Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Forward (+)

24773348 .. 24775892

Gene Structure 2545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1167600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGATGGCCTCGAGTCCGCGAACGGTGGAGGAGATCTTCAAGGATTACAGTGCTCGGAGAACCGCCGTTGTCCGCGCTTTAACTTACGATGTCGATGAATTTTACGGACTCTGTGATCCAGAGAAGGAGAATTTGTGTCTGTATGGGCACCCGAATGAAACCTGGGAGGTGACACTTCCGGCGGAAGAAGTCCCACCAGAGCTTCCTGAGCCAGCACTTGGGATCAATTTTGCAAGAGACGGCATGAACCGCAAGGACTGGCTCTCTCTGGTTGCTGTTCACAGTGATTCTTGGCTGCTCTCTGTCGCGTTCTATTTTGGAGCACGTCTTAACCGCAGTGAGAGGAAACGCCTATTTAGCTTGATCAATGATCTTCCTACTGTCTTTGAAGTTGTGACGGAACGGAAACCCGTCAAAGAAAAGCCCAGCGTGGATAGTGGAAGCAAATCTCGAGGCAGCACAAAGAGATCCGGTGATGGACTAGTGAAAAGCACTCCTAAGCTACCACCTGATGAGAGCTTCGAGGAGGATGATGATGAACATAGCGAAACTCTCTGCGGGAGCTGTGGCGGAAATTACAATGCAGATGAATTTTGGATCGGCTGTGACATCTGTGAGAAATGGTTCCACGGAAAATGTGTCAAGATAACACCTGCTAAGGCCGAGAACATCAAGCAATACAAATGCCCGTCTTGCAGCTTGAAAAGGGGCAGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

241

Amino Acids

27.11

Weight (kDa)

5.31

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	9 - 134	9e-70	Alfin
PHD	PF00628	187 - 233	1.7e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	664
Acc36I	ACCTGC	1 cut(s)	664
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	221
AccII	CGCG	3 cut(s)	22, 78, 311
AciI	CCGC	8 cut(s)	20, 66, 76, 185, 253, 337, 561, 573
AclWI	GGATC	4 cut(s)	113, 233, 465, 608
AcsI	RAATTY	3 cut(s)	101, 133, 593
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	43, 392, 706
AhlI	ACTAGT	1 cut(s)	484
AjiI	CACGTC	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	6 cut(s)	205, 363, 505, 522, 567, 702
AluI	AGCT	6 cut(s)	205, 363, 505, 522, 567, 702
Alw21I	GWGCWC	2 cut(s)	58, 328
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	4 cut(s)	113, 233, 465, 608
Ama87I	CYCGRG	2 cut(s)	13, 453
AoxI	GGCC	2 cut(s)	9, 663
ApeKI	GCWGC	3 cut(s)	298, 459, 699
ApoI	RAATTY	3 cut(s)	101, 133, 593
Asp700I	GAANNNNTTC	1 cut(s)	626
AspLEI	GCGC	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	184, 488
AvaI	CYCGRG	2 cut(s)	13, 453
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	58, 328
BbvI	GCAGC	3 cut(s)	285, 471, 711
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	2 cut(s)	53, 259
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	234
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	664
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	3 cut(s)	299, 460, 700
BlsI	GCNGC	3 cut(s)	300, 461, 701
Bme1390I	CCNGG	1 cut(s)	166
BmeT110I	CYCGRG	2 cut(s)	13, 453
BmgBI	CACGTC	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	152, 629
BmrFI	CCNGG	1 cut(s)	166
BplI	GAGNNNNNCTC	1 cut(s)	28
Bpu10I	CCTNAGC	3 cut(s)	210, 501, 660
BsaJI	CCNNGG	2 cut(s)	165, 631
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	165, 631
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	2 cut(s)	47, 542
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	285, 471, 711
BseYI	CCCAGC	1 cut(s)	428
Bsh1236I	CGCG	3 cut(s)	22, 78, 311
BshFI	GGCC	2 cut(s)	11, 665
BshNI	GGYRCC	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	58, 328
BsiHKCI	CYCGRG	2 cut(s)	13, 453
BsiSI	CCGG	2 cut(s)	182, 474
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	234
BsmBI	CGTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	11, 665
BsoBI	CYCGRG	2 cut(s)	13, 453
Bsp1286I	GDGCHC	3 cut(s)	58, 153, 328
Bsp143I	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 600
BspACI	CCGC	8 cut(s)	20, 66, 76, 185, 253, 337, 561, 573
BspANI	GGCC	2 cut(s)	11, 665
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	3 cut(s)	22, 78, 311
BspLI	GGNNCC	2 cut(s)	152, 629
BspMI	ACCTGC	1 cut(s)	664
BspPI	GGATC	4 cut(s)	113, 233, 465, 608
BspT107I	GGYRCC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	165, 631
BssMI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 600
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	4 cut(s)	28, 53, 287, 385
BstC8I	GCNNGC	2 cut(s)	216, 716
BstDEI	CTNAG	3 cut(s)	210, 501, 660
BstDSI	CCRYGG	1 cut(s)	631
BstF5I	GGATG	1 cut(s)	538
BstFNI	CGCG	3 cut(s)	22, 78, 311
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	7 cut(s)	39, 121, 228, 369, 376, 473, 603
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 600
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 252, 360, 696
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	3 cut(s)	22, 78, 311
BstV1I	GCAGC	3 cut(s)	285, 471, 711
BstX2I	RGATCY	2 cut(s)	36, 470
BstYI	RGATCY	2 cut(s)	36, 470
BsuRI	GGCC	2 cut(s)	11, 665
BtgI	CCRYGG	1 cut(s)	631
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	3 cut(s)	58, 292, 346
BveI	ACCTGC	1 cut(s)	664
Cac8I	GCNNGC	2 cut(s)	216, 716
CfoI	GCGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	210, 501, 660
DpnI	GATC	7 cut(s)	38, 120, 227, 368, 375, 472, 602
DpnII	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 600
EciI	GGCGGA	2 cut(s)	200, 588
Eco88I	CYCGRG	2 cut(s)	13, 453
EcoRII	CCWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	1 cut(s)	250
FaiI	YATR	3 cut(s)	147, 248, 546
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	246
FauI	CCCGC	1 cut(s)	554
FbaI	TGATCA	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	299, 460, 700
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	3 cut(s)	299, 460, 700
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	299, 460, 700
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	11, 665
HapII	CCGG	2 cut(s)	182, 474
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	3 cut(s)	16, 111, 290
HpaII	CCGG	2 cut(s)	182, 474
HphI	GGTGA	2 cut(s)	184, 488
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	4 cut(s)	122, 209, 453, 646
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	4 cut(s)	28, 53, 287, 385
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	3 cut(s)	236, 587, 699
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 252, 360, 696
HpyF3I	CTNAG	3 cut(s)	210, 501, 660
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 600
LmnI	GCTCC	2 cut(s)	323, 564
Lsp1109I	GCAGC	3 cut(s)	285, 471, 711
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	3 cut(s)	172, 397, 608
MalI	GATC	7 cut(s)	38, 120, 227, 368, 375, 472, 602
MboI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 600
MboII	GAAGA	3 cut(s)	31, 200, 368
MflI	RGATCY	2 cut(s)	36, 470
MhlI	GDGCHC	3 cut(s)	58, 153, 328
MluCI	AATT	5 cut(s)	101, 133, 229, 577, 593
MlyI	GAGTC	2 cut(s)	25, 105
MnlI	CCTC	7 cut(s)	22, 25, 163, 339, 449, 520, 523
MroXI	GAANNNNTTC	1 cut(s)	626
MseI	TTAA	2 cut(s)	83, 333
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	2 cut(s)	182, 474
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	3 cut(s)	22, 78, 311
MwoI	GCNNNNNNNGC	4 cut(s)	211, 252, 360, 696
NdeII	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 600
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	2 cut(s)	152, 629
NmeAIII	GCCGAG	1 cut(s)	691
NmuCI	GTSAC	3 cut(s)	172, 397, 608
PaeR7I	CTCGAG	2 cut(s)	13, 453
PaqCI	CACCTGC	1 cut(s)	664
PdmI	GAANNNNTTC	1 cut(s)	626
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	3 cut(s)	300, 461, 701
PleI	GAGTC	2 cut(s)	24, 105
PpsI	GAGTC	2 cut(s)	24, 105
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	152, 629
PspXI	VCTCGAGB	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	36, 470
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	83, 333
SatI	GCNGC	3 cut(s)	299, 460, 700
Sau3AI	GATC	7 cut(s)	36, 118, 225, 366, 373, 470, 600
SchI	GAGTC	2 cut(s)	25, 105
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	3 cut(s)	58, 153, 328
Sfr274I	CTCGAG	2 cut(s)	13, 453
SlaI	CTCGAG	2 cut(s)	13, 453
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	13, 453
SmoI	CTYRAG	2 cut(s)	13, 453
SpeI	ACTAGT	1 cut(s)	484
Sse9I	AATT	5 cut(s)	101, 133, 229, 577, 593
SsiI	CCGC	8 cut(s)	20, 66, 76, 185, 253, 337, 561, 573
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	4 cut(s)	28, 53, 287, 385
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	4 cut(s)	14, 96, 454, 525
TasI	AATT	5 cut(s)	101, 133, 229, 577, 593
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	83, 333
Tru9I	TTAA	2 cut(s)	83, 333
TscAI	CASTG	3 cut(s)	58, 292, 346
TseFI	GTSAC	3 cut(s)	172, 397, 608
TseI	GCWGC	3 cut(s)	298, 459, 699
Tsp45I	GTSAC	3 cut(s)	172, 397, 608
TspDTI	ATGAA	5 cut(s)	114, 174, 263, 555, 606
TspGWI	ACGGA	4 cut(s)	123, 416, 421, 648
TspRI	CASTG	3 cut(s)	58, 292, 346
Van91I	CCANNNNNTGG	1 cut(s)	221
XapI	RAATTY	3 cut(s)	101, 133, 593
XhoI	CTCGAG	2 cut(s)	13, 453
XmnI	GAANNNNTTC	1 cut(s)	626
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.