Prupe.3G202900_v2.0.a1

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
21068852 .. 21075383
6532 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G202900.3

Sequence Viewer

Length: 1464 bp
ATGCAATCCGATAGTGGTAAGTTGTTTATTGGCGGCATATCGTGGGACACAAATGAAGAGCGTCTGAAAGAGTATTTCAGCAGTTTTGGGGAGGTGGTAGAAGCGGTGATCATGAAGGATCGGACCACCGGCCGTGCTCGTGGTTTTGGTTTTGTAGTTTTTGCAGACCCAGCTGTTGCGGACAGTGTCATAATGGAGAAGCACAACATTGATGGGAGGATGGTTGAAGCAAAAAAGGCTGTTCCCAGGGATGACCAGAATATTTTGGGTAGAACCAGTGGCAGCATCCATGGTTCTCCAGGTCCAGGTCGCACAAGAAAGATTTTTGTTGGAGGTTTAGCATCCACTGTCACGGAGAGTGACTTCAAGAAGTACTTTGAACAGTTTGGGACAATCACAGATGTTGTGGTGATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTCATTACTTATGATTCAGAAGAGGCAGTGGACAAGGTTTTGCTTAAGACATTTCATGAACTGAATGGGAAGATGGTTGAAGTCAAGCGTGCAGTTCCTAAAGAGTTATCACCTGGTCCCAGTCGCAGCCCTCTTGGAGGATACAACTGTGGTCTGAGTAGGGTTAATAGCTTCCTGAATGGCTACACACAGGGGTATAATCCTAGTACAGTTGGAGGCTATGGACTTGGTAGATTCAGTCCAGTTGCAAGTGGTCGAAGTGGGTTTCCTCCATTTGCTTCTGGTTATGGAATGGGTATGAATTATGAGCCAGGGTTGAGCCCAGGTTTTGGAGGAAATGCAAATTTTAATAGTAATATCAGCTACGGACGGGGGTTGAGTCCTTATTATGTCAATAATTCTAATAGGTTTAGCAGTCCCATTGGGTATGATGGTGGTAACGGAGGAAACACATCTTCTTTTTTCAGTTCTGTGACTCGGAATTTGTGGGCAAATGGGGGGCTTAATTATGGAACAAACTCCACAGGTTCCAGTGCTTACAATGGATCTGGAAGTGGGAGCATTGGAGGAAGTACATTTGGAAACACTGGAGTTAATTGGCGTTCTTCGGCAATTTCAGCTCAAGGTGGGGGAAATAATGTTCCGAACAATAGTGGGAGTCTTGGTTATGGAGCTGGTGATAACAGTTATGGTTTGGGAAGCGGAGGGTATGGAAGAAACAATGGAACAAGTGCGACCCCTACATCCTCATTTGCTGCATCAAATGGTGGTTTTGATGGGGCATTCGCTGACTTTTACACTAGTGGTTCAGTTTATGGAGATCCCACTTGGCGTTCATCAAATTCCGAGCGAGATGGGCCTGGTCCCTTTGGTTATGGCCTCGGTGGTGCAGCTTCTGATGTTTCAGCTAAAAGTTCTCCTGGTTATGTCGGTGGTTATAGTGTTAATAAGAGACAGCCAAATACAGGGACCAGGGACCGTTTTTCCCCTCATAATTTGTATGGATGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

51.04

Weight (kDa)

8.91

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 779
AciI CCGC 4 cut(s) 33, 104, 179, 1152
AclWI GGATC 3 cut(s) 126, 1003, 1265
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 3 cut(s) 793, 931, 1291
AfaI GTAC 3 cut(s) 374, 658, 1024
AfiI CCNNNNNNNGG 4 cut(s) 305, 587, 779, 1415
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 4 cut(s) 227, 367, 380, 530
AhlI ACTAGT 1 cut(s) 1250
AjnI CCWGG 9 cut(s) 245, 298, 304, 562, 760, 772, 1309, 1369, 1421
AloI GAACNNNNNNTCC 2 cut(s) 1074, 1106
AluBI AGCT 7 cut(s) 173, 621, 813, 1070, 1124, 1343, 1358
AluI AGCT 7 cut(s) 173, 621, 813, 1070, 1124, 1343, 1358
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 1396
AlwI GGATC 3 cut(s) 126, 1003, 1265
AlwNI CAGNNNCTG 1 cut(s) 1346
AoxI GGCC 4 cut(s) 130, 434, 1307, 1327
ApeKI GCWGC 4 cut(s) 282, 576, 1205, 1340
ApoI RAATTY 3 cut(s) 793, 931, 1291
ArsI GACNNNNNNTTYG 2 cut(s) 916, 948
AspS9I GGNCC 7 cut(s) 123, 302, 566, 1307, 1313, 1419, 1426
AsuHPI GGTGA 4 cut(s) 118, 421, 552, 1139
AvaII GGWCC 6 cut(s) 123, 302, 566, 1313, 1419, 1426
BaeI ACNNNNGTAYC 2 cut(s) 583, 616
BanII GRGCYC 1 cut(s) 773
BauI CACGAG 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 4 cut(s) 294, 588, 1192, 1352
BccI CCATC 6 cut(s) 206, 214, 517, 875, 1220, 1298
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 9 cut(s) 247, 300, 306, 564, 762, 774, 1311, 1371, 1423
BciVI GTATCC 1 cut(s) 584
BclI TGATCA 2 cut(s) 108, 418
BcoDI GTCTC 1 cut(s) 1396
BcuI ACTAGT 1 cut(s) 1250
BfaI CTAG 2 cut(s) 654, 1251
BfrI CTTAAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 584
BisI GCNGC 5 cut(s) 34, 283, 577, 1206, 1341
BlsI GCNGC 5 cut(s) 35, 284, 578, 1207, 1342
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 9 cut(s) 247, 300, 306, 564, 762, 774, 1311, 1371, 1423
Bme18I GGWCC 6 cut(s) 123, 302, 566, 1313, 1419, 1426
BmgT120I GGNCC 7 cut(s) 123, 302, 566, 1307, 1313, 1419, 1426
BmiI GGNNCC 5 cut(s) 568, 979, 1315, 1420, 1427
BmrFI CCNGG 9 cut(s) 247, 300, 306, 564, 762, 774, 1311, 1371, 1423
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 3 cut(s) 294, 350, 1217
BmuI ACTGGG 1 cut(s) 564
BpmI CTGGAG 2 cut(s) 282, 1059
BpuEI CTTGAG 1 cut(s) 1056
BsaJI CCNNGG 7 cut(s) 245, 246, 289, 761, 772, 1330, 1422
BsaXI ACNNNNNCTCC 2 cut(s) 1099, 1129
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 587, 779, 1415
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 5 cut(s) 276, 570, 692, 981, 1042
BseBI CCWGG 9 cut(s) 247, 300, 306, 564, 762, 774, 1311, 1371, 1423
BseDI CCNNGG 7 cut(s) 245, 246, 289, 761, 772, 1330, 1422
BseGI GGATG 6 cut(s) 225, 256, 285, 341, 1193, 1460
BseLI CCNNNNNNNGG 4 cut(s) 305, 587, 779, 1415
BseMII CTCAG 2 cut(s) 443, 596
BseNI ACTGG 5 cut(s) 276, 570, 692, 981, 1042
BseX3I CGGCCG 1 cut(s) 130
BseXI GCAGC 4 cut(s) 294, 588, 1192, 1352
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 2 cut(s) 561, 1359
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 4 cut(s) 132, 436, 1309, 1329
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 7 cut(s) 59, 403, 552, 852, 1299, 1432, 1439
BslI CCNNNNNNNGG 4 cut(s) 305, 587, 779, 1415
BsmAI GTCTC 1 cut(s) 1396
BsmFI GGGAC 7 cut(s) 59, 403, 552, 852, 1299, 1432, 1439
BsmI GAATGC 1 cut(s) 1232
BsnI GGCC 4 cut(s) 132, 436, 1309, 1329
Bsp1286I GDGCHC 2 cut(s) 139, 773
Bsp143I GATC 5 cut(s) 108, 118, 418, 995, 1270
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 4 cut(s) 33, 104, 179, 1152
BspANI GGCC 4 cut(s) 132, 436, 1309, 1329
BspCNI CTCAG 2 cut(s) 442, 597
BspHI TCATGA 2 cut(s) 111, 505
BspLI GGNNCC 5 cut(s) 568, 979, 1315, 1420, 1427
BspPI GGATC 3 cut(s) 126, 1003, 1265
BspQI GCTCTTC 1 cut(s) 51
BspTI CTTAAG 1 cut(s) 494
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 5 cut(s) 276, 570, 692, 981, 1042
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 7 cut(s) 245, 246, 289, 761, 772, 1330, 1422
BssMI GATC 5 cut(s) 108, 118, 418, 995, 1270
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 9 cut(s) 247, 300, 306, 564, 762, 774, 1311, 1371, 1423
Bst4CI ACNGT 7 cut(s) 185, 349, 384, 599, 661, 1136, 1430
Bst6I CTCTTC 2 cut(s) 51, 465
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 2 cut(s) 429, 605
BstDSI CCRYGG 1 cut(s) 289
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 6 cut(s) 225, 256, 285, 341, 1193, 1460
BstKTI GATC 5 cut(s) 111, 121, 421, 998, 1273
BstMAI GTCTC 1 cut(s) 1396
BstMBI GATC 5 cut(s) 108, 118, 418, 995, 1270
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 4 cut(s) 170, 236, 1067, 1306
BstNI CCWGG 9 cut(s) 247, 300, 306, 564, 762, 774, 1311, 1371, 1423
BstSCI CCNGG 9 cut(s) 245, 298, 304, 562, 760, 772, 1309, 1369, 1421
BstV1I GCAGC 4 cut(s) 294, 588, 1192, 1352
BstX2I RGATCY 2 cut(s) 995, 1270
BstYI RGATCY 2 cut(s) 995, 1270
BstZI CGGCCG 1 cut(s) 130
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 4 cut(s) 132, 436, 1309, 1329
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 6 cut(s) 225, 256, 285, 341, 1193, 1460
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 6 cut(s) 190, 283, 345, 483, 988, 1035
Cac8I GCNNGC 1 cut(s) 540
CaiI CAGNNNCTG 1 cut(s) 1346
CciI TCATGA 2 cut(s) 111, 505
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 7 cut(s) 123, 302, 566, 1307, 1313, 1419, 1426
CseI GACGC 1 cut(s) 50
CsiI ACCWGGT 1 cut(s) 562
Csp6I GTAC 3 cut(s) 373, 657, 1023
CviAII CATG 3 cut(s) 112, 290, 506
CviQI GTAC 3 cut(s) 373, 657, 1023
DdeI CTNAG 2 cut(s) 429, 605
DpnI GATC 5 cut(s) 110, 120, 420, 997, 1272
DpnII GATC 5 cut(s) 108, 118, 418, 995, 1270
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 51, 465
EarI CTCTTC 2 cut(s) 51, 465
EclXI CGGCCG 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 773
Eco47I GGWCC 6 cut(s) 123, 302, 566, 1313, 1419, 1426
Eco52I CGGCCG 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoRII CCWGG 9 cut(s) 245, 298, 304, 562, 760, 772, 1309, 1369, 1421
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 773
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 3 cut(s) 115, 293, 509
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 7 cut(s) 59, 403, 552, 852, 1299, 1432, 1439
FatI CATG 3 cut(s) 111, 289, 505
FbaI TGATCA 2 cut(s) 108, 418
Fnu4HI GCNGC 5 cut(s) 34, 283, 577, 1206, 1341
FokI GGATG 5 cut(s) 232, 263, 272, 328, 1180
FriOI GRGCYC 1 cut(s) 773
Fsp4HI GCNGC 5 cut(s) 34, 283, 577, 1206, 1341
FspBI CTAG 2 cut(s) 654, 1251
GluI GCNGC 5 cut(s) 34, 283, 577, 1206, 1341
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 2 cut(s) 282, 1059
HaeIII GGCC 4 cut(s) 132, 436, 1309, 1329
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 50
Hin1II CATG 3 cut(s) 115, 293, 509
HinfI GANTC 6 cut(s) 450, 464, 684, 829, 925, 1108
HpaII CCGG 1 cut(s) 129
HphI GGTGA 4 cut(s) 118, 421, 552, 1139
Hpy166II GTNNAC 1 cut(s) 481
Hpy188III TCNNGA 5 cut(s) 112, 367, 506, 625, 999
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 7 cut(s) 185, 349, 384, 599, 661, 1136, 1430
HpyCH4V TGCA 7 cut(s) 4, 164, 542, 698, 791, 1208, 1340
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 236, 1067, 1306
HpyF3I CTNAG 2 cut(s) 429, 605
Hsp92II CATG 3 cut(s) 115, 293, 509
Ksp22I TGATCA 2 cut(s) 108, 418
Kzo9I GATC 5 cut(s) 108, 118, 418, 995, 1270
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 1008, 1121
Lsp1109I GCAGC 4 cut(s) 294, 588, 1192, 1352
LweI GCATC 3 cut(s) 294, 350, 1217
MabI ACCWGGT 1 cut(s) 562
MaeI CTAG 2 cut(s) 654, 1251
MaeIII GTNAC 4 cut(s) 349, 359, 887, 922
MalI GATC 5 cut(s) 110, 120, 420, 997, 1272
MboI GATC 5 cut(s) 108, 118, 418, 995, 1270
MboII GAAGA 6 cut(s) 68, 482, 532, 897, 1047, 1176
MflI RGATCY 2 cut(s) 995, 1270
MhlI GDGCHC 2 cut(s) 139, 773
MluCI AATT 9 cut(s) 751, 793, 847, 931, 955, 1045, 1062, 1291, 1444
MlyI GAGTC 3 cut(s) 838, 919, 1117
MmeI TCCRAC 2 cut(s) 310, 643
MseI TTAA 6 cut(s) 495, 615, 798, 954, 1044, 1395
MspA1I CMGCKG 1 cut(s) 173
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 9 cut(s) 247, 300, 306, 564, 762, 774, 1311, 1371, 1423
Mva1269I GAATGC 1 cut(s) 1232
MvaI CCWGG 9 cut(s) 247, 300, 306, 564, 762, 774, 1311, 1371, 1423
MwoI GCNNNNNNNGC 4 cut(s) 170, 236, 1067, 1306
NcoI CCATGG 1 cut(s) 289
NdeII GATC 5 cut(s) 108, 118, 418, 995, 1270
NlaIII CATG 3 cut(s) 115, 293, 509
NlaIV GGNNCC 5 cut(s) 568, 979, 1315, 1420, 1427
NmuCI GTSAC 3 cut(s) 349, 359, 922
PagI TCATGA 2 cut(s) 111, 505
PasI CCCWGGG 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 1 cut(s) 1232
PfeI GAWTC 3 cut(s) 450, 464, 684
PflFI GACNNNGTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 779
PkrI GCNGC 5 cut(s) 35, 284, 578, 1207, 1342
PleI GAGTC 3 cut(s) 837, 919, 1116
PpsI GAGTC 3 cut(s) 837, 919, 1116
Psp6I CCWGG 9 cut(s) 245, 298, 304, 562, 760, 772, 1309, 1369, 1421
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 9 cut(s) 245, 298, 304, 562, 760, 772, 1309, 1369, 1421
PspN4I GGNNCC 5 cut(s) 568, 979, 1315, 1420, 1427
PspPI GGNCC 7 cut(s) 123, 302, 566, 1307, 1313, 1419, 1426
PstNI CAGNNNCTG 1 cut(s) 1346
PsuI RGATCY 2 cut(s) 995, 1270
PsyI GACNNNGTC 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 3 cut(s) 374, 658, 1024
RsaNI GTAC 3 cut(s) 373, 657, 1023
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 6 cut(s) 495, 615, 798, 954, 1044, 1395
SatI GCNGC 5 cut(s) 34, 283, 577, 1206, 1341
Sau3AI GATC 5 cut(s) 108, 118, 418, 995, 1270
Sau96I GGNCC 7 cut(s) 123, 302, 566, 1307, 1313, 1419, 1426
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 3 cut(s) 838, 919, 1117
ScrFI CCNGG 9 cut(s) 247, 300, 306, 564, 762, 774, 1311, 1371, 1423
SduI GDGCHC 2 cut(s) 139, 773
SexAI ACCWGGT 1 cut(s) 562
SfaNI GCATC 3 cut(s) 294, 350, 1217
SinI GGWCC 6 cut(s) 123, 302, 566, 1313, 1419, 1426
SmlI CTYRAG 2 cut(s) 494, 1071
SmoI CTYRAG 2 cut(s) 494, 1071
SpeI ACTAGT 1 cut(s) 1250
Sse9I AATT 9 cut(s) 751, 793, 847, 931, 955, 1045, 1062, 1291, 1444
SsiI CCGC 4 cut(s) 33, 104, 179, 1152
SspI AATATT 1 cut(s) 262
SspMI CTAG 2 cut(s) 654, 1251
StyD4I CCNGG 9 cut(s) 245, 298, 304, 562, 760, 772, 1309, 1369, 1421
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 7 cut(s) 185, 349, 384, 599, 661, 1136, 1430
TaqI TCGA 1 cut(s) 706
TasI AATT 9 cut(s) 751, 793, 847, 931, 955, 1045, 1062, 1291, 1444
TatI WGTACW 3 cut(s) 372, 656, 1022
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 3 cut(s) 450, 464, 684
Tru1I TTAA 6 cut(s) 495, 615, 798, 954, 1044, 1395
Tru9I TTAA 6 cut(s) 495, 615, 798, 954, 1044, 1395
TscAI CASTG 6 cut(s) 190, 283, 352, 483, 988, 1042
TseFI GTSAC 3 cut(s) 349, 359, 922
TseI GCWGC 4 cut(s) 282, 576, 1205, 1340
Tsp45I GTSAC 3 cut(s) 349, 359, 922
TspDTI ATGAA 8 cut(s) 69, 128, 442, 494, 522, 764, 1275, 1449
TspGWI ACGGA 3 cut(s) 368, 831, 906
TspRI CASTG 6 cut(s) 190, 283, 352, 483, 988, 1042
Tth111I GACNNNGTC 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 779
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 6 cut(s) 123, 302, 566, 1313, 1419, 1426
XagI CCTNNNNNAGG 1 cut(s) 585
XapI RAATTY 3 cut(s) 793, 931, 1291
XspI CTAG 2 cut(s) 654, 1251
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.