Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Forward (+)

24207692 .. 24210286

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1154200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGATGGCCTCGAGTCCGCGAACGGTGGAGGAGATCTTCAAGGATTACAGTGCTCGGAGAACCGCCGTCGTCCGCGCTTTAACTTACGATGTGGATGAATTTTACGGACTCTGTGATCCAGAAAAGGAGAACTTGTGTCTGTATGGGCACCCGAATGAAACCTGGGAGGTGACGCTTCCAGCAGAAGAAGTCCCGCCGGAGCTTCCTGAGCCAGCTCTTGGGATCAATTTTGCGCGAGACGGTATGAACCGCAAGGACTGGCTTTCTCTGGTTGCTGTTCACAGTGATTCGTGGCTGCTCTCTGTAGCCTTCTATTTTGGAGCACGTCTTAACCGCAATGAGAGGAAACGCCTATTTAGCTTGATCAATGATCTGCCTACTGTCTTTGAAGTTGTTACGGAACGGAAACCTGTCAAAGAAAAGCCCAGCGTGGATAGTGGAAGCAAATCTCGAGGCAGCACAAAGAGATCCGGTGATGGACTAGTGAAAAGCACTCCTAAGCTACCTGACGAGAGCTTCGAGGAGGAGGAGGATGAACATAGCGAAACTCTCTGCGGTAGCTGTGGCGGAAATTACAATGCAGATGAATTTTGGATCGGCTGTGACATCTGCGAGAAATGGTTCCATGGAAAATGTGTTAAGATAACACCTGCGAAGGCCGAGAACATCAAGCAGTACAAATGCCCGTCTTGCAGCTTGAAAAGGGGCAGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

240

Amino Acids

27.07

Weight (kDa)

5.33

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	9 - 134	3.7e-70	Alfin
PHD	PF00628	186 - 232	1.7e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	661
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	221
AccII	CGCG	3 cut(s)	22, 78, 238
AciI	CCGC	8 cut(s)	20, 66, 76, 197, 253, 337, 558, 570
AclWI	GGATC	4 cut(s)	113, 233, 465, 605
AcsI	RAATTY	2 cut(s)	101, 590
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	43, 392, 703
AhlI	ACTAGT	1 cut(s)	484
AjiI	CACGTC	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	7 cut(s)	205, 218, 363, 505, 519, 564, 699
AluI	AGCT	7 cut(s)	205, 218, 363, 505, 519, 564, 699
Alw21I	GWGCWC	2 cut(s)	58, 328
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	4 cut(s)	113, 233, 465, 605
Ama87I	CYCGRG	2 cut(s)	13, 453
AoxI	GGCC	2 cut(s)	9, 660
ApeKI	GCWGC	3 cut(s)	298, 459, 696
ApoI	RAATTY	2 cut(s)	101, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
Asp700I	GAANNNNTTC	1 cut(s)	623
AspLEI	GCGC	2 cut(s)	80, 238
AsuHPI	GGTGA	2 cut(s)	184, 488
AvaI	CYCGRG	2 cut(s)	13, 453
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	58, 328
BbvI	GCAGC	3 cut(s)	285, 471, 708
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	234
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	661
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	3 cut(s)	299, 460, 697
BlsI	GCNGC	3 cut(s)	300, 461, 698
Bme1390I	CCNGG	1 cut(s)	166
BmeT110I	CYCGRG	2 cut(s)	13, 453
BmgBI	CACGTC	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	152, 626
BmrFI	CCNGG	1 cut(s)	166
BplI	GAGNNNNNCTC	1 cut(s)	28
Bpu10I	CCTNAGC	2 cut(s)	210, 501
BsaJI	CCNNGG	2 cut(s)	165, 628
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	165, 628
BseGI	GGATG	2 cut(s)	103, 541
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	4 cut(s)	47, 539, 542, 545
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	285, 471, 708
BseYI	CCCAGC	1 cut(s)	428
Bsh1236I	CGCG	3 cut(s)	22, 78, 238
BshFI	GGCC	2 cut(s)	11, 662
BshNI	GGYRCC	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	58, 328
BsiHKCI	CYCGRG	2 cut(s)	13, 453
BsiSI	CCGG	2 cut(s)	200, 474
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	234
BsmBI	CGTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	11, 662
BsoBI	CYCGRG	2 cut(s)	13, 453
Bsp1286I	GDGCHC	3 cut(s)	58, 153, 328
Bsp143I	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	8 cut(s)	20, 66, 76, 197, 253, 337, 558, 570
BspANI	GGCC	2 cut(s)	11, 662
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	3 cut(s)	22, 78, 238
BspLI	GGNNCC	2 cut(s)	152, 626
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	4 cut(s)	113, 233, 465, 605
BspT107I	GGYRCC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	165, 628
BssMI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	5 cut(s)	28, 53, 245, 287, 385
BstC8I	GCNNGC	2 cut(s)	216, 713
BstDEI	CTNAG	2 cut(s)	210, 501
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	2 cut(s)	103, 541
BstFNI	CGCG	3 cut(s)	22, 78, 238
BstHHI	GCGC	2 cut(s)	80, 238
BstKTI	GATC	7 cut(s)	39, 121, 228, 369, 376, 473, 600
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 360, 693
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	3 cut(s)	22, 78, 238
BstV1I	GCAGC	3 cut(s)	285, 471, 708
BstX2I	RGATCY	2 cut(s)	36, 470
BstYI	RGATCY	2 cut(s)	36, 470
BsuRI	GGCC	2 cut(s)	11, 662
BtgI	CCRYGG	1 cut(s)	628
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	2 cut(s)	103, 541
BtsIMutI	CAGTG	2 cut(s)	58, 292
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	2 cut(s)	216, 713
CfoI	GCGC	2 cut(s)	80, 238
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	1 cut(s)	629
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	2 cut(s)	210, 501
DpnI	GATC	7 cut(s)	38, 120, 227, 368, 375, 472, 599
DpnII	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
EciI	GGCGGA	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	628
Eco88I	CYCGRG	2 cut(s)	13, 453
EcoRII	CCWGG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	1 cut(s)	632
FaiI	YATR	4 cut(s)	147, 248, 543, 630
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	628
FauI	CCCGC	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	299, 460, 697
FokI	GGATG	2 cut(s)	110, 548
Fsp4HI	GCNGC	3 cut(s)	299, 460, 697
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	2 cut(s)	79, 237
GluI	GCNGC	3 cut(s)	299, 460, 697
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	11, 662
HapII	CCGG	2 cut(s)	200, 474
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	2 cut(s)	80, 238
Hin1II	CATG	1 cut(s)	632
Hin6I	GCGC	2 cut(s)	78, 236
HinP1I	GCGC	2 cut(s)	78, 236
HinfI	GANTC	3 cut(s)	16, 111, 290
HpaII	CCGG	2 cut(s)	200, 474
HphI	GGTGA	2 cut(s)	184, 488
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	3 cut(s)	122, 209, 453
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	322, 652
HpyCH4III	ACNGT	5 cut(s)	28, 53, 245, 287, 385
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	584, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 360, 693
HpyF3I	CTNAG	2 cut(s)	210, 501
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	632
HspAI	GCGC	2 cut(s)	78, 236
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
LmnI	GCTCC	2 cut(s)	202, 323
Lsp1109I	GCAGC	3 cut(s)	285, 471, 708
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	3 cut(s)	172, 397, 605
MalI	GATC	7 cut(s)	38, 120, 227, 368, 375, 472, 599
MboI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
MboII	GAAGA	2 cut(s)	31, 200
MflI	RGATCY	2 cut(s)	36, 470
MhlI	GDGCHC	3 cut(s)	58, 153, 328
MluCI	AATT	4 cut(s)	101, 229, 574, 590
MlyI	GAGTC	2 cut(s)	25, 105
MnlI	CCTC	9 cut(s)	22, 25, 163, 339, 449, 517, 520, 523, 526
MroXI	GAANNNNTTC	1 cut(s)	623
MseI	TTAA	3 cut(s)	83, 333, 642
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	2 cut(s)	200, 474
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	3 cut(s)	22, 78, 238
MwoI	GCNNNNNNNGC	3 cut(s)	211, 360, 693
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
NlaIII	CATG	1 cut(s)	632
NlaIV	GGNNCC	2 cut(s)	152, 626
NmeAIII	GCCGAG	1 cut(s)	688
NmuCI	GTSAC	2 cut(s)	172, 605
PaeR7I	CTCGAG	2 cut(s)	13, 453
PaqCI	CACCTGC	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PdmI	GAANNNNTTC	1 cut(s)	623
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	3 cut(s)	300, 461, 698
PleI	GAGTC	2 cut(s)	24, 105
PpsI	GAGTC	2 cut(s)	24, 105
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	152, 626
PspXI	VCTCGAGB	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	36, 470
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	83, 333, 642
SatI	GCNGC	3 cut(s)	299, 460, 697
Sau3AI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 597
SchI	GAGTC	2 cut(s)	25, 105
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	3 cut(s)	58, 153, 328
SfcI	CTRYAG	1 cut(s)	306
Sfr274I	CTCGAG	2 cut(s)	13, 453
SlaI	CTCGAG	2 cut(s)	13, 453
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	13, 453
SmoI	CTYRAG	2 cut(s)	13, 453
SpeI	ACTAGT	1 cut(s)	484
Sse9I	AATT	4 cut(s)	101, 229, 574, 590
SsiI	CCGC	8 cut(s)	20, 66, 76, 197, 253, 337, 558, 570
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	5 cut(s)	28, 53, 245, 287, 385
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	3 cut(s)	14, 454, 522
TasI	AATT	4 cut(s)	101, 229, 574, 590
TatI	WGTACW	1 cut(s)	678
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	83, 333, 642
Tru9I	TTAA	3 cut(s)	83, 333, 642
TscAI	CASTG	2 cut(s)	58, 292
TseFI	GTSAC	2 cut(s)	172, 605
TseI	GCWGC	3 cut(s)	298, 459, 696
Tsp45I	GTSAC	2 cut(s)	172, 605
TspDTI	ATGAA	5 cut(s)	114, 174, 263, 552, 603
TspGWI	ACGGA	3 cut(s)	123, 416, 421
TspRI	CASTG	2 cut(s)	58, 292
Van91I	CCANNNNNTGG	1 cut(s)	221
XapI	RAATTY	2 cut(s)	101, 590
XhoI	CTCGAG	2 cut(s)	13, 453
XmnI	GAANNNNTTC	1 cut(s)	623
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.