Rorug02G0456400

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002028
Physical Location & Seq
Forward (+)
58629205 .. 58629738
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0456400.1

Sequence Viewer

Length: 498 bp
ATGGGGGAGAGCCACAACAACCTCCACCATCGCGCAACGACGTCGTCCTCCGCTGCTTCTCGATTGGGTTTAGGGATAAGGACTGCTTCTTCCTCCACCGTCAGCGAAATCGTGGAGGCTCGAGGCCACATTTTAAGGGCCATCGGCCGGAAGGACCGCCACAGCAAGGTCTGCACCGCCAAAGGCCCCAGGGACCGCCGCTTTCGGCTCGCCGCCCACACCGCCATTCAATTCTACAACGCCGTCGATTGGCTCATCAAGAAAGCCAAGGCCGCAATCGACAAGCTCGACGAGCTGCCGCCGTGGAACCCGAACTCAATTTATGTTCAGACAACATCTTCTCCGACGGTGCCGATATCCGCCGCGCAGGACACGCAGAACGCGAGCCTCCATTTCTCGTTGGTGGAGGCTCCGAGTTCTTTGTCTGCTAATCGGCGAGGCGCAATGGTGGGTAGCAGCGGAGTGGCGGAGCTGGTGCACAATTTCAATTTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

165

Amino Acids

17.82

Weight (kDa)

10.26

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 49 - 114 5.2e-15 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 349
AccII CGCG 3 cut(s) 33, 365, 383
AcoI YGGCCR 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 41
AfiI CCNNNNNNNGG 3 cut(s) 147, 166, 249
AgsI TTSAA 2 cut(s) 230, 487
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 3 cut(s) 286, 295, 472
AluI AGCT 3 cut(s) 286, 295, 472
Alw21I GWGCWC 1 cut(s) 480
Alw44I GTGCAC 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 5 cut(s) 124, 138, 145, 184, 270
ApaLI GTGCAC 1 cut(s) 476
ApeKI GCWGC 3 cut(s) 53, 295, 456
AspLEI GCGC 3 cut(s) 35, 367, 443
AspS9I GGNCC 4 cut(s) 138, 154, 185, 193
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 2 cut(s) 154, 193
BaeGI GKGCMC 1 cut(s) 480
BanI GGYRCC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 3 cut(s) 40, 282, 468
BccI CCATC 2 cut(s) 36, 149
BceAI ACGGC 2 cut(s) 227, 286
BcgI CGANNNNNNTGC 2 cut(s) 24, 58
BciT130I CCWGG 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 494
BisI GCNGC 8 cut(s) 54, 199, 213, 273, 296, 299, 363, 457
BlsI GCNGC 8 cut(s) 55, 200, 214, 274, 297, 300, 364, 458
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 2 cut(s) 154, 193
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 4 cut(s) 138, 154, 185, 193
BmiI GGNNCC 5 cut(s) 187, 194, 308, 351, 411
BmrFI CCNGG 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 4 cut(s) 188, 189, 267, 302
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 166, 249
Bse3DI GCAATG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 4 cut(s) 188, 189, 267, 302
BseLI CCNNNNNNNGG 3 cut(s) 147, 166, 249
BseMI GCAATG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 480
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 3 cut(s) 40, 282, 468
BsgI GTGCAG 1 cut(s) 157
Bsh1236I CGCG 3 cut(s) 33, 365, 383
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 5 cut(s) 126, 140, 147, 186, 272
BshNI GGYRCC 1 cut(s) 349
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 480
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 3 cut(s) 147, 166, 249
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 5 cut(s) 126, 140, 147, 186, 272
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 480
BspANI GGCC 5 cut(s) 126, 140, 147, 186, 272
BspFNI CGCG 3 cut(s) 33, 365, 383
BspLI GGNNCC 5 cut(s) 187, 194, 308, 351, 411
BspT107I GGYRCC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 450
BssECI CCNNGG 4 cut(s) 188, 189, 267, 302
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 100, 349
BstACI GRCGYC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 210, 385
BstDSI CCRYGG 1 cut(s) 302
BstFNI CGCG 3 cut(s) 33, 365, 383
BstHHI GCGC 3 cut(s) 35, 367, 443
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 5 cut(s) 171, 221, 272, 292, 373
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 494
BstSLI GKGCMC 1 cut(s) 480
BstUI CGCG 3 cut(s) 33, 365, 383
BstV1I GCAGC 3 cut(s) 40, 282, 468
BstZI CGGCCG 1 cut(s) 145
BsuRI GGCC 5 cut(s) 126, 140, 147, 186, 272
BtgI CCRYGG 1 cut(s) 302
BtgZI GCGATG 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 210, 385
CfoI GCGC 3 cut(s) 35, 367, 443
Cfr13I GGNCC 4 cut(s) 138, 154, 185, 193
EaeI YGGCCR 1 cut(s) 145
EagI CGGCCG 1 cut(s) 145
EciI GGCGGA 2 cut(s) 349, 482
EclXI CGGCCG 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 267
Eco32I GATATC 1 cut(s) 357
Eco47I GGWCC 2 cut(s) 154, 193
Eco52I CGGCCG 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 188
EcoRV GATATC 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaiI YATR 1 cut(s) 324
FalI AAGNNNNNCTT 2 cut(s) 70, 102
FaqI GGGAC 1 cut(s) 206
Fnu4HI GCNGC 8 cut(s) 54, 199, 213, 273, 296, 299, 363, 457
Fsp4HI GCNGC 8 cut(s) 54, 199, 213, 273, 296, 299, 363, 457
GlaI GCGC 3 cut(s) 34, 366, 442
GluI GCNGC 8 cut(s) 54, 199, 213, 273, 296, 299, 363, 457
HaeIII GGCC 5 cut(s) 126, 140, 147, 186, 272
HapII CCGG 1 cut(s) 148
HhaI GCGC 3 cut(s) 35, 367, 443
Hin1I GRCGYC 1 cut(s) 41
Hin6I GCGC 3 cut(s) 33, 365, 441
HinP1I GCGC 3 cut(s) 33, 365, 441
HpaII CCGG 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 3 cut(s) 330, 345, 414
Hpy188III TCNNGA 2 cut(s) 60, 259
Hpy8I GTNNAC 1 cut(s) 478
Hpy99I CGWCG 5 cut(s) 43, 46, 248, 293, 349
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 100, 349
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 174, 478
HpyF10VI GCNNNNNNNGC 5 cut(s) 171, 221, 272, 292, 373
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 41
HspAI GCGC 3 cut(s) 33, 365, 441
LmnI GCTCC 2 cut(s) 415, 469
LpnPI CCDG 5 cut(s) 161, 175, 202, 353, 458
Lsp1109I GCAGC 3 cut(s) 40, 282, 468
MaeII ACGT 1 cut(s) 41
MboII GAAGA 2 cut(s) 81, 330
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 4 cut(s) 230, 318, 481, 487
MmeI TCCRAC 1 cut(s) 368
MnlI CCTC 8 cut(s) 32, 58, 103, 109, 116, 398, 400, 431
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 2 cut(s) 53, 459
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
MvnI CGCG 3 cut(s) 33, 365, 383
MwoI GCNNNNNNNGC 5 cut(s) 171, 221, 272, 292, 373
NlaIV GGNNCC 5 cut(s) 187, 194, 308, 351, 411
PaeR7I CTCGAG 1 cut(s) 120
PasI CCCWGGG 1 cut(s) 189
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 380
PflFI GACNNNGTC 1 cut(s) 43
PkrI GCNGC 8 cut(s) 55, 200, 214, 274, 297, 300, 364, 458
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 5 cut(s) 187, 194, 308, 351, 411
PspPI GGNCC 4 cut(s) 138, 154, 185, 193
PspXI VCTCGAGB 1 cut(s) 120
PsyI GACNNNGTC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 8 cut(s) 54, 199, 213, 273, 296, 299, 363, 457
Sau96I GGNCC 4 cut(s) 138, 154, 185, 193
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 1 cut(s) 480
SetI ASST 6 cut(s) 24, 44, 171, 288, 297, 474
SfcI CTRYAG 1 cut(s) 494
Sfr274I CTCGAG 1 cut(s) 120
SinI GGWCC 2 cut(s) 154, 193
SlaI CTCGAG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 4 cut(s) 230, 318, 481, 487
StyD4I CCNGG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 100, 349
TaiI ACGT 1 cut(s) 44
TaqI TCGA 5 cut(s) 61, 121, 246, 279, 288
TasI AATT 4 cut(s) 230, 318, 481, 487
TauI GCSGC 5 cut(s) 201, 215, 275, 301, 365
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseI GCWGC 3 cut(s) 53, 295, 456
Tth111I GACNNNGTC 1 cut(s) 43
VneI GTGCAC 1 cut(s) 476
VpaK11BI GGWCC 2 cut(s) 154, 193
XhoI CTCGAG 1 cut(s) 120
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.