Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Forward (+)

16502566 .. 16505529

Gene Structure 2964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGAAATCCCAATACAATATCTGAACCATTCCTTCTGTTTTTACAAAAATATATATCAAATTACAAACAAATTGGGAAAATGCCATCGTCGAGCCCTCGCACCGTCGAAGAGATCTTCAAGGACTACAGCGCCCGTCGCTCCGCCGTCATTCGCGCCCTCACCCACGATGTGGACGAGTTCTACTCCCTTTGCGATCCAGAGAAGGAGAATTTGTGCTTGTATGGACACCCGGATGAGTCGTGGGAGGTGACTCTGCCGGCAGAGGAAGTTCCCCCCGAGCTTCCTGAGCCTGCACTGGGCATCAATTTCGCAAGAGATGGGATGAACCGTAAAGATTGGCTGTCATTGATTGCAGTACATAGCGATTCTTGGTTGCTCTCTGTGGCTTTCTACTTTGGTGCTCGACTTAATCGGAATGAGAGGAAGCGTCTGTTTAGCTTGACAAATGATCTGCCTACAATCTTTGAAGTCGTAACTGGAAGGAAGCCCGTAAAAGACAAGCCCAGTGGGGATAGTGGAAGTAAATCCAGGAACTCAAAGAGATCGATTGACGGACAAGCAAGGACCAACAGTAAGGTACATGATGTAAGCTATTTGGAGGATGAAGATGAGCATAGTGAAACCCTATGTGGAAGCTGTGGGGGAAATTACAGTGCTAATGAGTTTTGGATCGGCTGCGACATCTGCGAGAGGTGGTACCATGGGAAGTGTGTCAAGGTAACACCAGCCAAGGCAGAATACATTCAGCAGTACAAATGTCCTTCTTGCAGCACAAAGAAGAGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

264

Amino Acids

29.94

Weight (kDa)

6.61

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	699
AccB1I	GGYRCC	1 cut(s)	699
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccII	CGCG	1 cut(s)	156
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	191, 680
AcsI	RAATTY	1 cut(s)	211
AdeI	CACNNNGTG	1 cut(s)	172
AfaI	GTAC	4 cut(s)	360, 582, 701, 755
AfiI	CCNNNNNNNGG	2 cut(s)	172, 299
AgsI	TTSAA	2 cut(s)	121, 470
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	4 cut(s)	283, 441, 594, 639
AluI	AGCT	4 cut(s)	283, 441, 594, 639
Alw21I	GWGCWC	1 cut(s)	406
AlwI	GGATC	2 cut(s)	191, 680
Ama87I	CYCGRG	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	678, 771
ApoI	RAATTY	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	744
Asp718I	GGTACC	1 cut(s)	699
AspLEI	GCGC	2 cut(s)	134, 158
AspS9I	GGNCC	1 cut(s)	567
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	154, 262
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	699
BanII	GRGCYC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	665, 783
BccI	CCATC	2 cut(s)	94, 314
BceAI	ACGGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	135
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	2 cut(s)	679, 772
BlsI	GCNGC	2 cut(s)	680, 773
Bme1390I	CCNGG	2 cut(s)	233, 532
Bme18I	GGWCC	1 cut(s)	567
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	567
BmiI	GGNNCC	1 cut(s)	701
BmrFI	CCNGG	2 cut(s)	233, 532
BmrI	ACTGGG	2 cut(s)	308, 501
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	2 cut(s)	308, 501
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu10I	CCTNAGC	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	703, 732
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 299
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	3 cut(s)	303, 484, 507
BseBI	CCWGG	1 cut(s)	532
BseCI	ATCGAT	1 cut(s)	548
BseDI	CCNNGG	2 cut(s)	703, 732
BseGI	GGATG	3 cut(s)	241, 330, 610
BseLI	CCNNNNNNNGG	2 cut(s)	172, 299
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	3 cut(s)	303, 484, 507
BseXI	GCAGC	2 cut(s)	665, 783
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	699
BshVI	ATCGAT	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	233, 260
BslI	CCNNNNNNNGG	2 cut(s)	172, 299
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	98, 406
Bsp143I	GATC	5 cut(s)	114, 196, 451, 545, 672
Bsp19I	CCATGG	1 cut(s)	703
BspACI	CCGC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	548
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	701
BspPI	GGATC	2 cut(s)	191, 680
BspQI	GCTCTTC	1 cut(s)	776
BspT107I	GGYRCC	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	3 cut(s)	303, 484, 507
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	703, 732
BssMI	GATC	5 cut(s)	114, 196, 451, 545, 672
BssT1I	CCWWGG	2 cut(s)	703, 732
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	4 cut(s)	106, 332, 575, 656
Bst6I	CTCTTC	2 cut(s)	105, 776
BstC8I	GCNNGC	2 cut(s)	261, 294
BstDEI	CTNAG	1 cut(s)	288
BstDSI	CCRYGG	1 cut(s)	703
BstF5I	GGATG	3 cut(s)	241, 330, 610
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	134, 158
BstKTI	GATC	5 cut(s)	117, 199, 454, 548, 675
BstMBI	GATC	5 cut(s)	114, 196, 451, 545, 672
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 289, 687
BstNI	CCWGG	1 cut(s)	532
BstSCI	CCNGG	2 cut(s)	231, 530
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	665, 783
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	548
BsuTUI	ATCGAT	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	703
BtsCI	GGATG	3 cut(s)	241, 330, 610
BtsIMutI	CAGTG	3 cut(s)	296, 514, 661
Cac8I	GCNNGC	2 cut(s)	261, 294
CfoI	GCGC	2 cut(s)	134, 158
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	567
ClaI	ATCGAT	1 cut(s)	548
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	4 cut(s)	359, 581, 700, 754
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	2 cut(s)	584, 704
CviQI	GTAC	4 cut(s)	359, 581, 700, 754
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	5 cut(s)	116, 198, 453, 547, 674
DpnII	GATC	5 cut(s)	114, 196, 451, 545, 672
DraIII	CACNNNGTG	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	105, 776
EarI	CTCTTC	2 cut(s)	105, 776
EciI	GGCGGA	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	703, 732
Eco24I	GRGCYC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	567
Eco88I	CYCGRG	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	530
EcoT14I	CCWWGG	2 cut(s)	703, 732
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	2 cut(s)	703, 732
FaeI	CATG	2 cut(s)	587, 707
FaiI	YATR	8 cut(s)	54, 56, 225, 363, 585, 618, 631, 705
FatI	CATG	2 cut(s)	583, 703
Fnu4HI	GCNGC	2 cut(s)	679, 772
FokI	GGATG	3 cut(s)	248, 337, 617
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	679, 772
GlaI	GCGC	2 cut(s)	133, 157
GluI	GCNGC	2 cut(s)	679, 772
HaeII	RGCGCY	1 cut(s)	135
HapII	CCGG	2 cut(s)	233, 260
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	2 cut(s)	134, 158
Hin1II	CATG	2 cut(s)	587, 707
Hin6I	GCGC	2 cut(s)	132, 156
HinP1I	GCGC	2 cut(s)	132, 156
HinfI	GANTC	3 cut(s)	239, 253, 368
HpaII	CCGG	2 cut(s)	233, 260
HphI	GGTGA	2 cut(s)	154, 262
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	25, 417
Hpy188III	TCNNGA	2 cut(s)	200, 287
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	3 cut(s)	94, 110, 141
HpyAV	CCTTC	4 cut(s)	44, 199, 477, 774
HpyCH4III	ACNGT	4 cut(s)	106, 332, 575, 656
HpyCH4V	TGCA	3 cut(s)	296, 356, 771
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 289, 687
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	587, 707
HspAI	GCGC	2 cut(s)	132, 156
KpnI	GGTACC	1 cut(s)	703
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Kzo9I	GATC	5 cut(s)	114, 196, 451, 545, 672
LguI	GCTCTTC	1 cut(s)	776
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	2 cut(s)	665, 783
LweI	GCATC	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	250, 475, 721
MalI	GATC	5 cut(s)	116, 198, 453, 547, 674
MboI	GATC	5 cut(s)	114, 196, 451, 545, 672
MboII	GAAGA	3 cut(s)	109, 122, 620
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	2 cut(s)	98, 406
MluCI	AATT	5 cut(s)	61, 72, 211, 307, 649
MlyI	GAGTC	2 cut(s)	247, 248
MnlI	CCTC	7 cut(s)	108, 170, 241, 259, 417, 595, 687
MroNI	GCCGGC	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	2 cut(s)	233, 260
MspR9I	CCNGG	2 cut(s)	233, 532
MvaI	CCWGG	1 cut(s)	532
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	138, 289, 687
NaeI	GCCGGC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	703
NdeII	GATC	5 cut(s)	114, 196, 451, 545, 672
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	587, 707
NlaIV	GGNNCC	1 cut(s)	701
NmuCI	GTSAC	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	776
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	530
PkrI	GCNGC	2 cut(s)	680, 773
PleI	GAGTC	2 cut(s)	247, 247
PpsI	GAGTC	2 cut(s)	247, 247
Psp6I	CCWGG	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	701
PspPI	GGNCC	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	4 cut(s)	360, 582, 701, 755
RsaNI	GTAC	4 cut(s)	359, 581, 700, 754
RseI	CAYNNNNRTG	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	776
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	679, 772
Sau3AI	GATC	5 cut(s)	114, 196, 451, 545, 672
Sau96I	GGNCC	1 cut(s)	567
SchI	GAGTC	2 cut(s)	247, 248
ScrFI	CCNGG	2 cut(s)	233, 532
SduI	GDGCHC	2 cut(s)	98, 406
SetI	ASST	8 cut(s)	252, 285, 443, 582, 596, 641, 698, 723
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	567
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	5 cut(s)	61, 72, 211, 307, 649
SsiI	CCGC	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	231, 530
StyI	CCWWGG	2 cut(s)	703, 732
TaaI	ACNGT	4 cut(s)	106, 332, 575, 656
TaqI	TCGA	4 cut(s)	92, 108, 406, 548
TasI	AATT	5 cut(s)	61, 72, 211, 307, 649
TatI	WGTACW	2 cut(s)	358, 753
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	3 cut(s)	303, 514, 661
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	2 cut(s)	678, 771
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	341, 621
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	3 cut(s)	303, 514, 661
Van91I	CCANNNNNTGG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	567
XapI	RAATTY	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.