Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Forward (+)

18923763 .. 18926848

Gene Structure 3086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24541.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCCATCTACGAGCCCTCCTCGCAGCGTCGAAGAGATCTTCAAGGACTACGCCGCCCGTCGCTCCGGCATCGTTCGCGCCCTCACCAACGATGTGGATGAGTTCTACGCGCTCTGCGATCCAGAGAAGGAGAATTTGTGTTTGTATGGACACCCGGATGAGACGTGGGAGGTGACTCTGCCGGCGGAGGAAGTGCCGCCAGAGCTTCCGGAGCCTGCGTTGGGCATTAATTTCGCGAGAGATGGGATGAAGCGGCAGGATTGGCTGTCTTTGATTGCAGTGCATAGTGATTCTTGGTTGCTGTCTGTGTCTTTCTACTTTGGGGCTCGCCTTAATCGGAATGAGAGGAAGCGTCTATTTGGCTTGACCAATGATCTGCCAACAATATTTGAAGTTGTAACTGGAAGGATGCCCACTAAAGACAAACCCAGTATGGATAGTGGAAGCAAATCCAGGAACAACGCAAAGAGATCAACTGATGGACCAATGAGGACCAATAGTACGTTGCTCAATGAAAATTATGTGGAGGATGAAGATGAGCATAGTGAAACTCTGTGTGGAAGCTGCGGGGGAAATTACAGTGCTAATGAGTTTTGGATTGGCTGTGACATCTGCGAGAGATGGTACCATGGGAAGTGTGTGAAGATAACACCATCCAAGGCCGAGTATATCCAGCATTACAAATGCCCTTCTTGCTCAAAGAAGGGAAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_2 Clp_N

Protein Analysis

239

Amino Acids

27.02

Weight (kDa)

5.5

Isoelectric Point (pI)

57.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	9 - 134	1.2e-68	Alfin
PHD	PF00628	186 - 232	1.5e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	624
AccII	CGCG	3 cut(s)	78, 110, 236
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	5 cut(s)	54, 185, 197, 253, 567
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	133
AfaI	GTAC	2 cut(s)	502, 626
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	43, 392
AjiI	CACGTC	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	2 cut(s)	205, 564
AluI	AGCT	2 cut(s)	205, 564
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	1 cut(s)	660
ApeKI	GCWGC	2 cut(s)	24, 564
ApoI	RAATTY	1 cut(s)	133
AseI	ATTAAT	1 cut(s)	228
Asp718I	GGTACC	1 cut(s)	624
AspLEI	GCGC	2 cut(s)	80, 112
AspS9I	GGNCC	2 cut(s)	482, 492
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	76, 184
AvaII	GGWCC	2 cut(s)	482, 492
BanI	GGYRCC	1 cut(s)	624
BanII	GRGCYC	2 cut(s)	17, 328
BbvI	GCAGC	2 cut(s)	36, 551
BccI	CCATC	5 cut(s)	13, 236, 473, 615, 661
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	5 cut(s)	25, 54, 197, 254, 565
BlsI	GCNGC	5 cut(s)	26, 55, 198, 255, 566
Bme1390I	CCNGG	2 cut(s)	155, 454
Bme18I	GGWCC	2 cut(s)	482, 492
BmgBI	CACGTC	1 cut(s)	165
BmgT120I	GGNCC	2 cut(s)	482, 492
BmiI	GGNNCC	2 cut(s)	213, 626
BmrFI	CCNGG	2 cut(s)	155, 454
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	2 cut(s)	78, 399
BmuI	ACTGGG	1 cut(s)	423
BplI	GAGNNNNNCTC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	628, 657
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 122, 152, 203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	406, 429
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	2 cut(s)	628, 657
BseGI	GGATG	6 cut(s)	103, 163, 252, 414, 535, 653
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	406, 429
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	36, 551
Bsh1236I	CGCG	3 cut(s)	78, 110, 236
BshFI	GGCC	1 cut(s)	662
BshNI	GGYRCC	1 cut(s)	624
BsiSI	CCGG	4 cut(s)	66, 155, 182, 209
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	155
BsmBI	CGTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	662
Bsp1286I	GDGCHC	2 cut(s)	17, 328
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	36, 118, 373, 470
Bsp19I	CCATGG	1 cut(s)	628
Bsp68I	TCGCGA	1 cut(s)	236
BspACI	CCGC	5 cut(s)	54, 185, 197, 253, 567
BspANI	GGCC	1 cut(s)	662
BspEI	TCCGGA	1 cut(s)	208
BspFNI	CGCG	3 cut(s)	78, 110, 236
BspLI	GGNNCC	2 cut(s)	213, 626
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	406, 429
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	628, 657
BssMI	GATC	4 cut(s)	36, 118, 373, 470
BssT1I	CCWWGG	2 cut(s)	628, 657
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	2 cut(s)	581, 714
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	183, 216, 328
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	6 cut(s)	103, 163, 252, 414, 535, 653
BstFNI	CGCG	3 cut(s)	78, 110, 236
BstHHI	GCGC	2 cut(s)	80, 112
BstKTI	GATC	4 cut(s)	39, 121, 376, 473
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	4 cut(s)	36, 118, 373, 470
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 75, 202, 211, 262, 693
BstNI	CCWGG	1 cut(s)	454
BstSCI	CCNGG	2 cut(s)	153, 452
BstUI	CGCG	3 cut(s)	78, 110, 236
BstV1I	GCAGC	2 cut(s)	36, 551
BstX2I	RGATCY	1 cut(s)	36
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	662
BtgI	CCRYGG	1 cut(s)	628
BtrI	CACGTC	1 cut(s)	165
BtsCI	GGATG	6 cut(s)	103, 163, 252, 414, 535, 653
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	285, 586
BtuMI	TCGCGA	1 cut(s)	236
Cac8I	GCNNGC	3 cut(s)	183, 216, 328
CfoI	GCGC	2 cut(s)	80, 112
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	482, 492
CseI	GACGC	2 cut(s)	16, 341
Csp6I	GTAC	2 cut(s)	501, 625
CviAII	CATG	1 cut(s)	629
CviJI	RGCY	9 cut(s)	15, 205, 214, 265, 326, 363, 564, 603, 662
CviKI_1	RGCY	9 cut(s)	15, 205, 214, 265, 326, 363, 564, 603, 662
CviQI	GTAC	2 cut(s)	501, 625
DpnI	GATC	4 cut(s)	38, 120, 375, 472
DpnII	GATC	4 cut(s)	36, 118, 373, 470
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	628, 657
Eco24I	GRGCYC	2 cut(s)	17, 328
Eco47I	GGWCC	2 cut(s)	482, 492
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	628, 657
EcoT38I	GRGCYC	2 cut(s)	17, 328
ErhI	CCWWGG	2 cut(s)	628, 657
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	1 cut(s)	632
FaiI	YATR	7 cut(s)	147, 285, 434, 522, 543, 630, 669
FatI	CATG	1 cut(s)	628
FauI	CCCGC	1 cut(s)	560
Fnu4HI	GCNGC	5 cut(s)	25, 54, 197, 254, 565
FokI	GGATG	6 cut(s)	110, 170, 259, 421, 542, 640
FriOI	GRGCYC	2 cut(s)	17, 328
Fsp4HI	GCNGC	5 cut(s)	25, 54, 197, 254, 565
GlaI	GCGC	2 cut(s)	79, 111
GluI	GCNGC	5 cut(s)	25, 54, 197, 254, 565
HaeIII	GGCC	1 cut(s)	662
HapII	CCGG	4 cut(s)	66, 155, 182, 209
HgaI	GACGC	2 cut(s)	16, 341
HhaI	GCGC	2 cut(s)	80, 112
Hin1II	CATG	1 cut(s)	632
Hin6I	GCGC	2 cut(s)	78, 110
HinP1I	GCGC	2 cut(s)	78, 110
HinfI	GANTC	2 cut(s)	175, 290
HpaII	CCGG	4 cut(s)	66, 155, 182, 209
HphI	GGTGA	2 cut(s)	76, 184
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	3 cut(s)	122, 209, 235
Hpy99I	CGWCG	2 cut(s)	32, 63
HpyAV	CCTTC	4 cut(s)	121, 399, 697, 699
HpyCH4III	ACNGT	2 cut(s)	581, 714
HpyCH4IV	ACGT	2 cut(s)	164, 503
HpyCH4V	TGCA	2 cut(s)	278, 283
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 75, 202, 211, 262, 693
HpySE526I	ACGT	2 cut(s)	164, 503
Hsp92II	CATG	1 cut(s)	632
HspAI	GCGC	2 cut(s)	78, 110
Kpn2I	TCCGGA	1 cut(s)	208
KpnI	GGTACC	1 cut(s)	628
KroI	GCCGGC	1 cut(s)	181
KroNI	GCCGGC	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	36, 118, 373, 470
LmnI	GCTCC	2 cut(s)	68, 211
Lsp1109I	GCAGC	2 cut(s)	36, 551
LweI	GCATC	2 cut(s)	78, 399
MaeII	ACGT	2 cut(s)	164, 503
MaeIII	GTNAC	3 cut(s)	172, 397, 605
MalI	GATC	4 cut(s)	38, 120, 375, 472
MboI	GATC	4 cut(s)	36, 118, 373, 470
MboII	GAAGA	4 cut(s)	31, 44, 545, 655
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	17, 328
MluCI	AATT	4 cut(s)	133, 229, 517, 574
MlyI	GAGTC	1 cut(s)	169
MnlI	CCTC	8 cut(s)	27, 30, 92, 163, 181, 339, 483, 520
MroI	TCCGGA	1 cut(s)	208
MroNI	GCCGGC	1 cut(s)	181
MseI	TTAA	2 cut(s)	228, 333
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	4 cut(s)	66, 155, 182, 209
MspR9I	CCNGG	2 cut(s)	155, 454
MvaI	CCWGG	1 cut(s)	454
MvnI	CGCG	3 cut(s)	78, 110, 236
MwoI	GCNNNNNNNGC	6 cut(s)	21, 75, 202, 211, 262, 693
NaeI	GCCGGC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	4 cut(s)	36, 118, 373, 470
NgoMIV	GCCGGC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	632
NlaIV	GGNNCC	2 cut(s)	213, 626
NmeAIII	GCCGAG	1 cut(s)	688
NmuCI	GTSAC	2 cut(s)	172, 605
NruI	TCGCGA	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	452
PkrI	GCNGC	5 cut(s)	26, 55, 198, 255, 566
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	213, 626
PspPI	GGNCC	2 cut(s)	482, 492
PsuI	RGATCY	1 cut(s)	36
RruI	TCGCGA	1 cut(s)	236
RsaI	GTAC	2 cut(s)	502, 626
RsaNI	GTAC	2 cut(s)	501, 625
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	228, 333
SatI	GCNGC	5 cut(s)	25, 54, 197, 254, 565
Sau3AI	GATC	4 cut(s)	36, 118, 373, 470
Sau96I	GGNCC	2 cut(s)	482, 492
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	155, 454
SduI	GDGCHC	2 cut(s)	17, 328
SetI	ASST	5 cut(s)	167, 174, 207, 506, 566
SfaNI	GCATC	2 cut(s)	78, 399
SinI	GGWCC	2 cut(s)	482, 492
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	4 cut(s)	133, 229, 517, 574
SsiI	CCGC	5 cut(s)	54, 185, 197, 253, 567
SspI	AATATT	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	153, 452
StyI	CCWWGG	2 cut(s)	628, 657
TaaI	ACNGT	2 cut(s)	581, 714
TaiI	ACGT	2 cut(s)	167, 506
TaqI	TCGA	1 cut(s)	30
TasI	AATT	4 cut(s)	133, 229, 517, 574
TauI	GCSGC	3 cut(s)	56, 199, 256
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	228, 333
Tru9I	TTAA	2 cut(s)	228, 333
TscAI	CASTG	2 cut(s)	285, 586
TseFI	GTSAC	2 cut(s)	172, 605
TseI	GCWGC	2 cut(s)	24, 564
Tsp45I	GTSAC	2 cut(s)	172, 605
TspDTI	ATGAA	3 cut(s)	263, 528, 546
TspRI	CASTG	2 cut(s)	285, 586
VpaK11BI	GGWCC	2 cut(s)	482, 492
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.