, 918, 981
FauI CCCGC 1 cut(s) 1135
FbaI TGATCA 2 cut(s) 108, 418
Fnu4HI GCNGC 5 cut(s) 577, 1000, 1191, 1326, 1410
FokI GGATG 5 cut(s) 232, 263, 272, 328, 889
FriOI GRGCYC 2 cut(s) 833, 951
Fsp4HI GCNGC 5 cut(s) 577, 1000, 1191, 1326, 1410
FspBI CTAG 3 cut(s) 246, 438, 1414
GluI GCNGC 5 cut(s) 577, 1000, 1191, 1326, 1410
GsuI CTGGAG 2 cut(s) 282, 1050
HaeIII GGCC 3 cut(s) 132, 309, 436
HapII CCGG 2 cut(s) 1116, 1296
HgaI GACGC 1 cut(s) 1167
Hin1II CATG 4 cut(s) 115, 509, 922, 985
HincII GTYRAC 2 cut(s) 616, 1036
HindII GTYRAC 2 cut(s) 616, 1036
HinfI GANTC 2 cut(s) 464, 1099
HpaI GTTAAC 1 cut(s) 1036
HpaII CCGG 2 cut(s) 1116, 1296
HphI GGTGA 4 cut(s) 371, 552, 1050, 1130
Hpy166II GTNNAC 2 cut(s) 616, 1036
Hpy188I TCNGA 7 cut(s) 10, 66, 469, 606, 768, 1282, 1333
Hpy188III TCNNGA 4 cut(s) 112, 367, 506, 990
Hpy8I GTNNAC 2 cut(s) 616, 1036
HpyAV CCTTC 4 cut(s) 109, 210, 1149, 1228
HpyCH4IV ACGT 1 cut(s) 1335
HpyCH4V TGCA 5 cut(s) 4, 542, 791, 1193, 1325
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 282, 1020
HpyF3I CTNAG 3 cut(s) 466, 605, 639
HpySE526I ACGT 1 cut(s) 1335
Hsp92II CATG 4 cut(s) 115, 509, 922, 985
Ksp22I TGATCA 2 cut(s) 108, 418
KspAI GTTAAC 1 cut(s) 1036
Kzo9I GATC 6 cut(s) 58, 108, 118, 418, 1255, 1268
LmnI GCTCC 5 cut(s) 920, 946, 1112, 1139, 1214
Lsp1109I GCAGC 5 cut(s) 588, 1011, 1177, 1337, 1396
LweI GCATC 3 cut(s) 294, 350, 1202
MaeI CTAG 3 cut(s) 246, 438, 1414
MaeII ACGT 1 cut(s) 1335
MaeIII GTNAC 5 cut(s) 349, 359, 371, 1118, 1127
MalI GATC 6 cut(s) 60, 110, 120, 420, 1257, 1270
MbiI CCGCTC 1 cut(s) 1142
MboI GATC 6 cut(s) 58, 108, 118, 418, 1255, 1268
MboII GAAGA 4 cut(s) 68, 532, 954, 1038
MflI RGATCY 1 cut(s) 1255
MhlI GDGCHC 3 cut(s) 139, 833, 951
MluCI AATT 8 cut(s) 20, 793, 847, 958, 967, 1053, 1276, 1404
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 3 cut(s) 33, 310, 643
MseI TTAA 4 cut(s) 495, 627, 1035, 1380
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 2 cut(s) 1116, 1296
MspR9I CCNGG 7 cut(s) 300, 306, 564, 762, 774, 1296, 1356
MvaI CCWGG 6 cut(s) 300, 306, 564, 762, 774, 1356
MwoI GCNNNNNNNGC 3 cut(s) 236, 282, 1020
NciI CCSGG 1 cut(s) 1296
NdeII GATC 6 cut(s) 58, 108, 118, 418, 1255, 1268
NlaIII CATG 4 cut(s) 115, 509, 922, 985
NlaIV GGNNCC 5 cut(s) 568, 1114, 1216, 1294, 1300
NmuCI GTSAC 3 cut(s) 349, 359, 1118
PagI TCATGA 2 cut(s) 111, 505
PceI AGGCCT 1 cut(s) 436
PfeI GAWTC 1 cut(s) 1099
PflFI GACNNNGTC 2 cut(s) 185, 570
PflMI CCANNNNNTGG 2 cut(s) 698, 779
PfoI TCCNGGA 1 cut(s) 1294
PkrI GCNGC 5 cut(s) 578, 1001, 1192, 1327, 1411
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
PsiI TTATAA 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 951
Psp6I CCWGG 6 cut(s) 298, 304, 562, 760, 772, 1354
PspGI CCWGG 6 cut(s) 298, 304, 562, 760, 772, 1354
PspN4I GGNNCC 5 cut(s) 568, 1114, 1216, 1294, 1300
PspPI GGNCC 4 cut(s) 302, 566, 1292, 1298
PstNI CAGNNNCTG 3 cut(s) 698, 1175, 1331
PsuI RGATCY 1 cut(s) 1255
PsyI GACNNNGTC 2 cut(s) 185, 570
RsaI GTAC 3 cut(s) 82, 658, 1168
RsaNI GTAC 3 cut(s) 81, 657, 1167
SacI GAGCTC 1 cut(s) 951
SaqAI TTAA 4 cut(s) 495, 627, 1035, 1380
SatI GCNGC 5 cut(s) 577, 1000, 1191, 1326, 1410
Sau3AI GATC 6 cut(s) 58, 108, 118, 418, 1255, 1268
Sau96I GGNCC 4 cut(s) 302, 566, 1292, 1298
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 7 cut(s) 300, 306, 564, 762, 774, 1296, 1356
SduI GDGCHC 3 cut(s) 139, 833, 951
SfaNI GCATC 3 cut(s) 294, 350, 1202
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 4 cut(s) 302, 566, 1292, 1298
SmlI CTYRAG 2 cut(s) 494, 1062
SmoI CTYRAG 2 cut(s) 494, 1062
Sse9I AATT 8 cut(s) 20, 793, 847, 958, 967, 1053, 1276, 1404
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 3 cut(s) 179, 1042, 1142
SspMI CTAG 3 cut(s) 246, 438, 1414
SstI GAGCTC 1 cut(s) 951
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 7 cut(s) 298, 304, 562, 760, 772, 1294, 1354
StyI CCWWGG 2 cut(s) 245, 289
TaiI ACGT 1 cut(s) 1338
TaqI TCGA 2 cut(s) 121, 706
TasI AATT 8 cut(s) 20, 793, 847, 958, 967, 1053, 1276, 1404
TatI WGTACW 1 cut(s) 656
TfiI GAWTC 1 cut(s) 1099
Tru1I TTAA 4 cut(s) 495, 627, 1035, 1380
Tru9I TTAA 4 cut(s) 495, 627, 1035, 1380
TscAI CASTG 8 cut(s) 19, 111, 190, 283, 352, 483, 1168, 1327
TseFI GTSAC 3 cut(s) 349, 359, 1118
TseI GCWGC 5 cut(s) 576, 999, 1190, 1325, 1409
Tsp45I GTSAC 3 cut(s) 349, 359, 1118
TspDTI ATGAA 6 cut(s) 69, 128, 442, 494, 522, 764
TspGWI ACGGA 2 cut(s) 228, 940
TspRI CASTG 8 cut(s) 19, 111, 190, 283, 352, 483, 1168, 1327
Tth111I GACNNNGTC 2 cut(s) 185, 570
Van91I CCANNNNNTGG 2 cut(s) 698, 779
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 4 cut(s) 302, 566, 1292, 1298
XapI RAATTY 3 cut(s) 958, 967, 1276
XcmI CCANNNNNNNNNTGG 1 cut(s) 979
XmaJI CCTAGG 1 cut(s) 245
XspI CTAG 3 cut(s) 246, 438, 1414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.