Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006159

Physical Location & Seq

Genomic Coordinates Forward (+)

26550578 .. 26553765

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G250800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCCATCTTCGAGCCCTCGCACCGTCGAAGAGATCTTCAAGGACTACAGCGCTCGTCGCTCTGCTGTCATTCGCGCCCTTACCTACGATGTGGATGAGTTCTATTCGCTTTGCGATCCAGAGAAGGAGAATTTGTGCCTGTACGGACACCCAGATGAGTCGTGGGAGGTGACTCTGCCGGCAGAGGAAGTACCCCCGGAGCTTCCTGAGCCTGCACTGGGCATCAATTTTGCAAGAGATGGGATGAACCGTAAGGATTGGCTGTCATTGATTGCAGTACATAGTGATGCTTGGTTGCTCTCTGTGGCTTTCTACTTTGGTGCTCGCCTGAATCGAAATGAGAGGAAGCGTCTATTTAGCTTGACAAATGATCTGCCTACAATCTTTGAAGTCGTAACTGGAAGGAAGCCCGTAAAAGACAAACCCAGTGCAGATAGTGGAAGCAAATCCAGGAACAGTGCGAAGAGATCAGTTGATGGACAAATAAAGAGCAATAATAAGTTACTCGATGGGAGTTATGTGGAGGATGAAGATGAGCATAGTGAAACCCTATGTGGAAGCTGTGGGGGAAATTACAGTGCTAATGAGTTTTGGATTGGCTGTGACATCTGCGAGAGGTGGTACCATGGGAAGTGTGTGAAGATTACACCAGCCAAGGCAGAATATATTCAGCAGTACAAATGTCCTTCTTGCAGCACAAAGAAGGGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

238

Amino Acids

26.74

Weight (kDa)

5.7

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11200 AT3G11200 AT5G05610 AT5G05610
fragaria_vesca	FvH4_6g11380 FvH4_7g24541
malus_domestica	MD01G1153500.v1.1 MD04G1154200.v1.1 MD07G1222500.v1.1 MD12G1167600.v1.1
prunus_persica	Prupe.2G250800_v2.0.a1 Prupe.6G278200_v2.0.a1
pyrus_communis	pycom01g17110 pycom07g20120 pycom12g15930
rosa_chinensis	RchiOBHm_Chr1g0370381 RchiOBHm_Chr3g0463001
rosa_laevigata	RLG00000024818 RLG00000027053
rosa_multiflora	Rmu_sc0000766.1_g000027 Rmu_sc0012102.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417060
rosa_rugosa	Rorug01G0356000 Rorug03G0060900
rosa_samantha	Rh1AG364300
rosa_wichuraiana	Rw1G032060 Rw3G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	621
AccB1I	GGYRCC	1 cut(s)	621
AccII	CGCG	1 cut(s)	75
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	5 cut(s)	143, 192, 279, 623, 677
AfeI	AGCGCT	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	40, 389
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	3 cut(s)	202, 360, 561
AluI	AGCT	3 cut(s)	202, 360, 561
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	693
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	666
Asp718I	GGTACC	1 cut(s)	621
AspLEI	GCGC	2 cut(s)	53, 77
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	4 cut(s)	13, 233, 470, 503
BciT130I	CCWGG	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	54
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	1 cut(s)	694
BlsI	GCNGC	1 cut(s)	695
Bme1390I	CCNGG	2 cut(s)	197, 451
BmiI	GGNNCC	1 cut(s)	623
BmrFI	CCNGG	2 cut(s)	197, 451
BmrI	ACTGGG	2 cut(s)	227, 420
BmsI	GCATC	2 cut(s)	231, 277
BmuI	ACTGGG	2 cut(s)	227, 420
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	195, 625, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	3 cut(s)	222, 403, 426
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	3 cut(s)	195, 625, 654
BseGI	GGATG	3 cut(s)	100, 249, 532
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	3 cut(s)	222, 403, 426
BseXI	GCAGC	1 cut(s)	705
BsgI	GTGCAG	2 cut(s)	198, 450
Bsh1236I	CGCG	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	179, 197
BslI	CCNNNNNNNGG	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	17, 325
Bsp143I	GATC	4 cut(s)	33, 115, 370, 467
Bsp19I	CCATGG	1 cut(s)	625
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	623
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	3 cut(s)	222, 403, 426
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	3 cut(s)	195, 625, 654
BssMI	GATC	4 cut(s)	33, 115, 370, 467
BssT1I	CCWWGG	2 cut(s)	625, 654
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	4 cut(s)	25, 251, 458, 578
Bst6I	CTCTTC	2 cut(s)	24, 458
BstC8I	GCNNGC	3 cut(s)	180, 213, 325
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	625
BstF5I	GGATG	3 cut(s)	100, 249, 532
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 77
BstKTI	GATC	4 cut(s)	36, 118, 373, 470
BstMBI	GATC	4 cut(s)	33, 115, 370, 467
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 208
BstNI	CCWGG	1 cut(s)	451
BstSCI	CCNGG	2 cut(s)	195, 449
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	625
BtsCI	GGATG	3 cut(s)	100, 249, 532
BtsIMutI	CAGTG	4 cut(s)	215, 433, 463, 583
Cac8I	GCNNGC	3 cut(s)	180, 213, 325
CfoI	GCGC	2 cut(s)	53, 77
Cfr10I	RCCGGY	1 cut(s)	178
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	5 cut(s)	142, 191, 278, 622, 676
CviAII	CATG	1 cut(s)	626
CviQI	GTAC	5 cut(s)	142, 191, 278, 622, 676
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	4 cut(s)	35, 117, 372, 469
DpnII	GATC	4 cut(s)	33, 115, 370, 467
Eam1104I	CTCTTC	2 cut(s)	24, 458
EarI	CTCTTC	2 cut(s)	24, 458
Eco130I	CCWWGG	2 cut(s)	625, 654
Eco24I	GRGCYC	1 cut(s)	17
Eco47III	AGCGCT	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	625, 654
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	2 cut(s)	625, 654
FaeI	CATG	1 cut(s)	629
FaiI	YATR	6 cut(s)	282, 519, 540, 553, 627, 666
FatI	CATG	1 cut(s)	625
Fnu4HI	GCNGC	1 cut(s)	694
FokI	GGATG	3 cut(s)	107, 256, 539
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	694
GlaI	GCGC	2 cut(s)	52, 76
GluI	GCNGC	1 cut(s)	694
HaeII	RGCGCY	1 cut(s)	54
HapII	CCGG	2 cut(s)	179, 197
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	2 cut(s)	53, 77
Hin1II	CATG	1 cut(s)	629
Hin6I	GCGC	2 cut(s)	51, 75
HinP1I	GCGC	2 cut(s)	51, 75
HinfI	GANTC	3 cut(s)	158, 172, 331
HpaII	CCGG	2 cut(s)	179, 197
HphI	GGTGA	1 cut(s)	181
Hpy188III	TCNNGA	2 cut(s)	119, 206
Hpy99I	CGWCG	2 cut(s)	29, 60
HpyAV	CCTTC	4 cut(s)	118, 396, 696, 697
HpyCH4III	ACNGT	4 cut(s)	25, 251, 458, 578
HpyCH4V	TGCA	5 cut(s)	215, 233, 275, 431, 693
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 208
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	629
HspAI	GCGC	2 cut(s)	51, 75
KpnI	GGTACC	1 cut(s)	625
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	33, 115, 370, 467
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	2 cut(s)	231, 277
MaeIII	GTNAC	4 cut(s)	169, 394, 501, 602
MalI	GATC	4 cut(s)	35, 117, 372, 469
MboI	GATC	4 cut(s)	33, 115, 370, 467
MboII	GAAGA	5 cut(s)	28, 41, 475, 542, 652
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	17, 325
MluCI	AATT	3 cut(s)	130, 226, 571
MlyI	GAGTC	2 cut(s)	166, 167
MnlI	CCTC	6 cut(s)	27, 160, 178, 336, 517, 609
MroNI	GCCGGC	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	666
MslI	CAYNNNNRTG	2 cut(s)	153, 285
MspI	CCGG	2 cut(s)	179, 197
MspR9I	CCNGG	2 cut(s)	197, 451
MvaI	CCWGG	1 cut(s)	451
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	57, 208
NaeI	GCCGGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	625
NdeII	GATC	4 cut(s)	33, 115, 370, 467
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	629
NlaIV	GGNNCC	1 cut(s)	623
NmuCI	GTSAC	2 cut(s)	169, 602
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PdiI	GCCGGC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	695
PleI	GAGTC	2 cut(s)	166, 166
PpsI	GAGTC	2 cut(s)	166, 166
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	5 cut(s)	143, 192, 279, 623, 677
RsaNI	GTAC	5 cut(s)	142, 191, 278, 622, 676
RseI	CAYNNNNRTG	2 cut(s)	153, 285
SatI	GCNGC	1 cut(s)	694
Sau3AI	GATC	4 cut(s)	33, 115, 370, 467
SchI	GAGTC	2 cut(s)	166, 167
ScrFI	CCNGG	2 cut(s)	197, 451
SduI	GDGCHC	2 cut(s)	17, 325
SetI	ASST	6 cut(s)	86, 171, 204, 362, 563, 620
SfaNI	GCATC	2 cut(s)	231, 277
SfcI	CTRYAG	1 cut(s)	46
SmiMI	CAYNNNNRTG	2 cut(s)	153, 285
Sse9I	AATT	3 cut(s)	130, 226, 571
StyD4I	CCNGG	2 cut(s)	195, 449
StyI	CCWWGG	2 cut(s)	625, 654
TaaI	ACNGT	4 cut(s)	25, 251, 458, 578
TaqI	TCGA	4 cut(s)	11, 27, 334, 507
TasI	AATT	3 cut(s)	130, 226, 571
TatI	WGTACW	2 cut(s)	277, 675
TfiI	GAWTC	1 cut(s)	331
TscAI	CASTG	4 cut(s)	222, 433, 463, 583
TseFI	GTSAC	2 cut(s)	169, 602
TseI	GCWGC	1 cut(s)	693
Tsp45I	GTSAC	2 cut(s)	169, 602
TspDTI	ATGAA	2 cut(s)	260, 543
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	4 cut(s)	222, 433, 463, 583
XapI	RAATTY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.