Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Reverse (-)

3507996 .. 3510658

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCCGCCGCAGCCGTTTCCTCTAACCCTCGCACCGTTGAAGAGATCTTCAAAGATTATTCCGCTCGTCGTGCCGCTCTTCTTCGTGCTCTCACTAAAGATGTTGATGATTTTTACTCTCAATGCGATCCGGAAAAGGAGAATTTGTGTTTGTACGGACACCCTAATGAGTCATGGGAAGTGAATCTACCAGCAGAGGAAGTGCCTCCGGAGCTACCTGAGCCTGCTCTTGGTATCAATTTCGCTAGAGATGGTATGCAGAGGAAAGATTGGCTTTCTCTTGTTGCTGTTCACAGTGATTGTTGGTTGCTCTCTGTTTCTTTCTACTTTGGAGCCCGTCTTAATCGCAATGAGAGGAAGCGGTTATTCAGTCTGATCAACGATCTCCCAACTCTCTTCGATGTAGTGACTGGTAGGAAAGCCATGAAAGACAACAAGCCAAGCTCGGACTCAGGAAGCAAATCCAGAAATGGCACTAAGAGATCAATAGACGGGCAGACAAAGAGCTCAACACCGAAACTAATGGAAGAGAGCTATGAGGAGGAGGAAGAAGAAGACGAGCATGGAGACACTCTCTGTGGAAGCTGTGGAGGTCATTACACAAATGAGGAGTTCTGGATTTGCTGTGATGTTTGTGAACGTTGGTACCATGGAAAATGCGTCAAGATAACTCCGGCTAAAGCAGAGAGCATCAAGCAGTATAAATGCCCGCCTTGCTGTGCAAAGAAAGGAAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

246

Amino Acids

27.83

Weight (kDa)

5.53

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	12 - 137	1.1e-69	Alfin
PHD	PF00628	193 - 239	1.1e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	645
AccB1I	GGYRCC	1 cut(s)	645
AccBSI	CCGCTC	2 cut(s)	65, 77
AccIII	TCCGGA	2 cut(s)	130, 208
AciI	CCGC	6 cut(s)	6, 9, 63, 75, 361, 710
AclI	AACGTT	1 cut(s)	640
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	2 cut(s)	155, 647
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	41, 52
AluBI	AGCT	5 cut(s)	214, 444, 507, 534, 585
AluI	AGCT	5 cut(s)	214, 444, 507, 534, 585
Alw21I	GWGCWC	2 cut(s)	91, 509
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	1 cut(s)	122
Aor13HI	TCCGGA	2 cut(s)	130, 208
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	142
Asp718I	GGTACC	1 cut(s)	645
BaeI	ACNNNNGTAYC	2 cut(s)	629, 662
BanI	GGYRCC	1 cut(s)	645
BanII	GRGCYC	2 cut(s)	337, 509
BarI	GAAGNNNNNNTAC	2 cut(s)	171, 203
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	2 cut(s)	91, 509
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	1 cut(s)	246
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	4 cut(s)	6, 9, 12, 75
BlsI	GCNGC	4 cut(s)	7, 10, 13, 76
BmiI	GGNNCC	2 cut(s)	334, 647
BmsI	GCATC	1 cut(s)	699
BpiI	GAAGAC	1 cut(s)	561
BplI	GAGNNNNNCTC	2 cut(s)	558, 590
Bpu10I	CCTNAGC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	649
BsaWI	WCCGGW	2 cut(s)	130, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	355
BseAI	TCCGGA	2 cut(s)	130, 208
BseDI	CCNNGG	1 cut(s)	649
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	2 cut(s)	210, 465
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	3 cut(s)	554, 557, 623
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	645
BsiHKAI	GWGCWC	2 cut(s)	91, 509
BsiSI	CCGG	3 cut(s)	131, 209, 674
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	561
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	3 cut(s)	91, 337, 509
Bsp13I	TCCGGA	2 cut(s)	130, 208
Bsp143I	GATC	5 cut(s)	45, 127, 375, 382, 482
Bsp19I	CCATGG	1 cut(s)	649
BspACI	CCGC	6 cut(s)	6, 9, 63, 75, 361, 710
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	211, 464
BspEI	TCCGGA	2 cut(s)	130, 208
BspLI	GGNNCC	2 cut(s)	334, 647
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	645
BsrBI	CCGCTC	2 cut(s)	65, 77
BsrDI	GCAATG	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	5 cut(s)	45, 127, 375, 382, 482
BssT1I	CCWWGG	1 cut(s)	649
Bst4CI	ACNGT	3 cut(s)	37, 296, 738
Bst6I	CTCTTC	4 cut(s)	36, 84, 401, 522
BstC8I	GCNNGC	2 cut(s)	225, 710
BstDEI	CTNAG	3 cut(s)	219, 451, 477
BstDSI	CCRYGG	1 cut(s)	649
BstKTI	GATC	5 cut(s)	48, 130, 378, 385, 485
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	5 cut(s)	45, 127, 375, 382, 482
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 71, 211, 220, 714
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	225, 710
CseI	GACGC	1 cut(s)	649
Csp6I	GTAC	2 cut(s)	154, 646
CviAII	CATG	4 cut(s)	174, 424, 563, 650
CviQI	GTAC	2 cut(s)	154, 646
DdeI	CTNAG	3 cut(s)	219, 451, 477
DpnI	GATC	5 cut(s)	47, 129, 377, 384, 484
DpnII	GATC	5 cut(s)	45, 127, 375, 382, 482
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	36, 84, 401, 522
EarI	CTCTTC	4 cut(s)	36, 84, 401, 522
Ecl136II	GAGCTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	649
Eco24I	GRGCYC	2 cut(s)	337, 509
Eco53kI	GAGCTC	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	649
EcoT38I	GRGCYC	2 cut(s)	337, 509
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	4 cut(s)	177, 427, 566, 653
FaiI	YATR	7 cut(s)	175, 257, 425, 537, 564, 651, 702
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	4 cut(s)	173, 423, 562, 649
FauI	CCCGC	1 cut(s)	717
FbaI	TGATCA	1 cut(s)	375
Fnu4HI	GCNGC	4 cut(s)	6, 9, 12, 75
FriOI	GRGCYC	2 cut(s)	337, 509
Fsp4HI	GCNGC	4 cut(s)	6, 9, 12, 75
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	4 cut(s)	6, 9, 12, 75
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	131, 209, 674
HgaI	GACGC	1 cut(s)	649
Hin1II	CATG	4 cut(s)	177, 427, 566, 653
HinfI	GANTC	3 cut(s)	170, 184, 449
HpaII	CCGG	3 cut(s)	131, 209, 674
Hpy166II	GTNNAC	2 cut(s)	292, 638
Hpy188I	TCNGA	2 cut(s)	375, 448
Hpy188III	TCNNGA	6 cut(s)	131, 209, 453, 465, 616, 664
Hpy8I	GTNNAC	2 cut(s)	292, 638
Hpy99I	CGWCG	1 cut(s)	72
HpyCH4III	ACNGT	3 cut(s)	37, 296, 738
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	2 cut(s)	259, 722
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 71, 211, 220, 714
HpyF3I	CTNAG	3 cut(s)	219, 451, 477
HpySE526I	ACGT	1 cut(s)	640
Hsp92II	CATG	4 cut(s)	177, 427, 566, 653
Kpn2I	TCCGGA	2 cut(s)	130, 208
KpnI	GGTACC	1 cut(s)	649
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	5 cut(s)	45, 127, 375, 382, 482
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	211, 332
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	699
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	5 cut(s)	47, 129, 377, 384, 484
MbiI	CCGCTC	2 cut(s)	65, 77
MboI	GATC	5 cut(s)	45, 127, 375, 382, 482
MboII	GAAGA	9 cut(s)	40, 53, 71, 74, 388, 539, 560, 563, 566
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	3 cut(s)	91, 337, 509
MluCI	AATT	2 cut(s)	142, 238
MlyI	GAGTC	2 cut(s)	179, 443
MroI	TCCGGA	2 cut(s)	130, 208
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	3 cut(s)	131, 209, 674
MwoI	GCNNNNNNNGC	5 cut(s)	11, 71, 211, 220, 714
NcoI	CCATGG	1 cut(s)	649
NdeII	GATC	5 cut(s)	45, 127, 375, 382, 482
NlaIII	CATG	4 cut(s)	177, 427, 566, 653
NlaIV	GGNNCC	2 cut(s)	334, 647
NmuCI	GTSAC	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	4 cut(s)	7, 10, 13, 76
PleI	GAGTC	2 cut(s)	178, 443
PpsI	GAGTC	2 cut(s)	178, 443
Psp124BI	GAGCTC	1 cut(s)	509
Psp1406I	AACGTT	1 cut(s)	640
PspN4I	GGNNCC	2 cut(s)	334, 647
PsuI	RGATCY	1 cut(s)	45
RsaI	GTAC	2 cut(s)	155, 647
RsaNI	GTAC	2 cut(s)	154, 646
RseI	CAYNNNNRTG	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	4 cut(s)	6, 9, 12, 75
Sau3AI	GATC	5 cut(s)	45, 127, 375, 382, 482
SchI	GAGTC	2 cut(s)	179, 443
SduI	GDGCHC	3 cut(s)	91, 337, 509
SetI	ASST	8 cut(s)	216, 220, 446, 509, 536, 587, 595, 643
SfaNI	GCATC	1 cut(s)	699
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	142, 238
SsiI	CCGC	6 cut(s)	6, 9, 63, 75, 361, 710
SspMI	CTAG	1 cut(s)	246
SstI	GAGCTC	1 cut(s)	509
StyI	CCWWGG	1 cut(s)	649
TaaI	ACNGT	3 cut(s)	37, 296, 738
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	1 cut(s)	399
TasI	AATT	2 cut(s)	142, 238
TauI	GCSGC	3 cut(s)	8, 11, 77
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	440
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	142
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.