Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Reverse (-)

6815295 .. 6817979

Gene Structure 2685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGTATATTAATTAGATTCTCTCATCTACGGAAAACTAGAAGAGAGAGAGAGAGAGAGAGAGAGTGGGCTTTATCAAGTATCATCAACCAACGACCTAAACACTTTTATTCATGCATCTGTCTCCTCCTCCGATCCGTCTCACTCTTCCTTCCTTCTAATTCGAATTGGTCCCAATTGAGTCACCAATTCAGATTCCGAAACGCACCGTTTAGATCCCCCATGGAGATGGCCACCAGTCCCCGTACCGTCGAGGAGATCTTCAAGGATTACGGTGCCCGAAGAGCCGCCGTCGTCCGTGCTTTGACTTACGATGTCGATGAATTTTACGGACTCTGTGATCCAGAAAAGGAGAATTTGTGTCTGTATGGACACCCAAATGAGACCTGGGAAGTGACACTGCCGGCAGAGGAAGTCCCACCGGAGCTTCCCGAGCCAGCACTTGGGATCAATTTTGCAAGGGATGGCATGAACCGCAAGGACTGGCTTTCCCTGGTCGCTGTTCATAGTGATTCTTGGCTGCTTTCTGTCGCTTTTTATTTTGGAGCGCGGCTTAATCGTAGTGAGAGGAAACGACTTTTTAGCTTGATCAATGATCTCCCTACCGTCTTTGAAGTTGTGACGGATAGGAAGCCTGCTAAAGACAAGCCTAGTGTGGATAGCGGAAGCAAATCCAGAGGAAGCACAAAGAGATCTGGTGATGGCATGATGAAAAGCAATCCTAAGCTTGCTGATGAGAGTTTTGAGGAGGAGGATGATGAACATAGTGAAACTCTCTGTGGGAGCTGTGGCGGAAACTACAATGCAGATGAATTTTGGATTGGCTGCGACATCTGCGAAAGATGGTTCCATGGAAAATGCGTGAAGATAACACCTGCCAAGGCCGAGAACATCAAGCAATACAAATGCCCATCTTGCAGCTTGAAAAGGAGCAGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

314

Amino Acids

36.0

Weight (kDa)

8.24

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	83 - 208	5.1e-69	Alfin
PHD	PF00628	260 - 306	1.9e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	883
Acc36I	ACCTGC	1 cut(s)	883
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccII	CGCG	1 cut(s)	550
AciI	CCGC	5 cut(s)	288, 475, 550, 663, 792
AclWI	GGATC	4 cut(s)	129, 210, 335, 455
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	3 cut(s)	323, 355, 812
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	265, 614, 925
AjnI	CCWGG	2 cut(s)	386, 492
AjuI	GAANNNNNNNTTGG	2 cut(s)	804, 836
AluBI	AGCT	5 cut(s)	427, 585, 727, 786, 921
AluI	AGCT	5 cut(s)	427, 585, 727, 786, 921
Alw26I	GTCTC	3 cut(s)	128, 145, 377
AlwI	GGATC	4 cut(s)	129, 210, 335, 455
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	2 cut(s)	231, 882
ApeKI	GCWGC	3 cut(s)	520, 825, 918
ApoI	RAATTY	3 cut(s)	323, 355, 812
AseI	ATTAAT	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	176, 710
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	280
BalI	TGGCCA	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	275
BbvI	GCAGC	3 cut(s)	507, 812, 930
BccI	CCATC	5 cut(s)	223, 458, 695, 837, 919
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	388, 494
BclI	TGATCA	1 cut(s)	588
BcoDI	GTCTC	3 cut(s)	128, 145, 377
BfaI	CTAG	2 cut(s)	39, 651
BfuAI	ACCTGC	1 cut(s)	883
BglII	AGATCT	2 cut(s)	258, 692
BisI	GCNGC	5 cut(s)	288, 521, 551, 826, 919
BlsI	GCNGC	5 cut(s)	289, 522, 552, 827, 920
Bme1390I	CCNGG	2 cut(s)	388, 494
Bme18I	GGWCC	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	3 cut(s)	173, 277, 848
BmrFI	CCNGG	2 cut(s)	388, 494
BmsI	GCATC	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	723
Bpu14I	TTCGAA	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	5 cut(s)	222, 387, 492, 850, 879
BsaWI	WCCGGW	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	237, 488
BseBI	CCWGG	2 cut(s)	388, 494
BseDI	CCNNGG	5 cut(s)	222, 387, 492, 850, 879
BseGI	GGATG	2 cut(s)	469, 760
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	237, 488
BseRI	GAGGAG	5 cut(s)	116, 119, 269, 761, 764
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	3 cut(s)	507, 812, 930
Bsh1236I	CGCG	1 cut(s)	550
BshFI	GGCC	2 cut(s)	233, 884
BshNI	GGYRCC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	404, 422
BslFI	GGGAC	3 cut(s)	157, 225, 401
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	3 cut(s)	128, 145, 377
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	3 cut(s)	157, 225, 401
BsnI	GGCC	2 cut(s)	233, 884
Bso31I	GGTCTC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	8 cut(s)	134, 215, 258, 340, 447, 588, 595, 692
Bsp19I	CCATGG	2 cut(s)	222, 850
BspACI	CCGC	5 cut(s)	288, 475, 550, 663, 792
BspANI	GGCC	2 cut(s)	233, 884
BspFNI	CGCG	1 cut(s)	550
BspLI	GGNNCC	3 cut(s)	173, 277, 848
BspMI	ACCTGC	1 cut(s)	883
BspPI	GGATC	4 cut(s)	129, 210, 335, 455
BspQI	GCTCTTC	1 cut(s)	277
BspT104I	TTCGAA	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	237, 488
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	5 cut(s)	222, 387, 492, 850, 879
BssMI	GATC	8 cut(s)	134, 215, 258, 340, 447, 588, 595, 692
BssT1I	CCWWGG	3 cut(s)	222, 850, 879
Bst2UI	CCWGG	2 cut(s)	388, 494
Bst4CI	ACNGT	4 cut(s)	210, 250, 275, 607
Bst6I	CTCTTC	3 cut(s)	37, 152, 277
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	5 cut(s)	405, 438, 636, 729, 935
BstDEI	CTNAG	1 cut(s)	723
BstDSI	CCRYGG	2 cut(s)	222, 850
BstF5I	GGATG	2 cut(s)	469, 760
BstFNI	CGCG	1 cut(s)	550
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	8 cut(s)	137, 218, 261, 343, 450, 591, 598, 695
BstMAI	GTCTC	3 cut(s)	128, 145, 377
BstMBI	GATC	8 cut(s)	134, 215, 258, 340, 447, 588, 595, 692
BstMWI	GCNNNNNNNGC	5 cut(s)	284, 433, 474, 834, 915
BstNI	CCWGG	2 cut(s)	388, 494
BstSCI	CCNGG	2 cut(s)	386, 492
BstSLI	GKGCMC	1 cut(s)	280
BstUI	CGCG	1 cut(s)	550
BstV1I	GCAGC	3 cut(s)	507, 812, 930
BstX2I	RGATCY	3 cut(s)	215, 258, 692
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	3 cut(s)	215, 258, 692
BsuRI	GGCC	2 cut(s)	233, 884
BtgI	CCRYGG	2 cut(s)	222, 850
BtsCI	GGATG	2 cut(s)	469, 760
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	398
BveI	ACCTGC	1 cut(s)	883
Cac8I	GCNNGC	5 cut(s)	405, 438, 636, 729, 935
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	5 cut(s)	114, 223, 469, 706, 851
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	723
DpnI	GATC	8 cut(s)	136, 217, 260, 342, 449, 590, 597, 694
DpnII	GATC	8 cut(s)	134, 215, 258, 340, 447, 588, 595, 692
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	3 cut(s)	37, 152, 277
EarI	CTCTTC	3 cut(s)	37, 152, 277
EciI	GGCGGA	1 cut(s)	807
Eco130I	CCWWGG	3 cut(s)	222, 850, 879
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	386, 492
EcoT14I	CCWWGG	3 cut(s)	222, 850, 879
EcoT22I	ATGCAT	1 cut(s)	119
ErhI	CCWWGG	3 cut(s)	222, 850, 879
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	5 cut(s)	117, 226, 472, 709, 854
FaiI	YATR	9 cut(s)	8, 115, 224, 369, 470, 507, 707, 765, 852
FaqI	GGGAC	3 cut(s)	157, 225, 401
FatI	CATG	5 cut(s)	113, 222, 468, 705, 850
FbaI	TGATCA	1 cut(s)	588
Fnu4HI	GCNGC	5 cut(s)	288, 521, 551, 826, 919
FokI	GGATG	2 cut(s)	476, 767
Fsp4HI	GCNGC	5 cut(s)	288, 521, 551, 826, 919
FspBI	CTAG	2 cut(s)	39, 651
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	5 cut(s)	288, 521, 551, 826, 919
HaeIII	GGCC	2 cut(s)	233, 884
HapII	CCGG	2 cut(s)	404, 422
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	5 cut(s)	117, 226, 472, 709, 854
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	5 cut(s)	18, 181, 195, 333, 512
HpaII	CCGG	2 cut(s)	404, 422
HphI	GGTGA	2 cut(s)	176, 710
Hpy188I	TCNGA	3 cut(s)	134, 194, 200
Hpy188III	TCNNGA	3 cut(s)	344, 431, 675
Hpy99I	CGWCG	2 cut(s)	254, 296
HpyAV	CCTTC	2 cut(s)	161, 165
HpyCH4III	ACNGT	4 cut(s)	210, 250, 275, 607
HpyCH4V	TGCA	4 cut(s)	117, 458, 806, 918
HpyF10VI	GCNNNNNNNGC	5 cut(s)	284, 433, 474, 834, 915
HpyF3I	CTNAG	1 cut(s)	723
Hsp92II	CATG	5 cut(s)	117, 226, 472, 709, 854
HspAI	GCGC	1 cut(s)	548
KroI	GCCGGC	1 cut(s)	403
KroNI	GCCGGC	1 cut(s)	405
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	8 cut(s)	134, 215, 258, 340, 447, 588, 595, 692
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	4 cut(s)	424, 545, 783, 930
Lsp1109I	GCAGC	3 cut(s)	507, 812, 930
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	2 cut(s)	39, 651
MaeIII	GTNAC	3 cut(s)	182, 394, 619
MalI	GATC	8 cut(s)	136, 217, 260, 342, 449, 590, 597, 694
MboI	GATC	8 cut(s)	134, 215, 258, 340, 447, 588, 595, 692
MboII	GAAGA	5 cut(s)	54, 139, 253, 294, 877
MfeI	CAATTG	1 cut(s)	176
MflI	RGATCY	3 cut(s)	215, 258, 692
MhlI	GDGCHC	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	9 cut(s)	12, 160, 166, 176, 188, 323, 355, 451, 812
MluNI	TGGCCA	1 cut(s)	233
MlyI	GAGTC	2 cut(s)	190, 327
MnlI	CCTC	9 cut(s)	137, 140, 247, 403, 561, 671, 739, 742, 745
Mox20I	TGGCCA	1 cut(s)	233
Mph1103I	ATGCAT	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	2 cut(s)	11, 555
MslI	CAYNNNNRTG	2 cut(s)	227, 378
Msp20I	TGGCCA	1 cut(s)	233
MspI	CCGG	2 cut(s)	404, 422
MspR9I	CCNGG	2 cut(s)	388, 494
MunI	CAATTG	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	388, 494
MvnI	CGCG	1 cut(s)	550
MwoI	GCNNNNNNNGC	5 cut(s)	284, 433, 474, 834, 915
NaeI	GCCGGC	1 cut(s)	405
NcoI	CCATGG	2 cut(s)	222, 850
NdeII	GATC	8 cut(s)	134, 215, 258, 340, 447, 588, 595, 692
NgoMIV	GCCGGC	1 cut(s)	403
NlaIII	CATG	5 cut(s)	117, 226, 472, 709, 854
NlaIV	GGNNCC	3 cut(s)	173, 277, 848
NmeAIII	GCCGAG	1 cut(s)	910
NmuCI	GTSAC	3 cut(s)	182, 394, 619
NsiI	ATGCAT	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	164
PaqCI	CACCTGC	1 cut(s)	883
PciSI	GCTCTTC	1 cut(s)	277
PdiI	GCCGGC	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	18, 195, 512
PflMI	CCANNNNNTGG	1 cut(s)	443
PkrI	GCNGC	5 cut(s)	289, 522, 552, 827, 920
PleI	GAGTC	2 cut(s)	189, 327
PpsI	GAGTC	2 cut(s)	189, 327
PshBI	ATTAAT	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	386, 492
PspGI	CCWGG	2 cut(s)	386, 492
PspN4I	GGNNCC	3 cut(s)	173, 277, 848
PspPI	GGNCC	1 cut(s)	171
PsuI	RGATCY	3 cut(s)	215, 258, 692
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
RseI	CAYNNNNRTG	2 cut(s)	227, 378
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	11, 555
SatI	GCNGC	5 cut(s)	288, 521, 551, 826, 919
Sau3AI	GATC	8 cut(s)	134, 215, 258, 340, 447, 588, 595, 692
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	2 cut(s)	190, 327
ScrFI	CCNGG	2 cut(s)	388, 494
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	8 cut(s)	100, 389, 429, 587, 729, 788, 877, 923
SfaNI	GCATC	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	2 cut(s)	227, 378
Sse9I	AATT	9 cut(s)	12, 160, 166, 176, 188, 323, 355, 451, 812
SsiI	CCGC	5 cut(s)	288, 475, 550, 663, 792
SspMI	CTAG	2 cut(s)	39, 651
StyD4I	CCNGG	2 cut(s)	386, 492
StyI	CCWWGG	3 cut(s)	222, 850, 879
TaaI	ACNGT	4 cut(s)	210, 250, 275, 607
TaqI	TCGA	3 cut(s)	164, 252, 318
TasI	AATT	9 cut(s)	12, 160, 166, 176, 188, 323, 355, 451, 812
TauI	GCSGC	2 cut(s)	290, 553
TfiI	GAWTC	3 cut(s)	18, 195, 512
Tru1I	TTAA	2 cut(s)	11, 555
Tru9I	TTAA	2 cut(s)	11, 555
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	3 cut(s)	182, 394, 619
TseI	GCWGC	3 cut(s)	520, 825, 918
Tsp45I	GTSAC	3 cut(s)	182, 394, 619
TspDTI	ATGAA	7 cut(s)	102, 336, 485, 494, 725, 774, 825
TspGWI	ACGGA	5 cut(s)	46, 127, 287, 345, 638
TspRI	CASTG	1 cut(s)	405
Van91I	CCANNNNNTGG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	171
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	3 cut(s)	323, 355, 812
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XspI	CTAG	2 cut(s)	39, 651
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.