Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Forward (+)

22291077 .. 22293891

Gene Structure 2815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20120.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCGGGATTCACTTCTATTAACGAGGTCAGACCGTCCCTACTGTTTTTACAAAAATATATATCAAATTACCAACAAATTGGGAAAAATGCCATCGTCGAGCCCTCGCACCGTCGAAGAGATCTTCAAGGACTACAGCGCCCGGCGCTCCGCCGTCATTCGAGCCCTCACCAACGATGTGGACGAGTTCTATTCGCTTTGCGATCCAGAGAAGGAGAATTTGTGCTTGTATGGACACCCGGATGAGTCGTGGGAGGTGACTTTGCCGGCAGAGGAAGTTCCCCCGGAGCTTCCTGAGCCTGCACTGGGCATCAATTTCGCAAGAGATGGGATGAACCGTAAAGATTGGCTGTCATTGATTGCAGTACATAGCGACTCTTGGTTGCTCTCTGTGGCCTTCTACTTTGGTGCTCGACTTAATCGGAATGAGAGGAAGCGTCTGTTTAGCTTGACAAATGATCTGCCTACAATCTTTGAAGTCGTAACTGGAAGGAAGCCTGTAAAAGACAAGCCCAGTGGGGATATTGGAAGTAAATCCAGGAACTCAAAGAGATCGATTGACGGACAAATAAGGACCAACAATAAGGTACATGATGCAAGCTATATGGAGGATGAAGATGAGCATAGTGAAACCCTATGTGGAAGCTGTGGAGGAAATTACAGTGCTAATGAGTTTTCGATCGGCTGCGACATCTGTGAGAGGTGGTACCATGGGAAGTGTGTCAAGATAACACCAGCCAAGGCAGAATCGATTCCGCAGTATAAATGTCCTCCTTGCAGCACAAAGAAGAGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

266

Amino Acids

30.11

Weight (kDa)

6.94

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	705
AccB1I	GGYRCC	1 cut(s)	705
AciI	CCGC	3 cut(s)	4, 150, 755
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	217
AfaI	GTAC	3 cut(s)	366, 588, 707
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	127, 476
AjnI	CCWGG	1 cut(s)	536
AluBI	AGCT	4 cut(s)	289, 447, 600, 645
AluI	AGCT	4 cut(s)	289, 447, 600, 645
Alw21I	GWGCWC	1 cut(s)	412
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	2 cut(s)	684, 777
ApoI	RAATTY	1 cut(s)	217
Asp700I	GAANNNNTTC	1 cut(s)	750
Asp718I	GGTACC	1 cut(s)	705
AspLEI	GCGC	2 cut(s)	140, 147
AspS9I	GGNCC	1 cut(s)	573
AsuC2I	CCSGG	3 cut(s)	142, 239, 284
AsuHPI	GGTGA	2 cut(s)	160, 268
AvaII	GGWCC	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	705
BanII	GRGCYC	2 cut(s)	104, 166
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	671, 789
BccI	CCATC	2 cut(s)	100, 320
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	1 cut(s)	538
BcnI	CCSGG	3 cut(s)	142, 239, 284
BfmI	CTRYAG	1 cut(s)	133
BfoI	RGCGCY	2 cut(s)	141, 148
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	2 cut(s)	685, 778
BlsI	GCNGC	2 cut(s)	686, 779
Bme1390I	CCNGG	4 cut(s)	142, 239, 284, 538
Bme18I	GGWCC	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	573
BmiI	GGNNCC	1 cut(s)	707
BmrFI	CCNGG	4 cut(s)	142, 239, 284, 538
BmrI	ACTGGG	2 cut(s)	314, 507
BmsI	GCATC	2 cut(s)	318, 583
BmuI	ACTGGG	2 cut(s)	314, 507
Bpu10I	CCTNAGC	1 cut(s)	294
BpuMI	CCSGG	3 cut(s)	142, 239, 284
Bsa29I	ATCGAT	2 cut(s)	554, 749
BsaJI	CCNNGG	3 cut(s)	282, 709, 738
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	3 cut(s)	309, 490, 513
BseBI	CCWGG	1 cut(s)	538
BseCI	ATCGAT	2 cut(s)	554, 749
BseDI	CCNNGG	3 cut(s)	282, 709, 738
BseGI	GGATG	3 cut(s)	247, 336, 616
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	3 cut(s)	309, 490, 513
BseXI	GCAGC	2 cut(s)	671, 789
BsgI	GTGCAG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	681
BshFI	GGCC	1 cut(s)	395
BshNI	GGYRCC	1 cut(s)	705
BshVI	ATCGAT	2 cut(s)	554, 749
BsiEI	CGRYCG	1 cut(s)	681
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	4 cut(s)	142, 239, 266, 284
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	395
Bsp1286I	GDGCHC	3 cut(s)	104, 166, 412
Bsp143I	GATC	5 cut(s)	120, 202, 457, 551, 678
Bsp19I	CCATGG	1 cut(s)	709
BspACI	CCGC	3 cut(s)	4, 150, 755
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	286
BspDI	ATCGAT	2 cut(s)	554, 749
BspLI	GGNNCC	1 cut(s)	707
BspPI	GGATC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	782
BspT107I	GGYRCC	1 cut(s)	705
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	3 cut(s)	309, 490, 513
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	282, 709, 738
BssMI	GATC	5 cut(s)	120, 202, 457, 551, 678
BssT1I	CCWWGG	2 cut(s)	709, 738
Bst2UI	CCWGG	1 cut(s)	538
Bst4CI	ACNGT	5 cut(s)	35, 44, 112, 338, 662
Bst6I	CTCTTC	2 cut(s)	111, 782
BstC8I	GCNNGC	3 cut(s)	267, 300, 598
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	709
BstF5I	GGATG	3 cut(s)	247, 336, 616
BstH2I	RGCGCY	2 cut(s)	141, 148
BstHHI	GCGC	2 cut(s)	140, 147
BstKTI	GATC	5 cut(s)	123, 205, 460, 554, 681
BstMBI	GATC	5 cut(s)	120, 202, 457, 551, 678
BstMCI	CGRYCG	1 cut(s)	681
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 295
BstNI	CCWGG	1 cut(s)	538
BstSCI	CCNGG	4 cut(s)	140, 237, 282, 536
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	671, 789
BstX2I	RGATCY	1 cut(s)	120
BstXI	CCANNNNNNTGG	2 cut(s)	79, 178
BstYI	RGATCY	1 cut(s)	120
Bsu15I	ATCGAT	2 cut(s)	554, 749
BsuRI	GGCC	1 cut(s)	395
BsuTUI	ATCGAT	2 cut(s)	554, 749
BtgI	CCRYGG	1 cut(s)	709
BtsCI	GGATG	3 cut(s)	247, 336, 616
BtsIMutI	CAGTG	3 cut(s)	302, 520, 667
Cac8I	GCNNGC	3 cut(s)	267, 300, 598
CfoI	GCGC	2 cut(s)	140, 147
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	573
ClaI	ATCGAT	2 cut(s)	554, 749
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	3 cut(s)	365, 587, 706
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	2 cut(s)	590, 710
CviQI	GTAC	3 cut(s)	365, 587, 706
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	5 cut(s)	122, 204, 459, 553, 680
DpnII	GATC	5 cut(s)	120, 202, 457, 551, 678
Eam1104I	CTCTTC	2 cut(s)	111, 782
EarI	CTCTTC	2 cut(s)	111, 782
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	709, 738
Eco24I	GRGCYC	2 cut(s)	104, 166
Eco47I	GGWCC	1 cut(s)	573
EcoRII	CCWGG	1 cut(s)	536
EcoT14I	CCWWGG	2 cut(s)	709, 738
EcoT38I	GRGCYC	2 cut(s)	104, 166
ErhI	CCWWGG	2 cut(s)	709, 738
FaeI	CATG	2 cut(s)	593, 713
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	589, 709
Fnu4HI	GCNGC	2 cut(s)	685, 778
FokI	GGATG	3 cut(s)	254, 343, 623
FriOI	GRGCYC	2 cut(s)	104, 166
Fsp4HI	GCNGC	2 cut(s)	685, 778
GlaI	GCGC	2 cut(s)	139, 146
GluI	GCNGC	2 cut(s)	685, 778
HaeII	RGCGCY	2 cut(s)	141, 148
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	4 cut(s)	142, 239, 266, 284
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	2 cut(s)	140, 147
Hin1II	CATG	2 cut(s)	593, 713
Hin6I	GCGC	2 cut(s)	138, 145
HinP1I	GCGC	2 cut(s)	138, 145
HinfI	GANTC	5 cut(s)	8, 245, 374, 746, 751
HpaII	CCGG	4 cut(s)	142, 239, 266, 284
HphI	GGTGA	2 cut(s)	160, 268
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	31, 423
Hpy188III	TCNNGA	3 cut(s)	206, 293, 724
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	100, 116
HpyAV	CCTTC	3 cut(s)	205, 406, 483
HpyCH4III	ACNGT	5 cut(s)	35, 44, 112, 338, 662
HpyCH4V	TGCA	4 cut(s)	302, 362, 596, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 295
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	593, 713
HspAI	GCGC	2 cut(s)	138, 145
KpnI	GGTACC	1 cut(s)	709
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	5 cut(s)	120, 202, 457, 551, 678
LguI	GCTCTTC	1 cut(s)	782
LmnI	GCTCC	2 cut(s)	152, 286
Lsp1109I	GCAGC	2 cut(s)	671, 789
LweI	GCATC	2 cut(s)	318, 583
MaeIII	GTNAC	2 cut(s)	256, 481
MalI	GATC	5 cut(s)	122, 204, 459, 553, 680
MboI	GATC	5 cut(s)	120, 202, 457, 551, 678
MboII	GAAGA	3 cut(s)	115, 128, 626
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	3 cut(s)	104, 166, 412
MluCI	AATT	5 cut(s)	66, 77, 217, 313, 655
MlyI	GAGTC	2 cut(s)	254, 368
MroNI	GCCGGC	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	2 cut(s)	20, 417
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	4 cut(s)	142, 239, 266, 284
MspR9I	CCNGG	4 cut(s)	142, 239, 284, 538
MvaI	CCWGG	1 cut(s)	538
MwoI	GCNNNNNNNGC	2 cut(s)	144, 295
NaeI	GCCGGC	1 cut(s)	267
NciI	CCSGG	3 cut(s)	142, 239, 284
NcoI	CCATGG	1 cut(s)	709
NdeII	GATC	5 cut(s)	120, 202, 457, 551, 678
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	593, 713
NlaIV	GGNNCC	1 cut(s)	707
NmuCI	GTSAC	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	782
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	8, 746, 751
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	686, 779
Ple19I	CGATCG	1 cut(s)	681
PleI	GAGTC	2 cut(s)	253, 368
PpsI	GAGTC	2 cut(s)	253, 368
Psp6I	CCWGG	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	1 cut(s)	707
PspPI	GGNCC	1 cut(s)	573
PsuI	RGATCY	1 cut(s)	120
PvuI	CGATCG	1 cut(s)	681
RsaI	GTAC	3 cut(s)	366, 588, 707
RsaNI	GTAC	3 cut(s)	365, 587, 706
RseI	CAYNNNNRTG	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	782
SaqAI	TTAA	2 cut(s)	20, 417
SatI	GCNGC	2 cut(s)	685, 778
Sau3AI	GATC	5 cut(s)	120, 202, 457, 551, 678
Sau96I	GGNCC	1 cut(s)	573
SchI	GAGTC	2 cut(s)	254, 368
ScrFI	CCNGG	4 cut(s)	142, 239, 284, 538
SduI	GDGCHC	3 cut(s)	104, 166, 412
SetI	ASST	8 cut(s)	29, 258, 291, 449, 588, 602, 647, 704
SfaNI	GCATC	2 cut(s)	318, 583
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	573
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	5 cut(s)	66, 77, 217, 313, 655
SsiI	CCGC	3 cut(s)	4, 150, 755
StyD4I	CCNGG	4 cut(s)	140, 237, 282, 536
StyI	CCWWGG	2 cut(s)	709, 738
TaaI	ACNGT	5 cut(s)	35, 44, 112, 338, 662
TaqI	TCGA	7 cut(s)	98, 114, 160, 412, 554, 677, 749
TasI	AATT	5 cut(s)	66, 77, 217, 313, 655
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	3 cut(s)	8, 746, 751
Tru1I	TTAA	2 cut(s)	20, 417
Tru9I	TTAA	2 cut(s)	20, 417
TscAI	CASTG	3 cut(s)	309, 520, 667
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	684, 777
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	347, 627
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	3 cut(s)	309, 520, 667
VpaK11BI	GGWCC	1 cut(s)	573
XapI	RAATTY	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.