Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Forward (+)

26183565 .. 26186617

Gene Structure 3053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1153500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCCATCGTCCAGCCCTCGCACCGTCGAAGAGATCTTCAAGGACTACAGCGCCCGTCGCTCCGCCGTCATTCGCGCCCTCACCTACGATGTGGACGAGTTCTACTCCCTTTGCGATCCAGAGAAGGAGAATTTGTGCTTGTATGGACACCCAGATGAGTCGTGGGAGGTGACCCTGCCGGCAGAGGAAGTTCCCCCGGAGCTTCCCGAGCCTGCACTGGGCATCAATTTTGCAAGAGATGGGATGAACCGTAAAGATTGGCTGTCATTGATTGCAGTACATAGCGATTCTTGGTTGCTCTCTGTGGCTTTCTACTTTGGTGCTCGACTTAATCGGAATGAGAGGAAGCGTCTGTTTAGCTTGACAAATGATCTGCCTACAATCTTTGAAGTCGTAACTGGAAGGAAGCCCGTAAAAGACAAGCCCAGTGGGGATAGCGGAAGTAAATCCAGGAACTCAAAGAGATCGATTGACGGACAAGTAAGGACCAACAGTAAGGTACATGATGTAAGCTATTTGGAGGATGAAGATGAGCATAGTGAAACCCTATGTGGAAGCTGTGGGGGAAATTACAGTGCCAATGAGTTTTGGATCGGCTGCGACATCTGCGAGAGGTGGTACCATGGGAAGTGTGTCAAGGTAACACCAGCCAAGGCAGAATACATTCAGCAGTACAAATGTCCTTCTTGCAGCACAAAGAAGAGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

237

Amino Acids

26.76

Weight (kDa)

5.82

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	8 - 133	8e-69	Alfin
PHD	PF00628	184 - 230	2.2e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	618
AccB1I	GGYRCC	1 cut(s)	618
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	63, 438
AclWI	GGATC	2 cut(s)	110, 599
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	4 cut(s)	279, 501, 620, 674
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	40, 389
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	4 cut(s)	202, 360, 513, 558
AluI	AGCT	4 cut(s)	202, 360, 513, 558
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	110, 599
Ama87I	CYCGRG	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	597, 690
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	663
Asp718I	GGTACC	1 cut(s)	618
AspLEI	GCGC	2 cut(s)	53, 77
AspS9I	GGNCC	1 cut(s)	486
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	73, 181
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	486
BanI	GGYRCC	1 cut(s)	618
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	584, 702
BccI	CCATC	2 cut(s)	13, 233
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	54
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	2 cut(s)	598, 691
BlsI	GCNGC	2 cut(s)	599, 692
Bme1390I	CCNGG	2 cut(s)	197, 451
Bme18I	GGWCC	1 cut(s)	486
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	486
BmiI	GGNNCC	1 cut(s)	620
BmrFI	CCNGG	2 cut(s)	197, 451
BmrI	ACTGGG	2 cut(s)	227, 420
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	2 cut(s)	227, 420
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpuMI	CCSGG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	467
BsaJI	CCNNGG	3 cut(s)	195, 622, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	3 cut(s)	222, 403, 426
BseBI	CCWGG	1 cut(s)	451
BseCI	ATCGAT	1 cut(s)	467
BseDI	CCNNGG	3 cut(s)	195, 622, 651
BseGI	GGATG	2 cut(s)	249, 529
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseNI	ACTGG	3 cut(s)	222, 403, 426
BseXI	GCAGC	2 cut(s)	584, 702
BsgI	GTGCAG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	618
BshVI	ATCGAT	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	179, 197
BslI	CCNNNNNNNGG	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	5 cut(s)	33, 115, 370, 464, 591
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	2 cut(s)	63, 438
BspDI	ATCGAT	1 cut(s)	467
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	620
BspPI	GGATC	2 cut(s)	110, 599
BspQI	GCTCTTC	1 cut(s)	695
BspT107I	GGYRCC	1 cut(s)	618
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	3 cut(s)	222, 403, 426
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	3 cut(s)	195, 622, 651
BssMI	GATC	5 cut(s)	33, 115, 370, 464, 591
BssT1I	CCWWGG	2 cut(s)	622, 651
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	4 cut(s)	25, 251, 494, 575
Bst6I	CTCTTC	2 cut(s)	24, 695
BstC8I	GCNNGC	2 cut(s)	180, 213
BstDSI	CCRYGG	1 cut(s)	622
BstEII	GGTNACC	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	249, 529
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 77
BstKTI	GATC	5 cut(s)	36, 118, 373, 467, 594
BstMBI	GATC	5 cut(s)	33, 115, 370, 464, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 208, 606
BstNI	CCWGG	1 cut(s)	451
BstPI	GGTNACC	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	195, 449
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	584, 702
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	467
BsuTUI	ATCGAT	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	2 cut(s)	249, 529
BtsIMutI	CAGTG	3 cut(s)	215, 433, 580
Cac8I	GCNNGC	2 cut(s)	180, 213
CfoI	GCGC	2 cut(s)	53, 77
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	486
ClaI	ATCGAT	1 cut(s)	467
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	4 cut(s)	278, 500, 619, 673
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	2 cut(s)	503, 623
CviQI	GTAC	4 cut(s)	278, 500, 619, 673
DpnI	GATC	5 cut(s)	35, 117, 372, 466, 593
DpnII	GATC	5 cut(s)	33, 115, 370, 464, 591
Eam1104I	CTCTTC	2 cut(s)	24, 695
EarI	CTCTTC	2 cut(s)	24, 695
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	622, 651
Eco47I	GGWCC	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	206
Eco91I	GGTNACC	1 cut(s)	169
EcoO65I	GGTNACC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	622, 651
ErhI	CCWWGG	2 cut(s)	622, 651
FaeI	CATG	2 cut(s)	506, 626
FaiI	YATR	6 cut(s)	144, 282, 504, 537, 550, 624
FatI	CATG	2 cut(s)	502, 622
Fnu4HI	GCNGC	2 cut(s)	598, 691
FokI	GGATG	2 cut(s)	256, 536
Fsp4HI	GCNGC	2 cut(s)	598, 691
GlaI	GCGC	2 cut(s)	52, 76
GluI	GCNGC	2 cut(s)	598, 691
HaeII	RGCGCY	1 cut(s)	54
HapII	CCGG	2 cut(s)	179, 197
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	2 cut(s)	53, 77
Hin1II	CATG	2 cut(s)	506, 626
Hin6I	GCGC	2 cut(s)	51, 75
HinP1I	GCGC	2 cut(s)	51, 75
HinfI	GANTC	2 cut(s)	158, 287
HpaII	CCGG	2 cut(s)	179, 197
HphI	GGTGA	2 cut(s)	73, 181
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	2 cut(s)	119, 206
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	29, 60
HpyAV	CCTTC	3 cut(s)	118, 396, 693
HpyCH4III	ACNGT	4 cut(s)	25, 251, 494, 575
HpyCH4V	TGCA	4 cut(s)	215, 233, 275, 690
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 208, 606
Hsp92II	CATG	2 cut(s)	506, 626
HspAI	GCGC	2 cut(s)	51, 75
KpnI	GGTACC	1 cut(s)	622
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	5 cut(s)	33, 115, 370, 464, 591
LguI	GCTCTTC	1 cut(s)	695
LmnI	GCTCC	2 cut(s)	65, 199
Lsp1109I	GCAGC	2 cut(s)	584, 702
LweI	GCATC	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	169, 394, 640
MalI	GATC	5 cut(s)	35, 117, 372, 466, 593
MboI	GATC	5 cut(s)	33, 115, 370, 464, 591
MboII	GAAGA	3 cut(s)	28, 41, 539
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	3 cut(s)	130, 226, 568
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	7 cut(s)	27, 89, 160, 178, 336, 514, 606
MroNI	GCCGGC	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	2 cut(s)	179, 197
MspR9I	CCNGG	2 cut(s)	197, 451
MvaI	CCWGG	1 cut(s)	451
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	57, 208, 606
NaeI	GCCGGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	5 cut(s)	33, 115, 370, 464, 591
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	506, 626
NlaIV	GGNNCC	1 cut(s)	620
NmuCI	GTSAC	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	599, 692
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	449
PspEI	GGTNACC	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	620
PspPI	GGNCC	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	4 cut(s)	279, 501, 620, 674
RsaNI	GTAC	4 cut(s)	278, 500, 619, 673
RseI	CAYNNNNRTG	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	695
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	2 cut(s)	598, 691
Sau3AI	GATC	5 cut(s)	33, 115, 370, 464, 591
Sau96I	GGNCC	1 cut(s)	486
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	197, 451
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	9 cut(s)	86, 171, 204, 362, 501, 515, 560, 617, 642
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	130, 226, 568
SsiI	CCGC	2 cut(s)	63, 438
StyD4I	CCNGG	2 cut(s)	195, 449
StyI	CCWWGG	2 cut(s)	622, 651
TaaI	ACNGT	4 cut(s)	25, 251, 494, 575
TaqI	TCGA	3 cut(s)	27, 325, 467
TasI	AATT	3 cut(s)	130, 226, 568
TatI	WGTACW	2 cut(s)	277, 672
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	3 cut(s)	222, 433, 580
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	597, 690
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	260, 540
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	3 cut(s)	222, 433, 580
VpaK11BI	GGWCC	1 cut(s)	486
XapI	RAATTY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.