Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000766.1

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Reverse (-)

165821 .. 167911

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000766.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggagatggccaccagtccccgaaccgtcgaggagatcttcaaggattacggtgctagaagagccgccgtcgtccgtgctttgacttatgatgttgatgaattttacggactctgtgatccagaaaaggagaatttgtgtttgtatggacacccgaatgagtcctgggaagtgacgcttccggcagaggaagtcccgccggagcttcctgagccagcgcttgggatcaattttgcaagggatggcatgaaccgcaaggactggctttccctggttgctgttcatagcgattcttggctgctttctgtggctttctattttggagcaagacttaatcgtaatgagaggaaacgactttttagcttgatcaatgatctgcctaccgtctttgaagttgtgacggataggaaacccgctaaagacaagcctagtgtggatagcggaagcaaatcccgaggcagcacaaagagatctggtgatggaataatgaaaagcaatcctaagctagcagatgagagttttgaggaggaggatgacgaacatagtgaaactctttgtgggagctgtgggggaaattacaatgcagatgaattttggattggctgtgacatctgcgaaagatggttccatggaaaatgcgtgaagataacacctgccaaggccgagaacattaagcaatacaaatgcccgtcttgcagcttgaaaaggagcaggcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

239

Amino Acids

27.01

Weight (kDa)

5.31

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	661
AccB7I	CCANNNNNTGG	1 cut(s)	221
AciI	CCGC	5 cut(s)	66, 197, 253, 414, 441
AclWI	GGATC	2 cut(s)	113, 233
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	3 cut(s)	101, 133, 590
AfeI	AGCGCT	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	43, 392, 703
AjnI	CCWGG	2 cut(s)	164, 270
AjuI	GAANNNNNNNTTGG	2 cut(s)	582, 614
AluBI	AGCT	5 cut(s)	205, 363, 505, 564, 699
AluI	AGCT	5 cut(s)	205, 363, 505, 564, 699
AlwI	GGATC	2 cut(s)	113, 233
Ama87I	CYCGRG	1 cut(s)	453
Aor51HI	AGCGCT	1 cut(s)	219
AoxI	GGCC	2 cut(s)	9, 660
ApeKI	GCWGC	3 cut(s)	298, 459, 696
ApoI	RAATTY	3 cut(s)	101, 133, 590
AspLEI	GCGC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	488
AsuNHI	GCTAGC	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	11
BbvI	GCAGC	3 cut(s)	285, 471, 708
BccI	CCATC	3 cut(s)	236, 473, 615
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	166, 272
BclI	TGATCA	1 cut(s)	366
BfaI	CTAG	3 cut(s)	57, 429, 506
BfoI	RGCGCY	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	661
BglII	AGATCT	2 cut(s)	36, 470
BisI	GCNGC	4 cut(s)	66, 299, 460, 697
BlsI	GCNGC	4 cut(s)	67, 300, 461, 698
Bme1390I	CCNGG	2 cut(s)	166, 272
BmeT110I	CYCGRG	1 cut(s)	453
BmiI	GGNNCC	1 cut(s)	626
BmrFI	CCNGG	2 cut(s)	166, 272
BmtI	GCTAGC	1 cut(s)	509
Bpu10I	CCTNAGC	2 cut(s)	210, 501
BsaJI	CCNNGG	5 cut(s)	165, 270, 454, 628, 657
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	15, 266
BseBI	CCWGG	2 cut(s)	166, 272
BseDI	CCNNGG	5 cut(s)	165, 270, 454, 628, 657
BseGI	GGATG	2 cut(s)	247, 538
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	2 cut(s)	15, 266
BseRI	GAGGAG	3 cut(s)	47, 539, 542
BseXI	GCAGC	3 cut(s)	285, 471, 708
BshFI	GGCC	2 cut(s)	11, 662
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	182, 200
BslFI	GGGAC	2 cut(s)	3, 179
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmFI	GGGAC	2 cut(s)	3, 179
BsnI	GGCC	2 cut(s)	11, 662
BsoBI	CYCGRG	1 cut(s)	453
Bsp143I	GATC	6 cut(s)	36, 118, 225, 366, 373, 470
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	5 cut(s)	66, 197, 253, 414, 441
BspANI	GGCC	2 cut(s)	11, 662
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	626
BspMI	ACCTGC	1 cut(s)	661
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	2 cut(s)	113, 233
BspQI	GCTCTTC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	15, 266
BssECI	CCNNGG	5 cut(s)	165, 270, 454, 628, 657
BssMI	GATC	6 cut(s)	36, 118, 225, 366, 373, 470
BssT1I	CCWWGG	2 cut(s)	628, 657
Bst2UI	CCWGG	2 cut(s)	166, 272
Bst4CI	ACNGT	3 cut(s)	28, 53, 385
Bst6I	CTCTTC	1 cut(s)	55
BstC8I	GCNNGC	3 cut(s)	216, 507, 713
BstDEI	CTNAG	2 cut(s)	210, 501
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	2 cut(s)	247, 538
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	6 cut(s)	39, 121, 228, 369, 376, 473
BstMBI	GATC	6 cut(s)	36, 118, 225, 366, 373, 470
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 211, 252, 693
BstNI	CCWGG	2 cut(s)	166, 272
BstSCI	CCNGG	2 cut(s)	164, 270
BstV1I	GCAGC	3 cut(s)	285, 471, 708
BstX2I	RGATCY	2 cut(s)	36, 470
BstYI	RGATCY	2 cut(s)	36, 470
BsuRI	GGCC	2 cut(s)	11, 662
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	2 cut(s)	247, 538
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	3 cut(s)	216, 507, 713
CfoI	GCGC	1 cut(s)	220
CseI	GACGC	1 cut(s)	184
CviAII	CATG	2 cut(s)	247, 629
DdeI	CTNAG	2 cut(s)	210, 501
DpnI	GATC	6 cut(s)	38, 120, 227, 368, 375, 472
DpnII	GATC	6 cut(s)	36, 118, 225, 366, 373, 470
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	628, 657
Eco47III	AGCGCT	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	164, 270
EcoT14I	CCWWGG	2 cut(s)	628, 657
ErhI	CCWWGG	2 cut(s)	628, 657
FaeI	CATG	2 cut(s)	250, 632
FaiI	YATR	6 cut(s)	90, 147, 248, 285, 543, 630
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	2 cut(s)	3, 179
FatI	CATG	2 cut(s)	246, 628
FauI	CCCGC	2 cut(s)	204, 421
FbaI	TGATCA	1 cut(s)	366
Fnu4HI	GCNGC	4 cut(s)	66, 299, 460, 697
FokI	GGATG	2 cut(s)	254, 545
Fsp4HI	GCNGC	4 cut(s)	66, 299, 460, 697
FspBI	CTAG	3 cut(s)	57, 429, 506
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	4 cut(s)	66, 299, 460, 697
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	11, 662
HapII	CCGG	2 cut(s)	182, 200
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	2 cut(s)	250, 632
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	3 cut(s)	111, 161, 290
HpaII	CCGG	2 cut(s)	182, 200
HphI	GGTGA	1 cut(s)	488
Hpy188III	TCNNGA	3 cut(s)	122, 209, 453
Hpy99I	CGWCG	2 cut(s)	32, 74
HpyCH4III	ACNGT	3 cut(s)	28, 53, 385
HpyCH4V	TGCA	3 cut(s)	236, 584, 696
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 211, 252, 693
HpyF3I	CTNAG	2 cut(s)	210, 501
Hsp92II	CATG	2 cut(s)	250, 632
HspAI	GCGC	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	6 cut(s)	36, 118, 225, 366, 373, 470
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	4 cut(s)	202, 323, 561, 708
Lsp1109I	GCAGC	3 cut(s)	285, 471, 708
MaeI	CTAG	3 cut(s)	57, 429, 506
MaeIII	GTNAC	3 cut(s)	172, 397, 605
MalI	GATC	6 cut(s)	38, 120, 227, 368, 375, 472
MboI	GATC	6 cut(s)	36, 118, 225, 366, 373, 470
MboII	GAAGA	3 cut(s)	31, 72, 655
MflI	RGATCY	2 cut(s)	36, 470
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	5 cut(s)	101, 133, 229, 574, 590
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	2 cut(s)	105, 170
MnlI	CCTC	7 cut(s)	25, 181, 339, 449, 517, 520, 523
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	2 cut(s)	333, 672
MslI	CAYNNNNRTG	1 cut(s)	156
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	2 cut(s)	182, 200
MspR9I	CCNGG	2 cut(s)	166, 272
MvaI	CCWGG	2 cut(s)	166, 272
MwoI	GCNNNNNNNGC	4 cut(s)	62, 211, 252, 693
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	6 cut(s)	36, 118, 225, 366, 373, 470
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	2 cut(s)	250, 632
NlaIV	GGNNCC	1 cut(s)	626
NmeAIII	GCCGAG	1 cut(s)	688
NmuCI	GTSAC	3 cut(s)	172, 397, 605
PaqCI	CACCTGC	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	4 cut(s)	67, 300, 461, 698
PleI	GAGTC	2 cut(s)	105, 169
PpsI	GAGTC	2 cut(s)	105, 169
Psp6I	CCWGG	2 cut(s)	164, 270
PspGI	CCWGG	2 cut(s)	164, 270
PspN4I	GGNNCC	1 cut(s)	626
PsuI	RGATCY	2 cut(s)	36, 470
RseI	CAYNNNNRTG	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	333, 672
SatI	GCNGC	4 cut(s)	66, 299, 460, 697
Sau3AI	GATC	6 cut(s)	36, 118, 225, 366, 373, 470
SchI	GAGTC	2 cut(s)	105, 170
ScrFI	CCNGG	2 cut(s)	166, 272
SetI	ASST	6 cut(s)	207, 365, 507, 566, 655, 701
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	5 cut(s)	101, 133, 229, 574, 590
SsiI	CCGC	5 cut(s)	66, 197, 253, 414, 441
SspMI	CTAG	3 cut(s)	57, 429, 506
StyD4I	CCNGG	2 cut(s)	164, 270
StyI	CCWWGG	2 cut(s)	628, 657
TaaI	ACNGT	3 cut(s)	28, 53, 385
TaqI	TCGA	1 cut(s)	30
TasI	AATT	5 cut(s)	101, 133, 229, 574, 590
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	333, 672
Tru9I	TTAA	2 cut(s)	333, 672
TseFI	GTSAC	3 cut(s)	172, 397, 605
TseI	GCWGC	3 cut(s)	298, 459, 696
Tsp45I	GTSAC	3 cut(s)	172, 397, 605
TspDTI	ATGAA	5 cut(s)	114, 263, 272, 503, 603
TspGWI	ACGGA	3 cut(s)	65, 123, 416
Van91I	CCANNNNNTGG	1 cut(s)	221
XapI	RAATTY	3 cut(s)	101, 133, 590
XspI	CTAG	3 cut(s)	57, 429, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.