Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Reverse (-)

7971032 .. 7973706

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027053

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCCATCTTCGAGCCCTCGCAGCGTCGAAGAGATCTTCAGAGACTACAGCGCTCGTCGCTCTGGCATCGTTCGCGCCCTTACCAACGATGTGGATGAATTCTATGCGCTTTGCGATCCAGAGAAGGAGAATTTGTGCTTGTATGGACACCCGGATGAGTCGTGGGAGGTGAATCTGCCGGCGGAGGAAGTGCCGCCGGAGCTTCCAGAGCCTGCTTTGGGGATTAATTTTGCGAGAGATGGGATGAACCGCCAAGATTGGCTGTCTTTGATTGCAGTGCATAGTGATTCTTGGTTGTTGTCTGTGTCTTTCTACTTTGGTGCTCGCCTTAATCGGAATGAGAGGAAGCGTCTCTTTAGCTTGACAAATGATCTGCCAACAGTCTTTGAAGTCGTAACTGGAAGGAAGCCCGCTAGAGACAAACCCAGTGCAGATAGTGGAAGCAAATCCAGGAACAATGCAAAGAGATCAACTGATGGACCTATGAGGACCAATAGTACGTTGCTCGATGAAAATTACGTGGAGGATGAAGATGAGCATAGTGAAACTCTATGTGGAAGCTGTGGGGGAAATTACAGTGCTAATGAGTTTTGGATTGGCTGCGACATCTGCGAGAGATGGTACCATGGGAAGTGTGTGAAGATAACACCATCCAAGGCCGAGTATATCCAGCAGTACAAATGCCCTTCTTGCTCAAAGAAGGGAAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0010033 GO:0014070 GO:0033993 GO:0042221 GO:0050896 GO:1901700 GO:1902347

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_2 Clp_N

Protein Analysis

238

Amino Acids

26.88

Weight (kDa)

5.27

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	8 - 133	4.2e-69	Alfin
PHD	PF00628	185 - 231	6.7e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	621
AccB1I	GGYRCC	1 cut(s)	621
AccII	CGCG	1 cut(s)	75
AciI	CCGC	4 cut(s)	182, 194, 250, 411
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	98, 130
AcuI	CTGAAG	1 cut(s)	22
AfaI	GTAC	3 cut(s)	499, 623, 677
AfeI	AGCGCT	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	3 cut(s)	202, 360, 561
AluI	AGCT	3 cut(s)	202, 360, 561
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	3 cut(s)	36, 356, 411
AlwI	GGATC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	212
Aor51HI	AGCGCT	1 cut(s)	52
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	2 cut(s)	21, 600
ApoI	RAATTY	2 cut(s)	98, 130
AseI	ATTAAT	1 cut(s)	225
Asp718I	GGTACC	1 cut(s)	621
AspLEI	GCGC	3 cut(s)	53, 77, 109
AspS9I	GGNCC	2 cut(s)	479, 489
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	2 cut(s)	479, 489
BanI	GGYRCC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	33, 587
BccI	CCATC	5 cut(s)	13, 233, 470, 612, 658
BciT130I	CCWGG	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	3 cut(s)	36, 356, 411
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	54
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	3 cut(s)	22, 194, 601
BlsI	GCNGC	3 cut(s)	23, 195, 602
Bme1390I	CCNGG	2 cut(s)	152, 451
Bme18I	GGWCC	2 cut(s)	479, 489
BmgT120I	GGNCC	2 cut(s)	479, 489
BmiI	GGNNCC	1 cut(s)	623
BmrFI	CCNGG	2 cut(s)	152, 451
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	625, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	403, 426
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	2 cut(s)	625, 654
BseGI	GGATG	5 cut(s)	100, 160, 249, 532, 650
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	403, 426
BseXI	GCAGC	2 cut(s)	33, 587
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	659
BshNI	GGYRCC	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	3 cut(s)	152, 179, 197
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	3 cut(s)	36, 356, 411
BsmBI	CGTCTC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	17, 325
Bsp143I	GATC	4 cut(s)	33, 115, 370, 467
Bsp19I	CCATGG	1 cut(s)	625
BspACI	CCGC	4 cut(s)	182, 194, 250, 411
BspANI	GGCC	1 cut(s)	659
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	623
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	403, 426
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	625, 654
BssMI	GATC	4 cut(s)	33, 115, 370, 467
BssT1I	CCWWGG	2 cut(s)	625, 654
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	2 cut(s)	382, 578
Bst6I	CTCTTC	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	4 cut(s)	180, 213, 325, 411
BstDSI	CCRYGG	1 cut(s)	625
BstF5I	GGATG	5 cut(s)	100, 160, 249, 532, 650
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	3 cut(s)	53, 77, 109
BstKTI	GATC	4 cut(s)	36, 118, 373, 470
BstMAI	GTCTC	3 cut(s)	36, 356, 411
BstMBI	GATC	4 cut(s)	33, 115, 370, 467
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 57, 72, 199, 208, 609, 690
BstNI	CCWGG	1 cut(s)	451
BstSCI	CCNGG	2 cut(s)	150, 449
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	33, 587
BstX2I	RGATCY	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	659
BtgI	CCRYGG	1 cut(s)	625
BtsCI	GGATG	5 cut(s)	100, 160, 249, 532, 650
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	3 cut(s)	282, 433, 583
Cac8I	GCNNGC	4 cut(s)	180, 213, 325, 411
CaiI	CAGNNNCTG	1 cut(s)	212
CfoI	GCGC	3 cut(s)	53, 77, 109
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	479, 489
CseI	GACGC	2 cut(s)	13, 338
Csp6I	GTAC	3 cut(s)	498, 622, 676
CviAII	CATG	1 cut(s)	626
CviJI	RGCY	9 cut(s)	15, 202, 211, 262, 360, 409, 561, 600, 659
CviKI_1	RGCY	9 cut(s)	15, 202, 211, 262, 360, 409, 561, 600, 659
CviQI	GTAC	3 cut(s)	498, 622, 676
DpnI	GATC	4 cut(s)	35, 117, 372, 469
DpnII	GATC	4 cut(s)	33, 115, 370, 467
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	625, 654
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	479, 489
Eco47III	AGCGCT	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	625, 654
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	2 cut(s)	625, 654
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	1 cut(s)	629
FaiI	YATR	8 cut(s)	105, 144, 282, 485, 540, 553, 627, 666
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	1 cut(s)	625
FauI	CCCGC	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	22, 194, 601
FokI	GGATG	5 cut(s)	107, 167, 256, 539, 637
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	22, 194, 601
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	3 cut(s)	52, 76, 108
GluI	GCNGC	3 cut(s)	22, 194, 601
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	3 cut(s)	152, 179, 197
HgaI	GACGC	2 cut(s)	13, 338
HhaI	GCGC	3 cut(s)	53, 77, 109
Hin1II	CATG	1 cut(s)	629
Hin6I	GCGC	3 cut(s)	51, 75, 107
HinP1I	GCGC	3 cut(s)	51, 75, 107
HinfI	GANTC	3 cut(s)	158, 172, 287
HpaII	CCGG	3 cut(s)	152, 179, 197
HphI	GGTGA	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	41, 336
Hpy188III	TCNNGA	2 cut(s)	119, 206
Hpy99I	CGWCG	2 cut(s)	29, 60
HpyAV	CCTTC	5 cut(s)	118, 396, 694, 696, 699
HpyCH4III	ACNGT	2 cut(s)	382, 578
HpyCH4IV	ACGT	2 cut(s)	500, 519
HpyCH4V	TGCA	4 cut(s)	275, 280, 431, 461
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 57, 72, 199, 208, 609, 690
HpySE526I	ACGT	2 cut(s)	500, 519
Hsp92II	CATG	1 cut(s)	629
HspAI	GCGC	3 cut(s)	51, 75, 107
KpnI	GGTACC	1 cut(s)	625
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	33, 115, 370, 467
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	2 cut(s)	33, 587
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	2 cut(s)	500, 519
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	4 cut(s)	35, 117, 372, 469
MboI	GATC	4 cut(s)	33, 115, 370, 467
MboII	GAAGA	4 cut(s)	28, 41, 542, 652
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	17, 325
MluCI	AATT	5 cut(s)	98, 130, 226, 514, 571
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	6 cut(s)	27, 160, 178, 336, 480, 517
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	2 cut(s)	225, 330
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	3 cut(s)	152, 179, 197
MspR9I	CCNGG	2 cut(s)	152, 451
MvaI	CCWGG	1 cut(s)	451
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	7 cut(s)	21, 57, 72, 199, 208, 609, 690
NaeI	GCCGGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	625
NdeII	GATC	4 cut(s)	33, 115, 370, 467
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	629
NlaIV	GGNNCC	1 cut(s)	623
NmeAIII	GCCGAG	1 cut(s)	685
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	172, 287
PfoI	TCCNGGA	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	23, 195, 602
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	520
PshBI	ATTAAT	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	623
PspPI	GGNCC	2 cut(s)	479, 489
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	3 cut(s)	499, 623, 677
RsaNI	GTAC	3 cut(s)	498, 622, 676
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	225, 330
SatI	GCNGC	3 cut(s)	22, 194, 601
Sau3AI	GATC	4 cut(s)	33, 115, 370, 467
Sau96I	GGNCC	2 cut(s)	479, 489
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	152, 451
SduI	GDGCHC	2 cut(s)	17, 325
SetI	ASST	7 cut(s)	171, 204, 362, 484, 503, 522, 563
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	2 cut(s)	479, 489
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	5 cut(s)	98, 130, 226, 514, 571
SsiI	CCGC	4 cut(s)	182, 194, 250, 411
SspMI	CTAG	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	150, 449
StyI	CCWWGG	2 cut(s)	625, 654
TaaI	ACNGT	2 cut(s)	382, 578
TaiI	ACGT	2 cut(s)	503, 522
TaqI	TCGA	3 cut(s)	11, 27, 507
TasI	AATT	5 cut(s)	98, 130, 226, 514, 571
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	172, 287
Tru1I	TTAA	2 cut(s)	225, 330
Tru9I	TTAA	2 cut(s)	225, 330
TscAI	CASTG	3 cut(s)	282, 433, 583
TseI	GCWGC	2 cut(s)	21, 600
TspDTI	ATGAA	4 cut(s)	111, 260, 525, 543
TspRI	CASTG	3 cut(s)	282, 433, 583
VpaK11BI	GGWCC	2 cut(s)	479, 489
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	2 cut(s)	98, 130
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.