Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Reverse (-)

1676889 .. 1679107

Gene Structure 2219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCCGCTGAGTCTTCTAACCCTCGCACCGTCGAAGAGATCTTCAAGGATTTTAGCGGTCGTCGCTCCGGTTTTCTTCGAGCTCTCTCCGTAGATGTTGACAAGTTCTACTCTTTATGCGATCCGGAAATGGAGAATCTGTGTTTGTACGGACACCCGAATGGGACATGGGAAGTGAATCTTCCAGCTGAGGAAGTGCCTCCGGAGCTACCTGAGCCAGCTCTTGGAATCAATTTCGCTAGAGATGGTATGCAGCGTAAAGATTGGCTCTCTTTAGTTGCTGTCCACAGTGATTGTTGGTTACTCTCTGTTTCTTCTTACTTCGGCGCTCGTCTTAATCGCAATGAGAGGAAACGTCTATTTAGTCTGATCAACGATCTCCCAACTCTCTTTGAAGTAGTGACGGGTAGGAAACCCATCAAAGACGGTAAACCAAGCATGGATCTCGGAAGCAAATCCAGAAACGGCGTAAAGAGATCAATTGAAGGGCAGACAAAGAGCACGCCGAAACTAATGGAAGAGAGCTATGAAGATGAAGACGATGAGCATGGAGACACACTCTGTGGAAGTTGTGGAGGAAACTACACAAACGACGAGTTCTGGATATGTTGTGATGTGTGTGAACGTTGGTACCATGGGAAGTGTGTGAAGATAACACCAGCCAAAGCAGAGAGCATCAAGCAATACAAATGCCCTTCTTGCTGCACTAAGAAAGGAAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

241

Amino Acids

27.22

Weight (kDa)

5.71

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	10 - 135	1e-66	Alfin
PHD	PF00628	188 - 234	2.1e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	630
AccB1I	GGYRCC	1 cut(s)	630
AccB7I	CCANNNNNTGG	1 cut(s)	224
AccIII	TCCGGA	2 cut(s)	124, 202
AciI	CCGC	2 cut(s)	6, 57
AclI	AACGTT	1 cut(s)	625
AclWI	GGATC	2 cut(s)	116, 450
AcoI	YGGCCR	1 cut(s)	3
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	2 cut(s)	149, 632
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	3 cut(s)	46, 395, 485
AluBI	AGCT	5 cut(s)	83, 188, 208, 221, 525
AluI	AGCT	5 cut(s)	83, 188, 208, 221, 525
Alw21I	GWGCWC	2 cut(s)	85, 503
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	2 cut(s)	116, 450
Aor13HI	TCCGGA	2 cut(s)	124, 202
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	253, 702
Asp718I	GGTACC	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	329
BaeI	ACNNNNGTAYC	2 cut(s)	614, 647
BanI	GGYRCC	1 cut(s)	630
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	2 cut(s)	6, 543
Bbv12I	GWGCWC	2 cut(s)	85, 503
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	265, 689
BccI	CCATC	2 cut(s)	239, 425
BceAI	ACGGC	1 cut(s)	481
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BclI	TGATCA	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	330
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	3 cut(s)	6, 254, 703
BlsI	GCNGC	3 cut(s)	7, 255, 704
BmiI	GGNNCC	1 cut(s)	632
BmsI	GCATC	1 cut(s)	684
BpiI	GAAGAC	2 cut(s)	6, 543
BplI	GAGNNNNNCTC	2 cut(s)	543, 575
Bpu10I	CCTNAGC	2 cut(s)	189, 213
BsaJI	CCNNGG	1 cut(s)	634
BsaWI	WCCGGW	3 cut(s)	68, 124, 202
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	349
BseAI	TCCGGA	2 cut(s)	124, 202
BseDI	CCNNGG	1 cut(s)	634
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	180, 204
BseXI	GCAGC	2 cut(s)	265, 689
BsgI	GTGCAG	1 cut(s)	688
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	630
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	2 cut(s)	85, 503
BsiSI	CCGG	3 cut(s)	69, 125, 203
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	85, 503
Bsp13I	TCCGGA	2 cut(s)	124, 202
Bsp143I	GATC	6 cut(s)	39, 121, 369, 376, 442, 476
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	2 cut(s)	6, 57
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	181, 205
BspEI	TCCGGA	2 cut(s)	124, 202
BspLI	GGNNCC	1 cut(s)	632
BspPI	GGATC	2 cut(s)	116, 450
BspT107I	GGYRCC	1 cut(s)	630
BsrDI	GCAATG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	6 cut(s)	39, 121, 369, 376, 442, 476
BssT1I	CCWWGG	1 cut(s)	634
Bst4CI	ACNGT	4 cut(s)	31, 290, 428, 723
Bst6I	CTCTTC	2 cut(s)	30, 513
BstC8I	GCNNGC	2 cut(s)	219, 503
BstDEI	CTNAG	4 cut(s)	9, 189, 213, 708
BstDSI	CCRYGG	1 cut(s)	634
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	6 cut(s)	42, 124, 372, 379, 445, 479
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	6 cut(s)	39, 121, 369, 376, 442, 476
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 205, 214, 699
BstV1I	GCAGC	2 cut(s)	265, 689
BstV2I	GAAGAC	2 cut(s)	6, 543
BstX2I	RGATCY	2 cut(s)	39, 442
BstYI	RGATCY	2 cut(s)	39, 442
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	634
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	219, 503
CfoI	GCGC	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	148, 631
CspCI	CAANNNNNGTGG	2 cut(s)	275, 310
CviAII	CATG	4 cut(s)	168, 439, 548, 635
CviJI	RGCY	9 cut(s)	5, 83, 188, 208, 217, 221, 268, 525, 662
CviKI_1	RGCY	9 cut(s)	5, 83, 188, 208, 217, 221, 268, 525, 662
CviQI	GTAC	2 cut(s)	148, 631
DdeI	CTNAG	4 cut(s)	9, 189, 213, 708
DpnI	GATC	6 cut(s)	41, 123, 371, 378, 444, 478
DpnII	GATC	6 cut(s)	39, 121, 369, 376, 442, 476
DraIII	CACNNNGTG	1 cut(s)	563
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	30, 513
EarI	CTCTTC	2 cut(s)	30, 513
Ecl136II	GAGCTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	4 cut(s)	171, 442, 551, 638
FaiI	YATR	8 cut(s)	118, 169, 251, 440, 528, 549, 607, 636
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	4 cut(s)	167, 438, 547, 634
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	6, 254, 703
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	3 cut(s)	6, 254, 703
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	3 cut(s)	6, 254, 703
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	69, 125, 203
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	4 cut(s)	171, 442, 551, 638
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	11, 136, 178, 228
HpaII	CCGG	3 cut(s)	69, 125, 203
Hpy166II	GTNNAC	4 cut(s)	100, 286, 431, 623
Hpy188I	TCNGA	2 cut(s)	369, 449
Hpy188III	TCNNGA	4 cut(s)	125, 203, 459, 601
Hpy8I	GTNNAC	4 cut(s)	100, 286, 431, 623
Hpy99I	CGWCG	3 cut(s)	35, 66, 596
HpyAV	CCTTC	2 cut(s)	479, 705
HpyCH4III	ACNGT	4 cut(s)	31, 290, 428, 723
HpyCH4IV	ACGT	2 cut(s)	355, 625
HpyCH4V	TGCA	2 cut(s)	253, 705
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 205, 214, 699
HpyF3I	CTNAG	4 cut(s)	9, 189, 213, 708
HpySE526I	ACGT	2 cut(s)	355, 625
Hsp92II	CATG	4 cut(s)	171, 442, 551, 638
HspAI	GCGC	1 cut(s)	327
Kpn2I	TCCGGA	2 cut(s)	124, 202
KpnI	GGTACC	1 cut(s)	634
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	6 cut(s)	39, 121, 369, 376, 442, 476
LmnI	GCTCC	2 cut(s)	71, 205
LpnPI	CCDG	9 cut(s)	82, 138, 198, 216, 225, 231, 472, 586, 672
Lsp1109I	GCAGC	2 cut(s)	265, 689
LweI	GCATC	1 cut(s)	684
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	355, 625
MaeIII	GTNAC	2 cut(s)	300, 400
MalI	GATC	6 cut(s)	41, 123, 371, 378, 444, 478
MboI	GATC	6 cut(s)	39, 121, 369, 376, 442, 476
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	2 cut(s)	39, 442
MhlI	GDGCHC	2 cut(s)	85, 503
MluCI	AATT	2 cut(s)	232, 480
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	5 cut(s)	33, 184, 210, 342, 569
MroI	TCCGGA	2 cut(s)	124, 202
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	2 cut(s)	8, 188
MspI	CCGG	3 cut(s)	69, 125, 203
MunI	CAATTG	1 cut(s)	480
MwoI	GCNNNNNNNGC	4 cut(s)	63, 205, 214, 699
NcoI	CCATGG	1 cut(s)	634
NdeII	GATC	6 cut(s)	39, 121, 369, 376, 442, 476
NlaIII	CATG	4 cut(s)	171, 442, 551, 638
NlaIV	GGNNCC	1 cut(s)	632
NmuCI	GTSAC	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	136, 178, 228
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	7, 255, 704
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	85
Psp1406I	AACGTT	1 cut(s)	625
PspN4I	GGNNCC	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	39, 442
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	149, 632
RsaNI	GTAC	2 cut(s)	148, 631
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	3 cut(s)	6, 254, 703
Sau3AI	GATC	6 cut(s)	39, 121, 369, 376, 442, 476
SchI	GAGTC	1 cut(s)	20
SduI	GDGCHC	2 cut(s)	85, 503
SetI	ASST	8 cut(s)	85, 190, 210, 214, 223, 358, 527, 628
SfaNI	GCATC	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	232, 480
SsiI	CCGC	2 cut(s)	6, 57
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	4 cut(s)	31, 290, 428, 723
TaiI	ACGT	2 cut(s)	358, 628
TaqI	TCGA	2 cut(s)	33, 79
TasI	AATT	2 cut(s)	232, 480
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	136, 178, 228
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	2 cut(s)	253, 702
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	543, 549
TspGWI	ACGGA	2 cut(s)	79, 165
TspRI	CASTG	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	224
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.