Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Forward (+)

38859491 .. 38862029

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGATGGCCACCAGTCCCCGAACCGTCGAGGAGATCTTCAAGGATTACGGTGCTAGAAGAGCCGCCGTCGTCCGTGCTTTGACTTATGAAAAGGAGAATTTGTGTTTGTATGGACACCCGAATGAGTCCTGGGAAGTGACACTTCCGGCAGAGGAAGTCCCGCCGGAGCTTCCTGAGCCAGCACTCGGGATCAATTTTGCAAGGGATGGCATGAACCGCAAGGACTGGCTTTCCCTGGTCGCTGTTCATAGCGATTCTTGGCTGCTTTCTGTGGCTTTCTATTTTGGAGCACGACTTAATCGTAATGAGAGGAAACGACTTTTTAGCTTGATCAATGATCTGCCTACCGTCTTTGAAGTTGTGACGGATAGGAAACCCGCTAAAGACAAGCCTAGTGTGGATAGCGGAAGCAAATCCCGAGGCAGCACAAAGAGATCTGGTGATGGAATAATGAAAAGCAATCCTAAGCTAGCAGATGAGAGTTTTGAGGAGGAGGATGATGAACATAGTGAAACTCTTTGTGGGAGCTGTGGCGGAAATTACAATGCAGATGAATTTTGGATTGGCTGTGACATCTGCGAAAGATGGTTCCATGGAAAATGCGTGAAGATAACACCAGCCAAGGCCGAGAACATCAAACAATACAAATGCCCGTCTTGCAGCTTGAAAAGGAGCAGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

228

Amino Acids

25.76

Weight (kDa)

5.91

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	9 - 123	5.8e-57	Alfin
PHD	PF00628	175 - 221	1.1e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	66, 164, 220, 381, 408, 537
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	2 cut(s)	100, 557
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	43, 359, 670
AjnI	CCWGG	2 cut(s)	131, 237
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AluBI	AGCT	5 cut(s)	172, 330, 472, 531, 666
AluI	AGCT	5 cut(s)	172, 330, 472, 531, 666
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	200
Ama87I	CYCGRG	2 cut(s)	188, 420
AoxI	GGCC	2 cut(s)	9, 627
ApeKI	GCWGC	3 cut(s)	265, 426, 663
ApoI	RAATTY	2 cut(s)	100, 557
AsuHPI	GGTGA	1 cut(s)	455
AsuNHI	GCTAGC	1 cut(s)	472
AvaI	CYCGRG	2 cut(s)	188, 420
BalI	TGGCCA	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	3 cut(s)	252, 438, 675
BccI	CCATC	3 cut(s)	203, 440, 582
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	133, 239
BclI	TGATCA	1 cut(s)	333
BfaI	CTAG	3 cut(s)	57, 396, 473
BglII	AGATCT	2 cut(s)	36, 437
BisI	GCNGC	4 cut(s)	66, 266, 427, 664
BlsI	GCNGC	4 cut(s)	67, 267, 428, 665
Bme1390I	CCNGG	2 cut(s)	133, 239
BmeT110I	CYCGRG	2 cut(s)	188, 420
BmiI	GGNNCC	1 cut(s)	593
BmrFI	CCNGG	2 cut(s)	133, 239
BmtI	GCTAGC	1 cut(s)	476
Bpu10I	CCTNAGC	2 cut(s)	177, 468
BsaJI	CCNNGG	5 cut(s)	132, 237, 421, 595, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	15, 233
BseBI	CCWGG	2 cut(s)	133, 239
BseDI	CCNNGG	5 cut(s)	132, 237, 421, 595, 624
BseGI	GGATG	2 cut(s)	214, 505
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	15, 233
BseRI	GAGGAG	3 cut(s)	47, 506, 509
BseXI	GCAGC	3 cut(s)	252, 438, 675
BshFI	GGCC	2 cut(s)	11, 629
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	2 cut(s)	188, 420
BsiSI	CCGG	2 cut(s)	149, 167
BslFI	GGGAC	2 cut(s)	3, 146
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	3, 146
BsnI	GGCC	2 cut(s)	11, 629
BsoBI	CYCGRG	2 cut(s)	188, 420
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	36, 192, 333, 340, 437
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	6 cut(s)	66, 164, 220, 381, 408, 537
BspANI	GGCC	2 cut(s)	11, 629
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	593
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	15, 233
BssECI	CCNNGG	5 cut(s)	132, 237, 421, 595, 624
BssMI	GATC	5 cut(s)	36, 192, 333, 340, 437
BssT1I	CCWWGG	2 cut(s)	595, 624
Bst2UI	CCWGG	2 cut(s)	133, 239
Bst4CI	ACNGT	3 cut(s)	28, 53, 352
Bst6I	CTCTTC	1 cut(s)	55
BstC8I	GCNNGC	3 cut(s)	183, 474, 680
BstDEI	CTNAG	2 cut(s)	177, 468
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	2 cut(s)	214, 505
BstKTI	GATC	5 cut(s)	39, 195, 336, 343, 440
BstMBI	GATC	5 cut(s)	36, 192, 333, 340, 437
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 178, 219, 660
BstNI	CCWGG	2 cut(s)	133, 239
BstSCI	CCNGG	2 cut(s)	131, 237
BstV1I	GCAGC	3 cut(s)	252, 438, 675
BstX2I	RGATCY	2 cut(s)	36, 437
BstYI	RGATCY	2 cut(s)	36, 437
BsuRI	GGCC	2 cut(s)	11, 629
BtgI	CCRYGG	1 cut(s)	595
BtsCI	GGATG	2 cut(s)	214, 505
Cac8I	GCNNGC	3 cut(s)	183, 474, 680
CviAII	CATG	2 cut(s)	214, 596
DdeI	CTNAG	2 cut(s)	177, 468
DpnI	GATC	5 cut(s)	38, 194, 335, 342, 439
DpnII	GATC	5 cut(s)	36, 192, 333, 340, 437
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	552
Eco130I	CCWWGG	2 cut(s)	595, 624
Eco88I	CYCGRG	2 cut(s)	188, 420
EcoRII	CCWGG	2 cut(s)	131, 237
EcoT14I	CCWWGG	2 cut(s)	595, 624
ErhI	CCWWGG	2 cut(s)	595, 624
FaeI	CATG	2 cut(s)	217, 599
FaiI	YATR	6 cut(s)	90, 114, 215, 252, 510, 597
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	2 cut(s)	3, 146
FatI	CATG	2 cut(s)	213, 595
FauI	CCCGC	2 cut(s)	171, 388
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	4 cut(s)	66, 266, 427, 664
FokI	GGATG	2 cut(s)	221, 512
Fsp4HI	GCNGC	4 cut(s)	66, 266, 427, 664
FspBI	CTAG	3 cut(s)	57, 396, 473
GluI	GCNGC	4 cut(s)	66, 266, 427, 664
HaeIII	GGCC	2 cut(s)	11, 629
HapII	CCGG	2 cut(s)	149, 167
Hin1II	CATG	2 cut(s)	217, 599
HinfI	GANTC	2 cut(s)	128, 257
HpaII	CCGG	2 cut(s)	149, 167
HphI	GGTGA	1 cut(s)	455
Hpy188III	TCNNGA	3 cut(s)	176, 190, 420
Hpy99I	CGWCG	2 cut(s)	32, 74
HpyCH4III	ACNGT	3 cut(s)	28, 53, 352
HpyCH4V	TGCA	3 cut(s)	203, 551, 663
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 178, 219, 660
HpyF3I	CTNAG	2 cut(s)	177, 468
Hsp92II	CATG	2 cut(s)	217, 599
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	5 cut(s)	36, 192, 333, 340, 437
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	4 cut(s)	169, 290, 528, 675
Lsp1109I	GCAGC	3 cut(s)	252, 438, 675
MaeI	CTAG	3 cut(s)	57, 396, 473
MaeIII	GTNAC	3 cut(s)	139, 364, 572
MalI	GATC	5 cut(s)	38, 194, 335, 342, 439
MboI	GATC	5 cut(s)	36, 192, 333, 340, 437
MboII	GAAGA	3 cut(s)	31, 72, 622
MflI	RGATCY	2 cut(s)	36, 437
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	4 cut(s)	100, 196, 541, 557
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	7 cut(s)	25, 148, 306, 416, 484, 487, 490
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	2 cut(s)	149, 167
MspR9I	CCNGG	2 cut(s)	133, 239
MvaI	CCWGG	2 cut(s)	133, 239
MwoI	GCNNNNNNNGC	4 cut(s)	62, 178, 219, 660
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	5 cut(s)	36, 192, 333, 340, 437
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	217, 599
NlaIV	GGNNCC	1 cut(s)	593
NmeAIII	GCCGAG	1 cut(s)	655
NmuCI	GTSAC	3 cut(s)	139, 364, 572
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	4 cut(s)	67, 267, 428, 665
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	131, 237
PspGI	CCWGG	2 cut(s)	131, 237
PspN4I	GGNNCC	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	36, 437
RseI	CAYNNNNRTG	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	4 cut(s)	66, 266, 427, 664
Sau3AI	GATC	5 cut(s)	36, 192, 333, 340, 437
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	133, 239
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	5 cut(s)	174, 332, 474, 533, 668
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	4 cut(s)	100, 196, 541, 557
SsiI	CCGC	6 cut(s)	66, 164, 220, 381, 408, 537
SspMI	CTAG	3 cut(s)	57, 396, 473
StyD4I	CCNGG	2 cut(s)	131, 237
StyI	CCWWGG	2 cut(s)	595, 624
TaaI	ACNGT	3 cut(s)	28, 53, 352
TaqI	TCGA	1 cut(s)	30
TasI	AATT	4 cut(s)	100, 196, 541, 557
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseFI	GTSAC	3 cut(s)	139, 364, 572
TseI	GCWGC	3 cut(s)	265, 426, 663
Tsp45I	GTSAC	3 cut(s)	139, 364, 572
TspDTI	ATGAA	6 cut(s)	105, 230, 239, 470, 519, 570
TspGWI	ACGGA	2 cut(s)	65, 383
XapI	RAATTY	2 cut(s)	100, 557
XspI	CTAG	3 cut(s)	57, 396, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.