Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Forward (+)

60300883 .. 60303489

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G032060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCATCTTCGAGCCCTCGCAGCGTCGAAGAGATCTTCAGAGACTACAGCGCTCGTCGCTCTGGCATCGTTCGCGCCCTTACCAACGATGTGGATGAATTCTATGCGCTTTGCGATCCAGAGAAGGAGAATTTGTGCTTGTATGGACACCCGGATGAGTCGTGGGAGCTTCCGGAGCCTGCGTTGGGGATTAATTTTGCGAGAGATGGGATGAACCGCCAAGATTGGCTGTCTTTGATTGCAGTGCATAGTGATTCTTGGTTGTTGTCTGTGTCTTTCTACTTTGGTGCTCGCCTTAACCGGAATGAGAGGAAGCGTCTATTTAGCTTGACAAATGATCTGCCAACTGTCTTTGAAGTCGTAACTGGAAGGAAGCCCGCTAGAGACAAACCCAGTGCAGATAGTGGAAGCAAATCCAGGAACAATGCAAAGAGATCAACTGATGGACCTATGAGGACCAATAGTACGTTGCTCGATGAAAATTACGTGGAGGATGGAGATGAGCATAGTGAAACTCTATGTGGAAGCTGTGGGGGAAATTACAGTGCTAATGAGTTTTGGATTGGCTGTGACATCTGTGAGAGATGGTACCATGGGAAGTGTGTGAAGATAACACCATCCAAGGCCGAGTATATCCAGCAGTACAAATGCCCTTCTTGCTCAAAGAAGGGAAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_2 Clp_N

Protein Analysis

226

Amino Acids

25.63

Weight (kDa)

5.88

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	8 - 122	1.5e-56	Alfin
PHD	PF00628	174 - 220	6.2e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	588
AccB1I	GGYRCC	1 cut(s)	588
AccII	CGCG	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	2 cut(s)	217, 378
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	98, 130
AcuI	CTGAAG	1 cut(s)	22
AfaI	GTAC	3 cut(s)	466, 590, 644
AfeI	AGCGCT	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	3 cut(s)	169, 327, 528
AluI	AGCT	3 cut(s)	169, 327, 528
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	36, 378
AlwI	GGATC	1 cut(s)	110
Aor13HI	TCCGGA	1 cut(s)	172
Aor51HI	AGCGCT	1 cut(s)	52
AoxI	GGCC	1 cut(s)	624
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	2 cut(s)	98, 130
AseI	ATTAAT	1 cut(s)	192
Asp718I	GGTACC	1 cut(s)	588
AspLEI	GCGC	3 cut(s)	53, 77, 109
AspS9I	GGNCC	2 cut(s)	446, 456
AsuC2I	CCSGG	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	446, 456
BanI	GGYRCC	1 cut(s)	588
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	6 cut(s)	13, 200, 437, 488, 579, 625
BciT130I	CCWGG	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	36, 378
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	54
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	152, 418
Bme18I	GGWCC	2 cut(s)	446, 456
BmgT120I	GGNCC	2 cut(s)	446, 456
BmiI	GGNNCC	2 cut(s)	177, 590
BmrFI	CCNGG	2 cut(s)	152, 418
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	487
BsaJI	CCNNGG	2 cut(s)	592, 621
BsaWI	WCCGGW	2 cut(s)	172, 300
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	370, 393
BseAI	TCCGGA	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	592, 621
BseGI	GGATG	5 cut(s)	100, 160, 216, 499, 617
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	370, 393
BseXI	GCAGC	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	626
BshNI	GGYRCC	1 cut(s)	588
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	3 cut(s)	152, 173, 301
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	36, 378
BsnI	GGCC	1 cut(s)	626
Bsp1286I	GDGCHC	2 cut(s)	17, 292
Bsp13I	TCCGGA	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	33, 115, 337, 434
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	2 cut(s)	217, 378
BspANI	GGCC	1 cut(s)	626
BspEI	TCCGGA	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	177, 590
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	588
BsrI	ACTGG	2 cut(s)	370, 393
BssECI	CCNNGG	2 cut(s)	592, 621
BssMI	GATC	4 cut(s)	33, 115, 337, 434
BssT1I	CCWWGG	2 cut(s)	592, 621
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	349, 545
Bst6I	CTCTTC	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	487
BstC8I	GCNNGC	3 cut(s)	180, 292, 378
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	5 cut(s)	100, 160, 216, 499, 617
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	3 cut(s)	53, 77, 109
BstKTI	GATC	4 cut(s)	36, 118, 340, 437
BstMAI	GTCTC	2 cut(s)	36, 378
BstMBI	GATC	4 cut(s)	33, 115, 337, 434
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 57, 72, 175, 657
BstNI	CCWGG	1 cut(s)	418
BstSCI	CCNGG	2 cut(s)	150, 416
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	626
BtgI	CCRYGG	1 cut(s)	592
BtsCI	GGATG	5 cut(s)	100, 160, 216, 499, 617
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	3 cut(s)	249, 400, 550
Cac8I	GCNNGC	3 cut(s)	180, 292, 378
CfoI	GCGC	3 cut(s)	53, 77, 109
Cfr13I	GGNCC	2 cut(s)	446, 456
CseI	GACGC	2 cut(s)	13, 305
Csp6I	GTAC	3 cut(s)	465, 589, 643
CviAII	CATG	1 cut(s)	593
CviJI	RGCY	9 cut(s)	15, 169, 178, 229, 327, 376, 528, 567, 626
CviKI_1	RGCY	9 cut(s)	15, 169, 178, 229, 327, 376, 528, 567, 626
CviQI	GTAC	3 cut(s)	465, 589, 643
DpnI	GATC	4 cut(s)	35, 117, 339, 436
DpnII	GATC	4 cut(s)	33, 115, 337, 434
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	592, 621
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	446, 456
Eco47III	AGCGCT	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	416
EcoT14I	CCWWGG	2 cut(s)	592, 621
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	2 cut(s)	592, 621
FaeI	CATG	1 cut(s)	596
FaiI	YATR	8 cut(s)	105, 144, 249, 452, 507, 520, 594, 633
FatI	CATG	1 cut(s)	592
FauI	CCCGC	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	5 cut(s)	107, 167, 223, 506, 604
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	3 cut(s)	52, 76, 108
GluI	GCNGC	1 cut(s)	22
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	626
HapII	CCGG	3 cut(s)	152, 173, 301
HgaI	GACGC	2 cut(s)	13, 305
HhaI	GCGC	3 cut(s)	53, 77, 109
Hin1II	CATG	1 cut(s)	596
Hin6I	GCGC	3 cut(s)	51, 75, 107
HinP1I	GCGC	3 cut(s)	51, 75, 107
HinfI	GANTC	2 cut(s)	158, 254
HpaII	CCGG	3 cut(s)	152, 173, 301
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	2 cut(s)	119, 173
Hpy99I	CGWCG	2 cut(s)	29, 60
HpyAV	CCTTC	5 cut(s)	118, 363, 661, 663, 666
HpyCH4III	ACNGT	2 cut(s)	349, 545
HpyCH4IV	ACGT	2 cut(s)	467, 486
HpyCH4V	TGCA	4 cut(s)	242, 247, 398, 428
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 57, 72, 175, 657
HpySE526I	ACGT	2 cut(s)	467, 486
Hsp92II	CATG	1 cut(s)	596
HspAI	GCGC	3 cut(s)	51, 75, 107
Kpn2I	TCCGGA	1 cut(s)	172
KpnI	GGTACC	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	33, 115, 337, 434
LmnI	GCTCC	2 cut(s)	166, 175
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	2 cut(s)	467, 486
MaeIII	GTNAC	2 cut(s)	361, 569
MalI	GATC	4 cut(s)	35, 117, 339, 436
MboI	GATC	4 cut(s)	33, 115, 337, 434
MboII	GAAGA	3 cut(s)	28, 41, 619
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	17, 292
MluCI	AATT	5 cut(s)	98, 130, 193, 481, 538
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	4 cut(s)	27, 303, 447, 484
MroI	TCCGGA	1 cut(s)	172
MseI	TTAA	2 cut(s)	192, 297
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	3 cut(s)	152, 173, 301
MspR9I	CCNGG	2 cut(s)	152, 418
MvaI	CCWGG	1 cut(s)	418
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	5 cut(s)	21, 57, 72, 175, 657
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	592
NdeII	GATC	4 cut(s)	33, 115, 337, 434
NlaIII	CATG	1 cut(s)	596
NlaIV	GGNNCC	2 cut(s)	177, 590
NmeAIII	GCCGAG	1 cut(s)	652
NmuCI	GTSAC	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	177, 590
PspPI	GGNCC	2 cut(s)	446, 456
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	3 cut(s)	466, 590, 644
RsaNI	GTAC	3 cut(s)	465, 589, 643
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	192, 297
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	4 cut(s)	33, 115, 337, 434
Sau96I	GGNCC	2 cut(s)	446, 456
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	152, 418
SduI	GDGCHC	2 cut(s)	17, 292
SetI	ASST	6 cut(s)	171, 329, 451, 470, 489, 530
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	2 cut(s)	446, 456
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	5 cut(s)	98, 130, 193, 481, 538
SsiI	CCGC	2 cut(s)	217, 378
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	150, 416
StyI	CCWWGG	2 cut(s)	592, 621
TaaI	ACNGT	2 cut(s)	349, 545
TaiI	ACGT	2 cut(s)	470, 489
TaqI	TCGA	3 cut(s)	11, 27, 474
TasI	AATT	5 cut(s)	98, 130, 193, 481, 538
TatI	WGTACW	1 cut(s)	642
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	192, 297
Tru9I	TTAA	2 cut(s)	192, 297
TscAI	CASTG	3 cut(s)	249, 400, 550
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	3 cut(s)	111, 227, 492
TspRI	CASTG	3 cut(s)	249, 400, 550
VpaK11BI	GGWCC	2 cut(s)	446, 456
VspI	ATTAAT	1 cut(s)	192
XapI	RAATTY	2 cut(s)	98, 130
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.