Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002028

Physical Location & Seq

Genomic Coordinates Reverse (-)

9590982 .. 9596535

Gene Structure 5554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1112100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCCAAAAGGGCTGTTCCAAGGGATGACCAAAACATATTGGGAAGAAGCAGTGGCAGCATCCATGGTTCTCCAGGTCCAGGCCGCACAAGAAAAATTTTCGTTGGAGGTTTAGCATCCACTGTCACAGAGAGTGACTTCAAGAAGTACTTTGAGCAGTTTGGGACAATCACAGATGTTGTGGTGATGTATGATCACAACACCCAGAGACCGAGAGGCTTTGGATTCATCACTTATGATTCAGAAGAGGCAGTGGACAAGGTTTTGCTTAAGACATTTCATGAACTGAACGGGAAGATGGTTGAGGTCAAGCGTGCAGTTCCCAAAGAGTTATCGCCTGGCCCTAGTCGCAGCCCTATTGGTGGATACAACTACGGTCTGAGTAGGGTCAATAGCTTCCTTAATGGCTACACTCAGGGGTATACTCCAAATGCAGGTGGAGGCTATGGACTTGGTAGATTCAGTCCAGTTGCTGGTGGTCGTAGTGGATTTCCTCCATTTGGTTCTGGTTATGGAATGGGTATGAATTATGAGCCAGGGTTGAGCCCAGGTTTTGGAGGGAATGCAAATTATAATAATAATAATAATAATAATAATATGAACTATGGACGGGGTGGATTGAGTCCTTATTATATCAATAATTCAAATAGGTTTAGCAATCCCATTGGGTATGATGGCGGTAATGGAGGAAACACATCTTCATTTTTCAGCTCAGTGACTCGAAACTTGTGGGGGGATGGGGGTGGTGGTCTTAACTCCACAAATTCTAATGCTTACATCAGATCAGGAAGTGGGACCATTGGAGGAAGTACATTTGGAAATACTGGAGCTAATTGGCCTTCTTCAGTAATGCCGGCTCAAGGCGGAGGAAATAATGTTTCTAACAATAGCAGGAACCTTGGTTATGGAGTTGGGGATAACAGTTACGGTCTGGGAACTGGAGGGTATGGAAGAAACAGTGGTGCAAGTGTGGCCCCTACATCTTCATTTGCTGCATCAAATGGTGGTGGTTTCGATGGGTCCTTGGCTGACCTTTACAGTAGTAATTCAGTTTATGGAGACCCTACTTGGAGATCATCAAATTCCGAGCAAGATGGGTCTGTTCCTTTTGGTTATGGGCTTGGCGGCACAGCTTCTGATGTTTCAGCTATGAGTTCTCCTGGTTATGTTGGTGGTTATAGTGTTAATAAGAGACAGTCAAACACAGGAATCGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

418

Amino Acids

43.38

Weight (kDa)

9.11

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	42 - 112	1.4e-06	RNA recognition motif
RRM_1	PF00076	44 - 101	2.7e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07810 AT3G07810
fragaria_vesca	FvH4_6g41280 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320 FvH4_6g41320
malus_domestica	MD09G1120600.v1.1 MD09G1121100.v1.1 MD17G1111500.v1.1 MD17G1112100.v1.1
prunus_persica	Prupe.3G202600_v2.0.a1 Prupe.3G202600_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1 Prupe.3G202900_v2.0.a1
pyrus_communis	pycom09g04550 pycom17g10350 pycom17g10380
rosa_chinensis	RchiOBHm_Chr2g0156821 RchiOBHm_Chr2g0156871
rosa_laevigata	RLG00000020945 RLG00000020948
rosa_multiflora	Rmu_co8440963.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092640 Rroxscaffold_2G00092680
rosa_rugosa	Rorug02G0456400 Rorug02G0456500 Rorug02G0456800 Rorug02G0456800 Rorug02G0456800 Rorug02G0456900 Rorug02G0456900 Rorug02G0456900
rosa_samantha	Rh2AG522100 Rh2AG522400 Rh2BG535500 Rh2BG535700 Rh2CG507000 Rh2CG507300 Rh2DG544500 Rh2DG544700
rosa_wichuraiana	Rw2G043110 Rw2G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AarI	CACCTGC	1 cut(s)	458
Acc36I	ACCTGC	1 cut(s)	458
AccB7I	CCANNNNNTGG	2 cut(s)	506, 587
AccI	GTMKAC	1 cut(s)	455
AciI	CCGC	4 cut(s)	118, 711, 897, 1158
AcsI	RAATTY	3 cut(s)	129, 796, 1114
AcuI	CTGAAG	1 cut(s)	861
AfaI	GTAC	2 cut(s)	182, 844
AfiI	CCNNNNNNNGG	7 cut(s)	113, 395, 467, 506, 533, 587, 893
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	175, 678
AjnI	CCWGG	6 cut(s)	106, 112, 370, 568, 580, 1192
AluBI	AGCT	5 cut(s)	429, 744, 863, 1166, 1181
AluI	AGCT	5 cut(s)	429, 744, 863, 1166, 1181
Alw26I	GTCTC	3 cut(s)	235, 1086, 1219
AlwNI	CAGNNNCTG	2 cut(s)	506, 1169
AoxI	GGCC	5 cut(s)	36, 115, 373, 869, 1005
ApeKI	GCWGC	4 cut(s)	90, 384, 1025, 1247
ApoI	RAATTY	3 cut(s)	129, 796, 1114
AspS9I	GGNCC	5 cut(s)	110, 374, 828, 1006, 1053
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	3 cut(s)	110, 828, 1053
BanII	GRGCYC	1 cut(s)	581
BbvI	GCAGC	4 cut(s)	102, 396, 1012, 1234
BccI	CCATC	7 cut(s)	14, 22, 325, 701, 764, 1043, 1121
BciT130I	CCWGG	6 cut(s)	108, 114, 372, 570, 582, 1194
BciVI	GTATCC	1 cut(s)	392
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	3 cut(s)	235, 1086, 1219
BfaI	CTAG	2 cut(s)	378, 1252
BfrI	CTTAAG	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	458
BfuI	GTATCC	1 cut(s)	392
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	6 cut(s)	91, 118, 385, 1026, 1159, 1248
BlsI	GCNGC	6 cut(s)	92, 119, 386, 1027, 1160, 1249
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	6 cut(s)	108, 114, 372, 570, 582, 1194
Bme18I	GGWCC	3 cut(s)	110, 828, 1053
BmgT120I	GGNCC	5 cut(s)	110, 374, 828, 1006, 1053
BmiI	GGNNCC	4 cut(s)	829, 929, 1008, 1054
BmrFI	CCNGG	6 cut(s)	108, 114, 372, 570, 582, 1194
BmsI	GCATC	3 cut(s)	102, 158, 1037
BpmI	CTGGAG	3 cut(s)	90, 879, 993
BpuEI	CTTGAG	1 cut(s)	876
BsaI	GGTCTC	2 cut(s)	235, 1086
BsaJI	CCNNGG	6 cut(s)	53, 97, 569, 580, 931, 1056
Bsc4I	CCNNNNNNNGG	7 cut(s)	113, 395, 467, 506, 533, 587, 893
Bse118I	RCCGGY	1 cut(s)	886
Bse1I	ACTGG	3 cut(s)	500, 862, 976
BseBI	CCWGG	6 cut(s)	108, 114, 372, 570, 582, 1194
BseDI	CCNNGG	6 cut(s)	53, 97, 569, 580, 931, 1056
BseGI	GGATG	5 cut(s)	33, 64, 93, 149, 775
BseLI	CCNNNNNNNGG	7 cut(s)	113, 395, 467, 506, 533, 587, 893
BseMII	CTCAG	3 cut(s)	404, 461, 759
BseNI	ACTGG	3 cut(s)	500, 862, 976
BseXI	GCAGC	4 cut(s)	102, 396, 1012, 1234
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	5 cut(s)	38, 117, 375, 871, 1007
BsiSI	CCGG	1 cut(s)	887
BslFI	GGGAC	2 cut(s)	211, 841
BslI	CCNNNNNNNGG	7 cut(s)	113, 395, 467, 506, 533, 587, 893
BsmAI	GTCTC	3 cut(s)	235, 1086, 1219
BsmFI	GGGAC	2 cut(s)	211, 841
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	5 cut(s)	38, 117, 375, 871, 1007
Bso31I	GGTCTC	2 cut(s)	235, 1086
Bsp1286I	GDGCHC	1 cut(s)	581
Bsp143I	GATC	3 cut(s)	226, 815, 1106
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	4 cut(s)	118, 711, 897, 1158
BspANI	GGCC	5 cut(s)	38, 117, 375, 871, 1007
BspCNI	CTCAG	3 cut(s)	405, 460, 758
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	4 cut(s)	829, 929, 1008, 1054
BspMI	ACCTGC	1 cut(s)	458
BspTI	CTTAAG	1 cut(s)	302
BspTNI	GGTCTC	2 cut(s)	235, 1086
BsrFI	RCCGGY	1 cut(s)	886
BsrI	ACTGG	3 cut(s)	500, 862, 976
BssAI	RCCGGY	1 cut(s)	886
BssECI	CCNNGG	6 cut(s)	53, 97, 569, 580, 931, 1056
BssMI	GATC	3 cut(s)	226, 815, 1106
BssNAI	GTATAC	1 cut(s)	456
BssT1I	CCWWGG	4 cut(s)	53, 97, 931, 1056
Bst1107I	GTATAC	1 cut(s)	456
Bst2UI	CCWGG	6 cut(s)	108, 114, 372, 570, 582, 1194
Bst4CI	ACNGT	7 cut(s)	157, 410, 956, 962, 992, 1073, 1230
Bst6I	CTCTTC	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	348, 888
BstDEI	CTNAG	3 cut(s)	413, 447, 745
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	5 cut(s)	33, 64, 93, 149, 775
BstKTI	GATC	3 cut(s)	229, 818, 1109
BstMAI	GTCTC	3 cut(s)	235, 1086, 1219
BstMBI	GATC	3 cut(s)	226, 815, 1106
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 90, 381, 1004
BstNI	CCWGG	6 cut(s)	108, 114, 372, 570, 582, 1194
BstSCI	CCNGG	6 cut(s)	106, 112, 370, 568, 580, 1192
BstV1I	GCAGC	4 cut(s)	102, 396, 1012, 1234
BstZ17I	GTATAC	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	5 cut(s)	38, 117, 375, 871, 1007
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	5 cut(s)	33, 64, 93, 149, 775
BtsI	GCAGTG	2 cut(s)	91, 291
BtsIMutI	CAGTG	5 cut(s)	91, 153, 291, 753, 997
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	2 cut(s)	348, 888
CaiI	CAGNNNCTG	2 cut(s)	506, 1169
CciI	TCATGA	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	886
Cfr13I	GGNCC	5 cut(s)	110, 374, 828, 1006, 1053
Csp6I	GTAC	2 cut(s)	181, 843
CviAII	CATG	2 cut(s)	98, 314
CviQI	GTAC	2 cut(s)	181, 843
DdeI	CTNAG	3 cut(s)	413, 447, 745
DpnI	GATC	3 cut(s)	228, 817, 1108
DpnII	GATC	3 cut(s)	226, 815, 1106
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	912
Eco130I	CCWWGG	4 cut(s)	53, 97, 931, 1056
Eco24I	GRGCYC	1 cut(s)	581
Eco31I	GGTCTC	2 cut(s)	235, 1086
Eco47I	GGWCC	3 cut(s)	110, 828, 1053
Eco57I	CTGAAG	1 cut(s)	861
EcoO109I	RGGNCCY	1 cut(s)	1053
EcoRII	CCWGG	6 cut(s)	106, 112, 370, 568, 580, 1192
EcoT14I	CCWWGG	4 cut(s)	53, 97, 931, 1056
EcoT38I	GRGCYC	1 cut(s)	581
ErhI	CCWWGG	4 cut(s)	53, 97, 931, 1056
FaeI	CATG	2 cut(s)	101, 317
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	211, 841
FatI	CATG	2 cut(s)	97, 313
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	6 cut(s)	91, 118, 385, 1026, 1159, 1248
FokI	GGATG	5 cut(s)	40, 71, 80, 136, 782
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	6 cut(s)	91, 118, 385, 1026, 1159, 1248
FspBI	CTAG	2 cut(s)	378, 1252
GluI	GCNGC	6 cut(s)	91, 118, 385, 1026, 1159, 1248
GsuI	CTGGAG	3 cut(s)	90, 879, 993
HaeIII	GGCC	5 cut(s)	38, 117, 375, 871, 1007
HapII	CCGG	1 cut(s)	887
Hin1II	CATG	2 cut(s)	101, 317
HinfI	GANTC	6 cut(s)	258, 272, 492, 655, 751, 1242
HpaII	CCGG	1 cut(s)	887
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	289, 456
Hpy188I	TCNGA	5 cut(s)	277, 414, 815, 1120, 1171
Hpy188III	TCNNGA	3 cut(s)	175, 314, 819
Hpy8I	GTNNAC	2 cut(s)	289, 456
HpyAV	CCTTC	2 cut(s)	18, 882
HpyCH4III	ACNGT	7 cut(s)	157, 410, 956, 962, 992, 1073, 1230
HpyCH4V	TGCA	5 cut(s)	350, 467, 599, 998, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 90, 381, 1004
HpyF3I	CTNAG	3 cut(s)	413, 447, 745
Hsp92II	CATG	2 cut(s)	101, 317
KroI	GCCGGC	1 cut(s)	886
KroNI	GCCGGC	1 cut(s)	888
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	226, 815, 1106
LmnI	GCTCC	1 cut(s)	860
Lsp1109I	GCAGC	4 cut(s)	102, 396, 1012, 1234
LweI	GCATC	3 cut(s)	102, 158, 1037
MaeI	CTAG	2 cut(s)	378, 1252
MaeIII	GTNAC	4 cut(s)	157, 167, 748, 956
MalI	GATC	3 cut(s)	228, 817, 1108
MboI	GATC	3 cut(s)	226, 815, 1106
MboII	GAAGA	7 cut(s)	90, 290, 340, 723, 867, 996, 1008
MhlI	GDGCHC	1 cut(s)	581
MluCI	AATT	8 cut(s)	129, 559, 601, 673, 796, 865, 1078, 1114
MlyI	GAGTC	2 cut(s)	664, 745
MmeI	TCCRAC	1 cut(s)	118
MroNI	GCCGGC	1 cut(s)	886
MseI	TTAA	4 cut(s)	303, 435, 786, 1218
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	1 cut(s)	887
MspR9I	CCNGG	6 cut(s)	108, 114, 372, 570, 582, 1194
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	6 cut(s)	108, 114, 372, 570, 582, 1194
MwoI	GCNNNNNNNGC	4 cut(s)	44, 90, 381, 1004
NaeI	GCCGGC	1 cut(s)	888
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	3 cut(s)	226, 815, 1106
NgoMIV	GCCGGC	1 cut(s)	886
NlaIII	CATG	2 cut(s)	101, 317
NlaIV	GGNNCC	4 cut(s)	829, 929, 1008, 1054
NmuCI	GTSAC	3 cut(s)	157, 167, 748
PagI	TCATGA	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	458
PctI	GAATGC	1 cut(s)	601
PdiI	GCCGGC	1 cut(s)	888
PfeI	GAWTC	4 cut(s)	258, 272, 492, 1242
PflMI	CCANNNNNTGG	2 cut(s)	506, 587
PkrI	GCNGC	6 cut(s)	92, 119, 386, 1027, 1160, 1249
PleI	GAGTC	2 cut(s)	663, 745
PpsI	GAGTC	2 cut(s)	663, 745
PpuMI	RGGWCCY	1 cut(s)	1053
PsiI	TTATAA	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	1053
Psp6I	CCWGG	6 cut(s)	106, 112, 370, 568, 580, 1192
PspGI	CCWGG	6 cut(s)	106, 112, 370, 568, 580, 1192
PspN4I	GGNNCC	4 cut(s)	829, 929, 1008, 1054
PspPI	GGNCC	5 cut(s)	110, 374, 828, 1006, 1053
PspPPI	RGGWCCY	1 cut(s)	1053
PstNI	CAGNNNCTG	2 cut(s)	506, 1169
RsaI	GTAC	2 cut(s)	182, 844
RsaNI	GTAC	2 cut(s)	181, 843
SaqAI	TTAA	4 cut(s)	303, 435, 786, 1218
SatI	GCNGC	6 cut(s)	91, 118, 385, 1026, 1159, 1248
Sau3AI	GATC	3 cut(s)	226, 815, 1106
Sau96I	GGNCC	5 cut(s)	110, 374, 828, 1006, 1053
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	2 cut(s)	664, 745
ScrFI	CCNGG	6 cut(s)	108, 114, 372, 570, 582, 1194
SduI	GDGCHC	1 cut(s)	581
SfaNI	GCATC	3 cut(s)	102, 158, 1037
SinI	GGWCC	3 cut(s)	110, 828, 1053
SmlI	CTYRAG	2 cut(s)	302, 891
SmoI	CTYRAG	2 cut(s)	302, 891
Sse9I	AATT	8 cut(s)	129, 559, 601, 673, 796, 865, 1078, 1114
SsiI	CCGC	4 cut(s)	118, 711, 897, 1158
SspMI	CTAG	2 cut(s)	378, 1252
StyD4I	CCNGG	6 cut(s)	106, 112, 370, 568, 580, 1192
StyI	CCWWGG	4 cut(s)	53, 97, 931, 1056
TaaI	ACNGT	7 cut(s)	157, 410, 956, 962, 992, 1073, 1230
TaqI	TCGA	2 cut(s)	754, 1047
TaqII	GACCGA	1 cut(s)	259
TasI	AATT	8 cut(s)	129, 559, 601, 673, 796, 865, 1078, 1114
TatI	WGTACW	2 cut(s)	180, 842
TauI	GCSGC	2 cut(s)	120, 1161
TfiI	GAWTC	4 cut(s)	258, 272, 492, 1242
Tru1I	TTAA	4 cut(s)	303, 435, 786, 1218
Tru9I	TTAA	4 cut(s)	303, 435, 786, 1218
TscAI	CASTG	5 cut(s)	91, 160, 291, 753, 997
TseFI	GTSAC	3 cut(s)	157, 167, 748
TseI	GCWGC	4 cut(s)	90, 384, 1025, 1247
Tsp45I	GTSAC	3 cut(s)	157, 167, 748
TspDTI	ATGAA	7 cut(s)	250, 302, 330, 572, 647, 723, 1008
TspRI	CASTG	5 cut(s)	91, 160, 291, 753, 997
Van91I	CCANNNNNTGG	2 cut(s)	506, 587
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	3 cut(s)	110, 828, 1053
XapI	RAATTY	3 cut(s)	129, 796, 1114
XmiI	GTMKAC	1 cut(s)	455
XspI	CTAG	2 cut(s)	378, 1252
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.